Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:20:23 (2545594): wrapper (7.7.26015): starting
08:20:23 (2545594): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 08:20:23] Arguments: --nthreads 12
[2026-01-10 08:20:23] Threads: 12
[2026-01-10 08:20:23] Checking for CVMFS
[2026-01-10 08:20:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:20:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:20:25] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:20:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:20:26] 2.13.3.0 7410 94857 612184 154981 1 13 18101556 25181185 22023 16776704 0 477395149 99.563 524924914 28225 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 08:20:26] CVMFS is ok
[2026-01-10 08:20:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:20:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:20:26] Further information can be found at the LHC@home message board.
[2026-01-10 08:20:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:20:26] Checking for apptainer binary...
[2026-01-10 08:20:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:20:26] Running /usr/bin/apptainer --version
[2026-01-10 08:20:26] apptainer version 1.4.5-2.el9
[2026-01-10 08:20:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:20:27] c-16-37.aglt2.org
[2026-01-10 08:20:27] apptainer works
[2026-01-10 08:20:27] Set ATHENA_PROC_NUMBER=12
[2026-01-10 08:20:27] Set ATHENA_CORE_NUMBER=12
[2026-01-10 08:20:27] Starting ATLAS job with PandaID=6965384385
[2026-01-10 08:20:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 12:18:21]  *** The last 200 lines of the pilot log: ***
[2026-01-10 12:18:21] 2026-01-10 17:17:30,845 | INFO     | time since job start (14159s) is within the limit (349056.0s)
[2026-01-10 12:18:21] 2026-01-10 17:17:32,946 | INFO     | monitor loop #726: job 0:6965384385 is in state 'finished'
[2026-01-10 12:18:21] 2026-01-10 17:17:32,946 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:18:21] 2026-01-10 17:17:35,515 | INFO     | monitor loop #727: job 0:6965384385 is in state 'finished'
[2026-01-10 12:18:21] 2026-01-10 17:17:35,535 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:18:21] 2026-01-10 17:17:36,285 | INFO     | PID=2552962 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 12:18:21] 2026-01-10 17:17:36,285 | INFO     | .. there are 30 such processes running
[2026-01-10 12:18:21] 2026-01-10 17:17:37,286 | INFO     | time since job start (14166s) is within the limit (349056.0s)
[2026-01-10 12:18:21] 2026-01-10 17:17:38,040 | INFO     | monitor loop #728: job 0:6965384385 is in state 'finished'
[2026-01-10 12:18:21] 2026-01-10 17:17:38,040 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:18:21] 2026-01-10 17:17:39,292 | INFO     | time since job start (14168s) is within the limit (349056.0s)
[2026-01-10 12:18:21] 2026-01-10 17:17:40,548 | INFO     | monitor loop #729: job 0:6965384385 is in state 'finished'
[2026-01-10 12:18:21] 2026-01-10 17:17:40,601 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:18:21] 2026-01-10 17:17:41,299 | INFO     | time since job start (14170s) is within the limit (349056.0s)
[2026-01-10 12:18:21] 2026-01-10 17:17:43,106 | INFO     | monitor loop #730: job 0:6965384385 is in state 'finished'
[2026-01-10 12:18:21] 2026-01-10 17:17:43,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:18:21] 2026-01-10 17:17:43,314 | INFO     | time since job start (14172s) is within the limit (349056.0s)
[2026-01-10 12:18:21] 2026-01-10 17:17:45,325 | INFO     | time since job start (14174s) is within the limit (349056.0s)
[2026-01-10 12:18:21] 2026-01-10 17:17:45,424 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 12:18:21] 2026-01-10 17:17:45,441 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2734.5904791666667
[2026-01-10 12:18:21] 2026-01-10 17:17:45,451 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965384385/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 12:18:21] 2026-01-10 17:17:45,452 | INFO     | extracted standard info from prmon json
[2026-01-10 12:18:21] 2026-01-10 17:17:45,452 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 12:18:21] 2026-01-10 17:17:45,452 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 12:18:21] 2026-01-10 17:17:45,458 | INFO     | fitting pss+swap vs Time
[2026-01-10 12:18:21] 2026-01-10 17:17:45,458 | INFO     | sum of square deviations: 3773483620.191303
[2026-01-10 12:18:21] 2026-01-10 17:17:45,460 | INFO     | sum of deviations: -271440313780.34784
[2026-01-10 12:18:21] 2026-01-10 17:17:45,460 | INFO     | mean x: 1768058406.3217392
[2026-01-10 12:18:21] 2026-01-10 17:17:45,460 | INFO     | mean y: 2731900.8695652173
[2026-01-10 12:18:21] 2026-01-10 17:17:45,461 | INFO     | intersect: 127185562648.0252
[2026-01-10 12:18:21] 2026-01-10 17:17:45,461 | INFO     | chi2: 16.092158678536663
[2026-01-10 12:18:21] 2026-01-10 17:17:45,462 | INFO     | sum of square deviations: 3533012243.03999
[2026-01-10 12:18:21] 2026-01-10 17:17:45,463 | INFO     | sum of deviations: -192435580313.40002
[2026-01-10 12:18:21] 2026-01-10 17:17:45,464 | INFO     | mean x: 1768058253.9066668
[2026-01-10 12:18:21] 2026-01-10 17:17:45,464 | INFO     | mean y: 2782047.933333333
[2026-01-10 12:18:21] 2026-01-10 17:17:45,464 | INFO     | intersect: 96305113518.3921
[2026-01-10 12:18:21] 2026-01-10 17:17:45,464 | INFO     | chi2: 12.319607227235117
[2026-01-10 12:18:21] 2026-01-10 17:17:45,465 | INFO     | current chi2=12.319607227235117 (change=23.44341443968785 %)
[2026-01-10 12:18:21] 2026-01-10 17:17:45,465 | INFO     | right removable region: 224
[2026-01-10 12:18:21] 2026-01-10 17:17:45,465 | INFO     | sum of square deviations: 3532476053.03999
[2026-01-10 12:18:21] 2026-01-10 17:17:45,467 | INFO     | sum of deviations: -344354214181.56006
[2026-01-10 12:18:21] 2026-01-10 17:17:45,467 | INFO     | mean x: 1768058558.9066668
[2026-01-10 12:18:21] 2026-01-10 17:17:45,467 | INFO     | mean y: 2777950.64
[2026-01-10 12:18:21] 2026-01-10 17:17:45,467 | INFO     | intersect: 172357354892.59283
[2026-01-10 12:18:21] 2026-01-10 17:17:45,468 | INFO     | chi2: 12.596680392044266
[2026-01-10 12:18:21] 2026-01-10 17:17:45,468 | INFO     | current chi2=12.596680392044266 (change=21.721624527320763 %)
[2026-01-10 12:18:21] 2026-01-10 17:17:45,468 | INFO     | left removable region: 10
[2026-01-10 12:18:21] 2026-01-10 17:17:45,469 | INFO     | sum of square deviations: 3039826063.200955
[2026-01-10 12:18:21] 2026-01-10 17:17:45,470 | INFO     | sum of deviations: -260194368567.3598
[2026-01-10 12:18:21] 2026-01-10 17:17:45,470 | INFO     | mean x: 1768058528.462617
[2026-01-10 12:18:21] 2026-01-10 17:17:45,471 | INFO     | mean y: 2848836.8925233646
[2026-01-10 12:18:21] 2026-01-10 17:17:45,471 | INFO     | intersect: 151340084204.57745
[2026-01-10 12:18:21] 2026-01-10 17:17:45,471 | INFO     | chi2: 7.634699230806312
[2026-01-10 12:18:21] 2026-01-10 17:17:45,471 | INFO     | current memory leak: -85.60 B/s (using 214 data points, chi2=7.63)
[2026-01-10 12:18:21] 2026-01-10 17:17:45,472 | INFO     | could have reported an average CPU frequency of 2770 MHz (11 samples)
[2026-01-10 12:18:21] 2026-01-10 17:17:45,472 | INFO     | ..............................
[2026-01-10 12:18:21] 2026-01-10 17:17:45,473 | INFO     | . Timing measurements:
[2026-01-10 12:18:21] 2026-01-10 17:17:45,473 | INFO     | . get job = 0 s
[2026-01-10 12:18:21] 2026-01-10 17:17:45,473 | INFO     | . initial setup = 5 s
[2026-01-10 12:18:21] 2026-01-10 17:17:45,473 | INFO     | . payload setup = 37 s
[2026-01-10 12:18:21] 2026-01-10 17:17:45,473 | INFO     | . stage-in = 0 s
[2026-01-10 12:18:21] 2026-01-10 17:17:45,473 | INFO     | . payload execution = 14026 s
[2026-01-10 12:18:21] 2026-01-10 17:17:45,473 | INFO     | . stage-out = 6 s
[2026-01-10 12:18:21] 2026-01-10 17:17:45,474 | INFO     | . log creation = 1 s
[2026-01-10 12:18:21] 2026-01-10 17:17:45,474 | INFO     | ..............................
[2026-01-10 12:18:21] 2026-01-10 17:17:45,734 | INFO     | 
[2026-01-10 12:18:21] 2026-01-10 17:17:45,734 | INFO     | job summary report
[2026-01-10 12:18:21] 2026-01-10 17:17:45,742 | INFO     | --------------------------------------------------
[2026-01-10 12:18:21] 2026-01-10 17:17:45,742 | INFO     | PanDA job id: 6965384385
[2026-01-10 12:18:21] 2026-01-10 17:17:45,742 | INFO     | task id: 47962010
[2026-01-10 12:18:21] 2026-01-10 17:17:45,742 | INFO     | errors: (none)
[2026-01-10 12:18:21] 2026-01-10 17:17:45,742 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 12:18:21] 2026-01-10 17:17:45,742 | INFO     | pilot state: finished 
[2026-01-10 12:18:21] 2026-01-10 17:17:45,742 | INFO     | transexitcode: 0
[2026-01-10 12:18:21] 2026-01-10 17:17:45,743 | INFO     | exeerrorcode: 0
[2026-01-10 12:18:21] 2026-01-10 17:17:45,743 | INFO     | exeerrordiag: 
[2026-01-10 12:18:21] 2026-01-10 17:17:45,743 | INFO     | exitcode: 0
[2026-01-10 12:18:21] 2026-01-10 17:17:45,743 | INFO     | exitmsg: OK
[2026-01-10 12:18:21] 2026-01-10 17:17:45,743 | INFO     | cpuconsumptiontime: 20980 s
[2026-01-10 12:18:21] 2026-01-10 17:17:45,743 | INFO     | nevents: 50
[2026-01-10 12:18:21] 2026-01-10 17:17:45,743 | INFO     | neventsw: 0
[2026-01-10 12:18:21] 2026-01-10 17:17:45,744 | INFO     | pid: 2574941
[2026-01-10 12:18:21] 2026-01-10 17:17:45,744 | INFO     | pgrp: 2574941
[2026-01-10 12:18:21] 2026-01-10 17:17:45,744 | INFO     | corecount: 12
[2026-01-10 12:18:21] 2026-01-10 17:17:45,744 | INFO     | event service: False
[2026-01-10 12:18:21] 2026-01-10 17:17:45,744 | INFO     | sizes: {0: 2284398, 1: 2284597, 2: 2284597, 13: 2284625, 24: 2284681, 27: 2284971, 34: 2285127, 14069: 2316073, 14070: 2316072, 14076: 2325122, 14079: 2325178, 141
[2026-01-10 12:18:21] 2026-01-10 17:17:45,744 | INFO     | --------------------------------------------------
[2026-01-10 12:18:21] 2026-01-10 17:17:45,744 | INFO     | 
[2026-01-10 12:18:21] 2026-01-10 17:17:45,744 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 12:18:21] 2026-01-10 17:17:45,919 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,919 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,920 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,920 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,920 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,920 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,920 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,920 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,920 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,921 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,921 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,921 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,921 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,921 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,921 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,921 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,922 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,922 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 12:18:21] 2026-01-10 17:17:45,922 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,922 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 12:18:21] 2026-01-10 17:17:45,922 | INFO     | job 6965384385 has completed (purged errors)
[2026-01-10 12:18:21] 2026-01-10 17:17:45,945 | INFO     | overall cleanup function is called
[2026-01-10 12:18:21] 2026-01-10 17:17:47,011 | INFO     | --- collectZombieJob: --- 10, [2574941]
[2026-01-10 12:18:21] 2026-01-10 17:17:47,012 | INFO     | zombie collector waiting for pid 2574941
[2026-01-10 12:18:21] 2026-01-10 17:17:47,012 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 12:18:21] 2026-01-10 17:17:47,012 | INFO     | collected zombie processes
[2026-01-10 12:18:21] 2026-01-10 17:17:47,012 | INFO     | will attempt to kill all subprocesses of pid=2574941
[2026-01-10 12:18:21] 2026-01-10 17:17:48,164 | INFO     | process IDs to be killed: [2574941] (in reverse order)
[2026-01-10 12:18:21] 2026-01-10 17:17:48,896 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 12:18:21] 2026-01-10 17:17:48,897 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 12:18:21] 2026-01-10 17:17:49,032 | INFO     | did not find any defunct processes belonging to 2574941
[2026-01-10 12:18:21] 2026-01-10 17:17:49,181 | INFO     | did not find any defunct processes belonging to 2574941
[2026-01-10 12:18:21] 2026-01-10 17:17:49,181 | INFO     | ready for new job
[2026-01-10 12:18:21] 2026-01-10 17:17:49,182 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 12:18:21] 2026-01-10 17:17:49,213 | INFO     | ***************************************
[2026-01-10 12:18:21] 2026-01-10 17:17:49,213 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 12:18:21] 2026-01-10 17:17:49,214 | INFO     | ***************************************
[2026-01-10 12:18:21] 2026-01-10 17:17:49,214 | INFO     | 
[2026-01-10 12:18:21] 2026-01-10 17:17:49,232 | INFO     | architecture information:
[2026-01-10 12:18:21] 2026-01-10 17:17:49,239 | INFO     | executing command: cat /etc/os-release
[2026-01-10 12:18:21] 2026-01-10 17:17:49,334 | INFO     | cat /etc/os-release:
[2026-01-10 12:18:21] NAME="CentOS Linux"
[2026-01-10 12:18:21] VERSION="7 (Core)"
[2026-01-10 12:18:21] ID="centos"
[2026-01-10 12:18:21] ID_LIKE="rhel fedora"
[2026-01-10 12:18:21] VERSION_ID="7"
[2026-01-10 12:18:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 12:18:21] ANSI_COLOR="0;31"
[2026-01-10 12:18:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 12:18:21] HOME_URL="https://www.centos.org/"
[2026-01-10 12:18:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 12:18:21] 
[2026-01-10 12:18:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 12:18:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 12:18:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 12:18:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 12:18:21] 
[2026-01-10 12:18:21] 2026-01-10 17:17:49,334 | INFO     | ***************************************
[2026-01-10 12:18:21] 2026-01-10 17:17:49,838 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 12:18:21] 2026-01-10 17:17:49,905 | INFO     | sufficient remaining disk space (63469256704 B)
[2026-01-10 12:18:21] 2026-01-10 17:17:49,905 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 12:18:21] 2026-01-10 17:17:49,906 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 12:18:21] 2026-01-10 17:17:49,906 | INFO     | update_server=False
[2026-01-10 12:18:21] 2026-01-10 17:17:49,906 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 12:18:21] 2026-01-10 17:17:49,906 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:18:21] 2026-01-10 17:17:49,906 | INFO     | aborting loop
[2026-01-10 12:18:21] 2026-01-10 17:17:50,164 | INFO     | all job control threads have been joined
[2026-01-10 12:18:21] 2026-01-10 17:17:50,250 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 12:18:21] 2026-01-10 17:17:50,388 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 12:18:21] 2026-01-10 17:17:50,529 | INFO     | all payload control threads have been joined
[2026-01-10 12:18:21] 2026-01-10 17:17:50,646 | INFO     | all data control threads have been joined
[2026-01-10 12:18:21] 2026-01-10 17:17:50,765 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:18:21] 2026-01-10 17:17:50,914 | INFO     | [job] retrieve thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:50,914 | INFO     | [job] job monitor thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:51,179 | INFO     | [job] control thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:51,536 | INFO     | [payload] control thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:51,538 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:51,652 | INFO     | [data] control thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:51,692 | INFO     | [payload] validate_post thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:51,772 | INFO     | [job] queue monitor thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:51,946 | INFO     | [job] validate thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:51,973 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:52,044 | INFO     | [data] copytool_in thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:52,044 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:52,258 | INFO     | [data] copytool_out thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:52,329 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:52,362 | INFO     | [payload] failed_post thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:54,398 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 12:18:21] 2026-01-10 17:17:57,329 | INFO     | [monitor] cgroup control has ended
[2026-01-10 12:18:21] 2026-01-10 17:17:58,508 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140518491924288)>', '<ExcThread(monitor, started 140517757146880)>']
[2026-01-10 12:18:21] 2026-01-10 17:18:03,533 | INFO     | all workflow threads have been joined
[2026-01-10 12:18:21] 2026-01-10 17:18:03,534 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 12:18:21] 2026-01-10 17:18:03,534 | INFO     | traces error code: 0
[2026-01-10 12:18:21] 2026-01-10 17:18:03,535 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 12:18:21] 2026-01-10 17:18:19,648 | INFO     | PID=2552962 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 12:18:21] 2026-01-10 17:18:19,648 | INFO     | .. there are 30 such processes running
[2026-01-10 12:18:21] 2026-01-10 17:18:19,649 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 12:18:21] 2026-01-10 17:18:19,649 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 12:18:21] 2026-01-10 17:18:19,650 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 12:18:21] 2026-01-10 17:18:19,650 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 12:18:21] 2026-01-10 17:18:19,650 | INFO     | [monitor] control thread has ended
[2026-01-10 12:18:21] 2026-01-10 17:18:20,001 [wrapper] ==== pilot stdout END ====
[2026-01-10 12:18:21] 2026-01-10 17:18:20,015 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 12:18:21] 2026-01-10 17:18:20,047 [wrapper] pilotpid: 2552962
[2026-01-10 12:18:21] 2026-01-10 17:18:20,111 [wrapper] Pilot exit status: 0
[2026-01-10 12:18:21] 2026-01-10 17:18:20,359 [wrapper] pandaids: 6965384385
[2026-01-10 12:18:21] 2026-01-10 17:18:20,873 [wrapper] cleanup supervisor_pilot 3873762 2552963
[2026-01-10 12:18:21] 2026-01-10 17:18:20,904 [wrapper] Test setup, not cleaning
[2026-01-10 12:18:21] 2026-01-10 17:18:20,917 [wrapper] apfmon messages muted
[2026-01-10 12:18:21] 2026-01-10 17:18:20,921 [wrapper] ==== wrapper stdout END ====
[2026-01-10 12:18:21] 2026-01-10 17:18:20,925 [wrapper] ==== wrapper stderr END ====
[2026-01-10 12:18:21]  *** Error codes and diagnostics ***
[2026-01-10 12:18:21]     "exeErrorCode": 0,
[2026-01-10 12:18:21]     "exeErrorDiag": "",
[2026-01-10 12:18:21]     "pilotErrorCode": 0,
[2026-01-10 12:18:21]     "pilotErrorDiag": "",
[2026-01-10 12:18:21]  *** Listing of results directory ***
[2026-01-10 12:18:21] total 436388
[2026-01-10 12:18:21] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:13 queuedata.json
[2026-01-10 12:18:21] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 12:18:21] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 12:18:21] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 12:18:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:20 run_atlas
[2026-01-10 12:18:21] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:20 job.xml
[2026-01-10 12:18:21] -rw-r--r--. 2 boincer umatlas 391182854 Jan 10 08:20 EVNT.47962006._000032.pool.root.1
[2026-01-10 12:18:21] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:20 start_atlas.sh
[2026-01-10 12:18:21] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:20 shared
[2026-01-10 12:18:21] -rw-r--r--. 2 boincer umatlas    592610 Jan 10 08:20 input.tar.gz
[2026-01-10 12:18:21] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:20 boinc_lockfile
[2026-01-10 12:18:21] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 08:20 pandaJob.out
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas        57 Jan 10 08:20 setup.sh.local
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas    989556 Jan 10 08:21 agis_schedconf.cvmfs.json
[2026-01-10 12:18:21] drwx------. 5 boincer umatlas      4096 Jan 10 08:21 pilot3
[2026-01-10 12:18:21] -rw-r--r--. 1 boincer umatlas       531 Jan 10 11:08 boinc_task_state.xml
[2026-01-10 12:18:21] -rw-r--r--. 1 boincer umatlas      6612 Jan 10 12:13 init_data.xml
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas  45083298 Jan 10 12:16 HITS.47962010._002521.pool.root.1
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas      1043 Jan 10 12:16 memory_monitor_summary.json
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas   1516240 Jan 10 12:17 agis_ddmendpoints.agis.ALL.json
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas   1731252 Jan 10 12:17 log.47962010._002521.job.log.tgz.1
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas      8578 Jan 10 12:17 heartbeat.json
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas        95 Jan 10 12:18 pilot_heartbeat.json
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas       823 Jan 10 12:18 pilotlog.txt
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas   1612665 Jan 10 12:18 log.47962010._002521.job.log.1
[2026-01-10 12:18:21] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 12:18 boinc_mmap_file
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas       353 Jan 10 12:18 output.list
[2026-01-10 12:18:21] -rw-r--r--. 1 boincer umatlas       620 Jan 10 12:18 runtime_log
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas   3358720 Jan 10 12:18 result.tar.gz
[2026-01-10 12:18:21] -rw-r--r--. 1 boincer umatlas      9340 Jan 10 12:18 runtime_log.err
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas       655 Jan 10 12:18 25fLDmSyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgZhKDm9g8NJn.diag
[2026-01-10 12:18:21] -rw-r--r--. 1 boincer umatlas        28 Jan 10 12:18 wrapper_checkpoint.txt
[2026-01-10 12:18:21] -rw-r--r--. 1 boincer umatlas     21783 Jan 10 12:18 stderr.txt
[2026-01-10 12:18:21] HITS file was successfully produced:
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas 45083298 Jan 10 12:16 shared/HITS.pool.root.1
[2026-01-10 12:18:21]  *** Contents of shared directory: ***
[2026-01-10 12:18:21] total 429924
[2026-01-10 12:18:21] -rw-r--r--. 2 boincer umatlas 391182854 Jan 10 08:20 ATLAS.root_0
[2026-01-10 12:18:21] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:20 start_atlas.sh
[2026-01-10 12:18:21] -rw-r--r--. 2 boincer umatlas    592610 Jan 10 08:20 input.tar.gz
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas  45083298 Jan 10 12:16 HITS.pool.root.1
[2026-01-10 12:18:21] -rw-------. 1 boincer umatlas   3358720 Jan 10 12:18 result.tar.gz
12:18:23 (2545594): run_atlas exited; CPU time 21473.163137
12:18:23 (2545594): called boinc_finish(0)

</stderr_txt>
]]>

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