Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
09:16:23 (544442): wrapper (7.7.26015): starting
09:16:23 (544442): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 09:16:23] Arguments: --nthreads 4
[2026-01-11 09:16:23] Threads: 4
[2026-01-11 09:16:23] Checking for CVMFS
[2026-01-11 09:16:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 09:16:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 09:16:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 09:16:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 09:16:23] 2.13.3.0 1712136 5461 59104 155010 0 83 3101526 4194305 1543 130560 41 8174838 99.929 950394 265 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-11 09:16:23] CVMFS is ok
[2026-01-11 09:16:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 09:16:23] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-11 09:16:23] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-11 09:16:23] Further information can be found at the LHC@home message board.
[2026-01-11 09:16:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 09:16:23] Checking for apptainer binary...
[2026-01-11 09:16:23] apptainer is not installed, using version from CVMFS
[2026-01-11 09:16:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 09:16:23] Ryze
[2026-01-11 09:16:23] apptainer works
[2026-01-11 09:16:23] Set ATHENA_PROC_NUMBER=4
[2026-01-11 09:16:23] Set ATHENA_CORE_NUMBER=4
[2026-01-11 09:16:23] Starting ATLAS job with PandaID=6965384399
[2026-01-11 09:16:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 09:49:39]  *** The last 200 lines of the pilot log: ***
[2026-01-11 09:49:39]  lfn=log.47962010._002535.job.log.tgz.1
[2026-01-11 09:49:39]  mtime=0
[2026-01-11 09:49:39]  protocol_id=None
[2026-01-11 09:49:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-11 09:49:39]  replicas=None
[2026-01-11 09:49:39]  scope=mc16_13TeV
[2026-01-11 09:49:39]  status=None
[2026-01-11 09:49:39]  status_code=0
[2026-01-11 09:49:39]  storage_token=
[2026-01-11 09:49:39]  surl=/var/lib/boinc-client/slots/5/PanDA_Pilot-6965384399/log.47962010._002535.job.log.tgz.1
[2026-01-11 09:49:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/e9/da/log.47962010._002535.job.log.tgz.1
[2026-01-11 09:49:39]  workdir=None
[2026-01-11 09:49:39] ]
[2026-01-11 09:49:39] 2026-01-11 08:48:59,497 | INFO     | transferring file log.47962010._002535.job.log.tgz.1 from /var/lib/boinc-client/slots/5/PanDA_Pilot-6965384399/log.47962010._002535.job.log.tgz.1 to /var/lib/boinc
[2026-01-11 09:49:39] 2026-01-11 08:48:59,497 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/5/PanDA_Pilot-6965384399/log.47962010._002535.job.log.tgz.1 /var/lib/boinc-client/slots/5/log.479620
[2026-01-11 09:49:39] 2026-01-11 08:48:59,515 | INFO     | adding to output.list: log.47962010._002535.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/e9/da/log.47962010._002535.job.log.tgz.
[2026-01-11 09:49:39] 2026-01-11 08:48:59,516 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 09:49:39] 2026-01-11 08:48:59,516 | INFO     | summary of transferred files:
[2026-01-11 09:49:39] 2026-01-11 08:48:59,516 | INFO     |  -- lfn=log.47962010._002535.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 09:49:39] 2026-01-11 08:48:59,516 | INFO     | stage-out finished correctly
[2026-01-11 09:49:39] 2026-01-11 08:49:00,040 | INFO     | time since job start (1950s) is within the limit (349056.0s)
[2026-01-11 09:49:39] 2026-01-11 08:49:02,045 | INFO     | time since job start (1952s) is within the limit (349056.0s)
[2026-01-11 09:49:39] 2026-01-11 08:49:02,475 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 09:49:39] 2026-01-11 08:49:03,189 | INFO     | PID=548251 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 09:49:39] 2026-01-11 08:49:03,189 | INFO     | .. there are 3 such processes running
[2026-01-11 09:49:39] 2026-01-11 08:49:03,661 | INFO     | job 6965384399 has state=finished
[2026-01-11 09:49:39] 2026-01-11 08:49:03,662 | INFO     | preparing for final server update for job 6965384399 in state='finished'
[2026-01-11 09:49:39] 2026-01-11 08:49:03,662 | INFO     | this job has now completed (state=finished)
[2026-01-11 09:49:39] 2026-01-11 08:49:03,662 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 09:49:39] 2026-01-11 08:49:03,662 | INFO     | log transfer has been attempted: DONE
[2026-01-11 09:49:39] 2026-01-11 08:49:03,662 | INFO     | job 6965384399 has finished - writing final server update
[2026-01-11 09:49:39] 2026-01-11 08:49:03,662 | INFO     | total number of processed events: 50 (read)
[2026-01-11 09:49:39] 2026-01-11 08:49:03,663 | INFO     | executing command: lscpu
[2026-01-11 09:49:39] 2026-01-11 08:49:03,691 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 09:49:39] 2026-01-11 08:49:04,190 | INFO     | time since job start (1954s) is within the limit (349056.0s)
[2026-01-11 09:49:39] 2026-01-11 08:49:04,930 | WARNING  | process 554841 can no longer be monitored (due to stat problems) - aborting
[2026-01-11 09:49:39] 2026-01-11 08:49:04,930 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6965384399/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 09:49:39] 2026-01-11 08:49:05,043 | INFO     | number of running child processes to parent process 554841: 1
[2026-01-11 09:49:39] 2026-01-11 08:49:05,043 | INFO     | maximum number of monitored processes: 9
[2026-01-11 09:49:39] 2026-01-11 08:49:06,195 | INFO     | time since job start (1956s) is within the limit (349056.0s)
[2026-01-11 09:49:39] 2026-01-11 08:49:06,533 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 09:49:39] 2026-01-11 08:49:06,537 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3771.6810833333334
[2026-01-11 09:49:39] 2026-01-11 08:49:06,540 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6965384399/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 09:49:39] 2026-01-11 08:49:06,540 | INFO     | extracted standard info from prmon json
[2026-01-11 09:49:39] 2026-01-11 08:49:06,540 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 09:49:39] 2026-01-11 08:49:06,540 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 09:49:39] 2026-01-11 08:49:06,541 | INFO     | fitting pss+swap vs Time
[2026-01-11 09:49:39] 2026-01-11 08:49:06,541 | INFO     | sum of square deviations: 4837300.0
[2026-01-11 09:49:39] 2026-01-11 08:49:06,541 | INFO     | sum of deviations: -348114617.0
[2026-01-11 09:49:39] 2026-01-11 08:49:06,541 | INFO     | mean x: 1768120449.0
[2026-01-11 09:49:39] 2026-01-11 08:49:06,542 | INFO     | mean y: 2220273.6
[2026-01-11 09:49:39] 2026-01-11 08:49:06,542 | INFO     | intersect: 127244395229.36107
[2026-01-11 09:49:39] 2026-01-11 08:49:06,542 | INFO     | chi2: 0.018966404014851633
[2026-01-11 09:49:39] 2026-01-11 08:49:06,542 | INFO     | current memory leak: -71.96 B/s (using 25 data points, chi2=0.02)
[2026-01-11 09:49:39] 2026-01-11 08:49:06,542 | INFO     | could have reported an average CPU frequency of 3705 MHz (5 samples)
[2026-01-11 09:49:39] 2026-01-11 08:49:06,542 | INFO     | ..............................
[2026-01-11 09:49:39] 2026-01-11 08:49:06,542 | INFO     | . Timing measurements:
[2026-01-11 09:49:39] 2026-01-11 08:49:06,542 | INFO     | . get job = 0 s
[2026-01-11 09:49:39] 2026-01-11 08:49:06,542 | INFO     | . initial setup = 1 s
[2026-01-11 09:49:39] 2026-01-11 08:49:06,542 | INFO     | . payload setup = 4 s
[2026-01-11 09:49:39] 2026-01-11 08:49:06,542 | INFO     | . stage-in = 0 s
[2026-01-11 09:49:39] 2026-01-11 08:49:06,542 | INFO     | . payload execution = 1927 s
[2026-01-11 09:49:39] 2026-01-11 08:49:06,543 | INFO     | . stage-out = 0 s
[2026-01-11 09:49:39] 2026-01-11 08:49:06,543 | INFO     | . log creation = 0 s
[2026-01-11 09:49:39] 2026-01-11 08:49:06,543 | INFO     | ..............................
[2026-01-11 09:49:39] 2026-01-11 08:49:06,975 | INFO     | 
[2026-01-11 09:49:39] 2026-01-11 08:49:06,975 | INFO     | job summary report
[2026-01-11 09:49:39] 2026-01-11 08:49:06,975 | INFO     | --------------------------------------------------
[2026-01-11 09:49:39] 2026-01-11 08:49:06,975 | INFO     | PanDA job id: 6965384399
[2026-01-11 09:49:39] 2026-01-11 08:49:06,975 | INFO     | task id: 47962010
[2026-01-11 09:49:39] 2026-01-11 08:49:06,975 | INFO     | errors: (none)
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | pilot state: finished 
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | transexitcode: 0
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | exeerrorcode: 0
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | exeerrordiag: 
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | exitcode: 0
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | exitmsg: OK
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | cpuconsumptiontime: 6748 s
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | nevents: 50
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | neventsw: 0
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | pid: 554841
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | pgrp: 554841
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | corecount: 4
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | event service: False
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | sizes: {0: 2283743, 1: 2284606, 4: 2284868, 11: 2284896, 1935: 2319613, 1938: 2319613, 1942: 2320019}
[2026-01-11 09:49:39] 2026-01-11 08:49:06,976 | INFO     | --------------------------------------------------
[2026-01-11 09:49:39] 2026-01-11 08:49:06,977 | INFO     | 
[2026-01-11 09:49:39] 2026-01-11 08:49:06,977 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2026-01-11 09:49:39] 2026-01-11 08:49:06,995 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,995 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,995 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,995 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,995 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,995 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,995 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,995 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,995 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,995 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,995 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,996 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,996 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,996 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,996 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,996 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,996 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,996 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 09:49:39] 2026-01-11 08:49:06,996 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,996 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 09:49:39] 2026-01-11 08:49:06,996 | INFO     | job 6965384399 has completed (purged errors)
[2026-01-11 09:49:39] 2026-01-11 08:49:06,996 | INFO     | overall cleanup function is called
[2026-01-11 09:49:39] 2026-01-11 08:49:08,006 | INFO     | --- collectZombieJob: --- 10, [554841]
[2026-01-11 09:49:39] 2026-01-11 08:49:08,006 | INFO     | zombie collector waiting for pid 554841
[2026-01-11 09:49:39] 2026-01-11 08:49:08,006 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 09:49:39] 2026-01-11 08:49:08,007 | INFO     | collected zombie processes
[2026-01-11 09:49:39] 2026-01-11 08:49:08,007 | INFO     | will attempt to kill all subprocesses of pid=554841
[2026-01-11 09:49:39] 2026-01-11 08:49:08,106 | INFO     | process IDs to be killed: [554841] (in reverse order)
[2026-01-11 09:49:39] 2026-01-11 08:49:08,152 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 09:49:39] 2026-01-11 08:49:08,153 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 09:49:39] 2026-01-11 08:49:08,156 | INFO     | did not find any defunct processes belonging to 554841
[2026-01-11 09:49:39] 2026-01-11 08:49:08,159 | INFO     | did not find any defunct processes belonging to 554841
[2026-01-11 09:49:39] 2026-01-11 08:49:08,160 | INFO     | ready for new job
[2026-01-11 09:49:39] 2026-01-11 08:49:08,160 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 09:49:39] 2026-01-11 08:49:08,161 | INFO     | ***************************************
[2026-01-11 09:49:39] 2026-01-11 08:49:08,161 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 09:49:39] 2026-01-11 08:49:08,161 | INFO     | ***************************************
[2026-01-11 09:49:39] 2026-01-11 08:49:08,161 | INFO     | 
[2026-01-11 09:49:39] 2026-01-11 08:49:08,162 | INFO     | architecture information:
[2026-01-11 09:49:39] 2026-01-11 08:49:08,163 | INFO     | executing command: cat /etc/os-release
[2026-01-11 09:49:39] 2026-01-11 08:49:08,178 | INFO     | cat /etc/os-release:
[2026-01-11 09:49:39] NAME="CentOS Linux"
[2026-01-11 09:49:39] VERSION="7 (Core)"
[2026-01-11 09:49:39] ID="centos"
[2026-01-11 09:49:39] ID_LIKE="rhel fedora"
[2026-01-11 09:49:39] VERSION_ID="7"
[2026-01-11 09:49:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 09:49:39] ANSI_COLOR="0;31"
[2026-01-11 09:49:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 09:49:39] HOME_URL="https://www.centos.org/"
[2026-01-11 09:49:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 09:49:39] 
[2026-01-11 09:49:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 09:49:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 09:49:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 09:49:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 09:49:39] 
[2026-01-11 09:49:39] 2026-01-11 08:49:08,178 | INFO     | ***************************************
[2026-01-11 09:49:39] 2026-01-11 08:49:08,681 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2026-01-11 09:49:39] 2026-01-11 08:49:08,699 | INFO     | sufficient remaining disk space (3072392691712 B)
[2026-01-11 09:49:39] 2026-01-11 08:49:08,699 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 09:49:39] 2026-01-11 08:49:08,699 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 09:49:39] 2026-01-11 08:49:08,699 | INFO     | update_server=False
[2026-01-11 09:49:39] 2026-01-11 08:49:08,699 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 09:49:39] 2026-01-11 08:49:08,699 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 09:49:39] 2026-01-11 08:49:08,699 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 09:49:39] 2026-01-11 08:49:08,700 | INFO     | aborting loop
[2026-01-11 09:49:39] 2026-01-11 08:49:08,785 | INFO     | all payload control threads have been joined
[2026-01-11 09:49:39] 2026-01-11 08:49:08,990 | INFO     | all data control threads have been joined
[2026-01-11 09:49:39] 2026-01-11 08:49:09,159 | INFO     | all job control threads have been joined
[2026-01-11 09:49:39] 2026-01-11 08:49:09,704 | INFO     | [job] retrieve thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:09,705 | INFO     | [job] job monitor thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:09,762 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:09,790 | INFO     | [payload] control thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:09,995 | INFO     | [data] control thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:10,093 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 09:49:39] 2026-01-11 08:49:10,134 | INFO     | [payload] failed_post thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:10,164 | INFO     | [job] control thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:10,505 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:10,532 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:11,065 | INFO     | [job] validate thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:11,114 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:11,132 | INFO     | [data] copytool_in thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:11,269 | INFO     | [payload] validate_post thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:11,619 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 09:49:39] 2026-01-11 08:49:12,098 | INFO     | [data] copytool_out thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:12,625 | INFO     | [job] queue monitor thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:12,705 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 09:49:39] 2026-01-11 08:49:33,235 | INFO     | [monitor] cgroup control has ended
[2026-01-11 09:49:39] 2026-01-11 08:49:34,006 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130181728311104)>', '<ExcThread(monitor, started 130180509062912)>']
[2026-01-11 09:49:39] 2026-01-11 08:49:39,030 | INFO     | all workflow threads have been joined
[2026-01-11 09:49:39] 2026-01-11 08:49:39,030 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 09:49:39] 2026-01-11 08:49:39,031 | INFO     | traces error code: 0
[2026-01-11 09:49:39] 2026-01-11 08:49:39,031 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 09:49:39] 2026-01-11 08:49:39,376 | INFO     | PID=548251 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 09:49:39] 2026-01-11 08:49:39,376 | INFO     | .. there are 3 such processes running
[2026-01-11 09:49:39] 2026-01-11 08:49:39,376 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 09:49:39] 2026-01-11 08:49:39,376 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 09:49:39] 2026-01-11 08:49:39,376 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 09:49:39] 2026-01-11 08:49:39,376 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 09:49:39] 2026-01-11 08:49:39,376 | INFO     | [monitor] control thread has ended
[2026-01-11 09:49:39] 2026-01-11 08:49:39,463 [wrapper] ==== pilot stdout END ====
[2026-01-11 09:49:39] 2026-01-11 08:49:39,465 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 09:49:39] 2026-01-11 08:49:39,467 [wrapper] pilotpid: 548251
[2026-01-11 09:49:39] 2026-01-11 08:49:39,469 [wrapper] Pilot exit status: 0
[2026-01-11 09:49:39] 2026-01-11 08:49:39,478 [wrapper] pandaids: 6965384399
[2026-01-11 09:49:39] 2026-01-11 08:49:39,509 [wrapper] cleanup supervisor_pilot  603332 548252
[2026-01-11 09:49:39] 2026-01-11 08:49:39,512 [wrapper] Test setup, not cleaning
[2026-01-11 09:49:39] 2026-01-11 08:49:39,514 [wrapper] apfmon messages muted
[2026-01-11 09:49:39] 2026-01-11 08:49:39,516 [wrapper] ==== wrapper stdout END ====
[2026-01-11 09:49:39] 2026-01-11 08:49:39,518 [wrapper] ==== wrapper stderr END ====
[2026-01-11 09:49:39]  *** Error codes and diagnostics ***
[2026-01-11 09:49:39]     "exeErrorCode": 0,
[2026-01-11 09:49:39]     "exeErrorDiag": "",
[2026-01-11 09:49:39]     "pilotErrorCode": 0,
[2026-01-11 09:49:39]     "pilotErrorDiag": "",
[2026-01-11 09:49:39]  *** Listing of results directory ***
[2026-01-11 09:49:39] insgesamt 431260
[2026-01-11 09:49:39] -rw-r--r-- 1 boinc boinc      5112 Jan 10 14:13 queuedata.json
[2026-01-11 09:49:39] -rw-r--r-- 1 boinc boinc    579449 Jan 10 14:14 pilot3.tar.gz
[2026-01-11 09:49:39] -rwx------ 1 boinc boinc     36322 Jan 10 14:14 runpilot2-wrapper.sh
[2026-01-11 09:49:39] -rw-r--r-- 1 boinc boinc       100 Jan 11 09:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 09:49:39] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 09:16 run_atlas
[2026-01-11 09:49:39] -rw-r--r-- 1 boinc boinc       105 Jan 11 09:16 job.xml
[2026-01-11 09:49:39] -rw-r--r-- 2 boinc boinc 392111621 Jan 11 09:16 EVNT.47962006._000111.pool.root.1
[2026-01-11 09:49:39] -rw-r--r-- 2 boinc boinc    592614 Jan 11 09:16 input.tar.gz
[2026-01-11 09:49:39] -rw-r--r-- 2 boinc boinc     15847 Jan 11 09:16 start_atlas.sh
[2026-01-11 09:49:39] drwxrwx--x 2 boinc boinc      4096 Jan 11 09:16 shared
[2026-01-11 09:49:39] -rw-r--r-- 1 boinc boinc         0 Jan 11 09:16 boinc_setup_complete
[2026-01-11 09:49:39] -rw-r--r-- 1 boinc boinc      8869 Jan 11 09:16 init_data.xml
[2026-01-11 09:49:39] -rw-r--r-- 1 boinc boinc         0 Jan 11 09:16 boinc_lockfile
[2026-01-11 09:49:39] -rw-r--r-- 1 boinc boinc      2891 Jan 11 09:16 pandaJob.out
[2026-01-11 09:49:39] -rw------- 1 boinc boinc    989548 Jan 11 09:16 agis_schedconf.cvmfs.json
[2026-01-11 09:49:39] -rw------- 1 boinc boinc   1516240 Jan 11 09:16 agis_ddmendpoints.agis.ALL.json
[2026-01-11 09:49:39] drwx------ 5 boinc boinc      4096 Jan 11 09:16 pilot3
[2026-01-11 09:49:39] -rw-r--r-- 1 boinc boinc       528 Jan 11 09:45 boinc_task_state.xml
[2026-01-11 09:49:39] -rw------- 1 boinc boinc        95 Jan 11 09:48 pilot_heartbeat.json
[2026-01-11 09:49:39] -rw------- 1 boinc boinc  43469077 Jan 11 09:48 HITS.47962010._002535.pool.root.1
[2026-01-11 09:49:39] -rw------- 1 boinc boinc      1014 Jan 11 09:48 memory_monitor_summary.json
[2026-01-11 09:49:39] -rw------- 1 boinc boinc    720159 Jan 11 09:48 log.47962010._002535.job.log.tgz.1
[2026-01-11 09:49:39] -rw------- 1 boinc boinc      8486 Jan 11 09:49 heartbeat.json
[2026-01-11 09:49:39] -rw-r--r-- 1 boinc boinc      8192 Jan 11 09:49 boinc_mmap_file
[2026-01-11 09:49:39] -rw-r--r-- 1 boinc boinc        26 Jan 11 09:49 wrapper_checkpoint.txt
[2026-01-11 09:49:39] -rw------- 1 boinc boinc       821 Jan 11 09:49 pilotlog.txt
[2026-01-11 09:49:39] -rw------- 1 boinc boinc    332249 Jan 11 09:49 log.47962010._002535.job.log.1
[2026-01-11 09:49:39] -rw------- 1 boinc boinc       353 Jan 11 09:49 output.list
[2026-01-11 09:49:39] -rw-r--r-- 1 boinc boinc       620 Jan 11 09:49 runtime_log
[2026-01-11 09:49:39] -rw------- 1 boinc boinc   1075200 Jan 11 09:49 result.tar.gz
[2026-01-11 09:49:39] -rw-r--r-- 1 boinc boinc      8859 Jan 11 09:49 runtime_log.err
[2026-01-11 09:49:39] -rw------- 1 boinc boinc       634 Jan 11 09:49 PRlLDmSyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkZhKDmdKtn6m.diag
[2026-01-11 09:49:39] -rw-r--r-- 1 boinc boinc     21889 Jan 11 09:49 stderr.txt
[2026-01-11 09:49:39] HITS file was successfully produced:
[2026-01-11 09:49:39] -rw------- 1 boinc boinc 43469077 Jan 11 09:48 shared/HITS.pool.root.1
[2026-01-11 09:49:39]  *** Contents of shared directory: ***
[2026-01-11 09:49:39] insgesamt 427032
[2026-01-11 09:49:39] -rw-r--r-- 2 boinc boinc 392111621 Jan 11 09:16 ATLAS.root_0
[2026-01-11 09:49:39] -rw-r--r-- 2 boinc boinc    592614 Jan 11 09:16 input.tar.gz
[2026-01-11 09:49:39] -rw-r--r-- 2 boinc boinc     15847 Jan 11 09:16 start_atlas.sh
[2026-01-11 09:49:39] -rw------- 1 boinc boinc  43469077 Jan 11 09:48 HITS.pool.root.1
[2026-01-11 09:49:39] -rw------- 1 boinc boinc   1075200 Jan 11 09:49 result.tar.gz
09:49:41 (544442): run_atlas exited; CPU time 6726.505603
09:49:41 (544442): called boinc_finish(0)

</stderr_txt>
]]>

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