Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:55:58 (376019): wrapper (7.7.26015): starting
11:55:58 (376019): wrapper: running run_atlas (--nthreads 9)
[2026-01-10 11:55:58] Arguments: --nthreads 9
[2026-01-10 11:55:58] Threads: 9
[2026-01-10 11:55:58] Checking for CVMFS
[2026-01-10 11:55:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 11:55:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 11:55:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 11:55:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 11:55:59] 2.13.3.0 14337 95066 410396 154986 3 400 30660191 40960001 10641 16776704 0 408532931 99.636 404881432 38010 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 11:55:59] CVMFS is ok
[2026-01-10 11:55:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 11:55:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 11:55:59] Further information can be found at the LHC@home message board.
[2026-01-10 11:55:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 11:55:59] Checking for apptainer binary...
[2026-01-10 11:55:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 11:55:59] Running /usr/bin/apptainer --version
[2026-01-10 11:55:59] apptainer version 1.4.5-2.el9
[2026-01-10 11:55:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 11:55:59] c7-10-12.aglt2.org
[2026-01-10 11:55:59] apptainer works
[2026-01-10 11:55:59] Set ATHENA_PROC_NUMBER=9
[2026-01-10 11:55:59] Set ATHENA_CORE_NUMBER=9
[2026-01-10 11:55:59] Starting ATLAS job with PandaID=6965384309
[2026-01-10 11:55:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 12:43:41]  *** The last 200 lines of the pilot log: ***
[2026-01-10 12:43:41] 2026-01-10 17:42:42,330 | INFO     | job 6965384309 has state=finished
[2026-01-10 12:43:41] 2026-01-10 17:42:42,331 | INFO     | preparing for final server update for job 6965384309 in state='finished'
[2026-01-10 12:43:41] 2026-01-10 17:42:42,331 | INFO     | this job has now completed (state=finished)
[2026-01-10 12:43:41] 2026-01-10 17:42:42,331 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 12:43:41] 2026-01-10 17:42:42,331 | INFO     | log transfer has been attempted: DONE
[2026-01-10 12:43:41] 2026-01-10 17:42:42,331 | INFO     | job 6965384309 has finished - writing final server update
[2026-01-10 12:43:41] 2026-01-10 17:42:42,332 | INFO     | total number of processed events: 50 (read)
[2026-01-10 12:43:41] 2026-01-10 17:42:42,357 | INFO     | executing command: lscpu
[2026-01-10 12:43:41] 2026-01-10 17:42:42,844 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 12:43:41] 2026-01-10 17:42:43,599 | INFO     | time since job start (2788s) is within the limit (349056.0s)
[2026-01-10 12:43:41] 2026-01-10 17:42:44,208 | INFO     | monitor loop #199: job 0:6965384309 is in state 'finished'
[2026-01-10 12:43:41] 2026-01-10 17:42:44,209 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:43:41] 2026-01-10 17:42:45,606 | INFO     | time since job start (2790s) is within the limit (349056.0s)
[2026-01-10 12:43:41] 2026-01-10 17:42:46,713 | INFO     | monitor loop #200: job 0:6965384309 is in state 'finished'
[2026-01-10 12:43:41] 2026-01-10 17:42:46,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:43:41] 2026-01-10 17:42:47,613 | INFO     | time since job start (2792s) is within the limit (349056.0s)
[2026-01-10 12:43:41] 2026-01-10 17:42:49,222 | INFO     | monitor loop #201: job 0:6965384309 is in state 'finished'
[2026-01-10 12:43:41] 2026-01-10 17:42:49,223 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:43:41] 2026-01-10 17:42:49,391 | INFO     | PID=380067 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 12:43:41] 2026-01-10 17:42:49,392 | INFO     | .. there are 11 such processes running
[2026-01-10 12:43:41] 2026-01-10 17:42:50,392 | INFO     | time since job start (2795s) is within the limit (349056.0s)
[2026-01-10 12:43:41] 2026-01-10 17:42:51,729 | INFO     | monitor loop #202: job 0:6965384309 is in state 'finished'
[2026-01-10 12:43:41] 2026-01-10 17:42:51,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:43:41] 2026-01-10 17:42:52,398 | INFO     | time since job start (2797s) is within the limit (349056.0s)
[2026-01-10 12:43:41] 2026-01-10 17:42:54,235 | INFO     | monitor loop #203: job 0:6965384309 is in state 'finished'
[2026-01-10 12:43:41] 2026-01-10 17:42:54,236 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:43:41] 2026-01-10 17:42:54,405 | INFO     | time since job start (2799s) is within the limit (349056.0s)
[2026-01-10 12:43:41] 2026-01-10 17:42:56,412 | INFO     | time since job start (2801s) is within the limit (349056.0s)
[2026-01-10 12:43:41] 2026-01-10 17:42:56,742 | INFO     | monitor loop #204: job 0:6965384309 is in state 'finished'
[2026-01-10 12:43:41] 2026-01-10 17:42:56,742 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:43:41] 2026-01-10 17:42:58,428 | INFO     | time since job start (2803s) is within the limit (349056.0s)
[2026-01-10 12:43:41] 2026-01-10 17:42:59,247 | INFO     | monitor loop #205: job 0:6965384309 is in state 'finished'
[2026-01-10 12:43:41] 2026-01-10 17:42:59,248 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:43:41] 2026-01-10 17:43:00,438 | INFO     | time since job start (2805s) is within the limit (349056.0s)
[2026-01-10 12:43:41] 2026-01-10 17:43:01,754 | INFO     | monitor loop #206: job 0:6965384309 is in state 'finished'
[2026-01-10 12:43:41] 2026-01-10 17:43:01,754 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:43:41] 2026-01-10 17:43:02,446 | INFO     | time since job start (2807s) is within the limit (349056.0s)
[2026-01-10 12:43:41] 2026-01-10 17:43:04,259 | INFO     | monitor loop #207: job 0:6965384309 is in state 'finished'
[2026-01-10 12:43:41] 2026-01-10 17:43:04,260 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:43:41] 2026-01-10 17:43:04,453 | INFO     | time since job start (2809s) is within the limit (349056.0s)
[2026-01-10 12:43:41] 2026-01-10 17:43:05,096 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 12:43:41] 2026-01-10 17:43:05,109 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3278.4100468749994
[2026-01-10 12:43:41] 2026-01-10 17:43:05,159 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6965384309/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 12:43:41] 2026-01-10 17:43:05,160 | INFO     | extracted standard info from prmon json
[2026-01-10 12:43:41] 2026-01-10 17:43:05,160 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 12:43:41] 2026-01-10 17:43:05,160 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 12:43:41] 2026-01-10 17:43:05,161 | INFO     | fitting pss+swap vs Time
[2026-01-10 12:43:41] 2026-01-10 17:43:05,161 | INFO     | sum of square deviations: 16977998.552631587
[2026-01-10 12:43:41] 2026-01-10 17:43:05,177 | INFO     | sum of deviations: -12809972385.868422
[2026-01-10 12:43:41] 2026-01-10 17:43:05,178 | INFO     | mean x: 1768065652.6578948
[2026-01-10 12:43:41] 2026-01-10 17:43:05,178 | INFO     | mean y: 2406329.3947368423
[2026-01-10 12:43:41] 2026-01-10 17:43:05,178 | INFO     | intersect: 1334015489010.421
[2026-01-10 12:43:41] 2026-01-10 17:43:05,178 | INFO     | chi2: 4.137098552868283
[2026-01-10 12:43:41] 2026-01-10 17:43:05,178 | INFO     | current memory leak: -754.50 B/s (using 38 data points, chi2=4.14)
[2026-01-10 12:43:41] 2026-01-10 17:43:05,178 | INFO     | could have reported an average CPU frequency of 3260 MHz (5 samples)
[2026-01-10 12:43:41] 2026-01-10 17:43:05,179 | INFO     | ..............................
[2026-01-10 12:43:41] 2026-01-10 17:43:05,179 | INFO     | . Timing measurements:
[2026-01-10 12:43:41] 2026-01-10 17:43:05,179 | INFO     | . get job = 0 s
[2026-01-10 12:43:41] 2026-01-10 17:43:05,179 | INFO     | . initial setup = 2 s
[2026-01-10 12:43:41] 2026-01-10 17:43:05,179 | INFO     | . payload setup = 12 s
[2026-01-10 12:43:41] 2026-01-10 17:43:05,179 | INFO     | . stage-in = 0 s
[2026-01-10 12:43:41] 2026-01-10 17:43:05,179 | INFO     | . payload execution = 2740 s
[2026-01-10 12:43:41] 2026-01-10 17:43:05,179 | INFO     | . stage-out = 5 s
[2026-01-10 12:43:41] 2026-01-10 17:43:05,179 | INFO     | . log creation = 2 s
[2026-01-10 12:43:41] 2026-01-10 17:43:05,179 | INFO     | ..............................
[2026-01-10 12:43:41] 2026-01-10 17:43:05,276 | INFO     | 
[2026-01-10 12:43:41] 2026-01-10 17:43:05,276 | INFO     | job summary report
[2026-01-10 12:43:41] 2026-01-10 17:43:05,276 | INFO     | --------------------------------------------------
[2026-01-10 12:43:41] 2026-01-10 17:43:05,276 | INFO     | PanDA job id: 6965384309
[2026-01-10 12:43:41] 2026-01-10 17:43:05,276 | INFO     | task id: 47962010
[2026-01-10 12:43:41] 2026-01-10 17:43:05,276 | INFO     | errors: (none)
[2026-01-10 12:43:41] 2026-01-10 17:43:05,276 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 12:43:41] 2026-01-10 17:43:05,276 | INFO     | pilot state: finished 
[2026-01-10 12:43:41] 2026-01-10 17:43:05,276 | INFO     | transexitcode: 0
[2026-01-10 12:43:41] 2026-01-10 17:43:05,276 | INFO     | exeerrorcode: 0
[2026-01-10 12:43:41] 2026-01-10 17:43:05,276 | INFO     | exeerrordiag: 
[2026-01-10 12:43:41] 2026-01-10 17:43:05,277 | INFO     | exitcode: 0
[2026-01-10 12:43:41] 2026-01-10 17:43:05,277 | INFO     | exitmsg: OK
[2026-01-10 12:43:41] 2026-01-10 17:43:05,277 | INFO     | cpuconsumptiontime: 11745 s
[2026-01-10 12:43:41] 2026-01-10 17:43:05,277 | INFO     | nevents: 50
[2026-01-10 12:43:41] 2026-01-10 17:43:05,277 | INFO     | neventsw: 0
[2026-01-10 12:43:41] 2026-01-10 17:43:05,277 | INFO     | pid: 386519
[2026-01-10 12:43:41] 2026-01-10 17:43:05,277 | INFO     | pgrp: 386519
[2026-01-10 12:43:41] 2026-01-10 17:43:05,277 | INFO     | corecount: 9
[2026-01-10 12:43:41] 2026-01-10 17:43:05,277 | INFO     | event service: False
[2026-01-10 12:43:41] 2026-01-10 17:43:05,277 | INFO     | sizes: {0: 2284569, 1: 2284569, 7: 2284859, 11: 2284887, 2757: 2310935, 2762: 2319929, 2765: 2320113, 2791: 2320391}
[2026-01-10 12:43:41] 2026-01-10 17:43:05,277 | INFO     | --------------------------------------------------
[2026-01-10 12:43:41] 2026-01-10 17:43:05,277 | INFO     | 
[2026-01-10 12:43:41] 2026-01-10 17:43:05,277 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-10 12:43:41] 2026-01-10 17:43:05,435 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,436 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,436 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,436 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,436 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,436 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,436 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,436 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,436 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,436 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,436 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,437 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,437 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,437 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,437 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,437 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 12:43:41] 2026-01-10 17:43:05,437 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,437 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 12:43:41] 2026-01-10 17:43:05,437 | INFO     | job 6965384309 has completed (purged errors)
[2026-01-10 12:43:41] 2026-01-10 17:43:05,437 | INFO     | overall cleanup function is called
[2026-01-10 12:43:41] 2026-01-10 17:43:06,501 | INFO     | --- collectZombieJob: --- 10, [386519]
[2026-01-10 12:43:41] 2026-01-10 17:43:06,501 | INFO     | zombie collector waiting for pid 386519
[2026-01-10 12:43:41] 2026-01-10 17:43:06,502 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 12:43:41] 2026-01-10 17:43:06,502 | INFO     | collected zombie processes
[2026-01-10 12:43:41] 2026-01-10 17:43:06,502 | INFO     | will attempt to kill all subprocesses of pid=386519
[2026-01-10 12:43:41] 2026-01-10 17:43:07,075 | INFO     | process IDs to be killed: [386519] (in reverse order)
[2026-01-10 12:43:41] 2026-01-10 17:43:07,655 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 12:43:41] 2026-01-10 17:43:07,655 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 12:43:41] 2026-01-10 17:43:07,681 | INFO     | did not find any defunct processes belonging to 386519
[2026-01-10 12:43:41] 2026-01-10 17:43:07,707 | INFO     | did not find any defunct processes belonging to 386519
[2026-01-10 12:43:41] 2026-01-10 17:43:07,707 | INFO     | ready for new job
[2026-01-10 12:43:41] 2026-01-10 17:43:07,707 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 12:43:41] 2026-01-10 17:43:07,710 | INFO     | ***************************************
[2026-01-10 12:43:41] 2026-01-10 17:43:07,710 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 12:43:41] 2026-01-10 17:43:07,710 | INFO     | ***************************************
[2026-01-10 12:43:41] 2026-01-10 17:43:07,710 | INFO     | 
[2026-01-10 12:43:41] 2026-01-10 17:43:07,739 | INFO     | architecture information:
[2026-01-10 12:43:41] 2026-01-10 17:43:07,766 | INFO     | executing command: cat /etc/os-release
[2026-01-10 12:43:41] 2026-01-10 17:43:07,904 | INFO     | cat /etc/os-release:
[2026-01-10 12:43:41] NAME="CentOS Linux"
[2026-01-10 12:43:41] VERSION="7 (Core)"
[2026-01-10 12:43:41] ID="centos"
[2026-01-10 12:43:41] ID_LIKE="rhel fedora"
[2026-01-10 12:43:41] VERSION_ID="7"
[2026-01-10 12:43:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 12:43:41] ANSI_COLOR="0;31"
[2026-01-10 12:43:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 12:43:41] HOME_URL="https://www.centos.org/"
[2026-01-10 12:43:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 12:43:41] 
[2026-01-10 12:43:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 12:43:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 12:43:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 12:43:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 12:43:41] 
[2026-01-10 12:43:41] 2026-01-10 17:43:07,904 | INFO     | ***************************************
[2026-01-10 12:43:41] 2026-01-10 17:43:08,407 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-10 12:43:41] 2026-01-10 17:43:08,575 | INFO     | sufficient remaining disk space (84993376256 B)
[2026-01-10 12:43:41] 2026-01-10 17:43:08,576 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 12:43:41] 2026-01-10 17:43:08,576 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 12:43:41] 2026-01-10 17:43:08,576 | INFO     | update_server=False
[2026-01-10 12:43:41] 2026-01-10 17:43:08,576 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 12:43:41] 2026-01-10 17:43:08,577 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:43:41] 2026-01-10 17:43:08,578 | INFO     | aborting loop
[2026-01-10 12:43:41] 2026-01-10 17:43:08,578 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 12:43:41] 2026-01-10 17:43:08,810 | INFO     | all data control threads have been joined
[2026-01-10 12:43:41] 2026-01-10 17:43:09,245 | INFO     | all job control threads have been joined
[2026-01-10 12:43:41] 2026-01-10 17:43:09,484 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 12:43:41] 2026-01-10 17:43:09,582 | INFO     | [job] retrieve thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:09,583 | INFO     | [job] job monitor thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:09,817 | INFO     | [data] control thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:09,937 | INFO     | [payload] failed_post thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:10,071 | INFO     | all payload control threads have been joined
[2026-01-10 12:43:41] 2026-01-10 17:43:10,251 | INFO     | [job] control thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:10,299 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:43:41] 2026-01-10 17:43:10,447 | INFO     | [data] copytool_in thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:10,449 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:10,449 | INFO     | [job] validate thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:10,450 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:10,549 | INFO     | [payload] validate_post thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:10,915 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:10,955 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:11,077 | INFO     | [payload] control thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:11,305 | INFO     | [job] queue monitor thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:11,491 | INFO     | [data] copytool_out thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:12,586 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 12:43:41] 2026-01-10 17:43:20,162 | INFO     | [monitor] cgroup control has ended
[2026-01-10 12:43:41] 2026-01-10 17:43:20,669 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140557048485696)>', '<ExcThread(monitor, started 140556428637952)>']
[2026-01-10 12:43:41] 2026-01-10 17:43:25,697 | INFO     | all workflow threads have been joined
[2026-01-10 12:43:41] 2026-01-10 17:43:25,698 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 12:43:41] 2026-01-10 17:43:25,698 | INFO     | traces error code: 0
[2026-01-10 12:43:41] 2026-01-10 17:43:25,698 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 12:43:41] 2026-01-10 17:43:39,207 | INFO     | PID=380067 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 12:43:41] 2026-01-10 17:43:39,208 | INFO     | .. there are 11 such processes running
[2026-01-10 12:43:41] 2026-01-10 17:43:39,208 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 12:43:41] 2026-01-10 17:43:39,208 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 12:43:41] 2026-01-10 17:43:39,208 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 12:43:41] 2026-01-10 17:43:39,209 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 12:43:41] 2026-01-10 17:43:39,210 | INFO     | [monitor] control thread has ended
[2026-01-10 12:43:41] 2026-01-10 17:43:39,546 [wrapper] ==== pilot stdout END ====
[2026-01-10 12:43:41] 2026-01-10 17:43:39,582 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 12:43:41] 2026-01-10 17:43:39,638 [wrapper] pilotpid: 380067
[2026-01-10 12:43:41] 2026-01-10 17:43:39,664 [wrapper] Pilot exit status: 0
[2026-01-10 12:43:41] 2026-01-10 17:43:39,793 [wrapper] pandaids: 6965384309
[2026-01-10 12:43:41] 2026-01-10 17:43:40,770 [wrapper] cleanup supervisor_pilot  498414 380068
[2026-01-10 12:43:41] 2026-01-10 17:43:40,776 [wrapper] Test setup, not cleaning
[2026-01-10 12:43:41] 2026-01-10 17:43:40,802 [wrapper] apfmon messages muted
[2026-01-10 12:43:41] 2026-01-10 17:43:40,852 [wrapper] ==== wrapper stdout END ====
[2026-01-10 12:43:41] 2026-01-10 17:43:40,898 [wrapper] ==== wrapper stderr END ====
[2026-01-10 12:43:41]  *** Error codes and diagnostics ***
[2026-01-10 12:43:41]     "exeErrorCode": 0,
[2026-01-10 12:43:41]     "exeErrorDiag": "",
[2026-01-10 12:43:41]     "pilotErrorCode": 0,
[2026-01-10 12:43:41]     "pilotErrorDiag": "",
[2026-01-10 12:43:41]  *** Listing of results directory ***
[2026-01-10 12:43:41] total 436176
[2026-01-10 12:43:41] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:13 queuedata.json
[2026-01-10 12:43:41] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 12:43:41] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 12:43:41] -rw-r--r--. 1 boincer umatlas       100 Jan 10 11:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 12:43:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 11:55 run_atlas
[2026-01-10 12:43:41] -rw-r--r--. 1 boincer umatlas       105 Jan 10 11:55 job.xml
[2026-01-10 12:43:41] -rw-r--r--. 2 boincer umatlas 396184497 Jan 10 11:55 EVNT.47962006._000013.pool.root.1
[2026-01-10 12:43:41] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 11:55 start_atlas.sh
[2026-01-10 12:43:41] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 11:55 shared
[2026-01-10 12:43:41] -rw-r--r--. 2 boincer umatlas    592613 Jan 10 11:55 input.tar.gz
[2026-01-10 12:43:41] -rw-r--r--. 1 boincer umatlas         0 Jan 10 11:55 boinc_lockfile
[2026-01-10 12:43:41] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 11:55 pandaJob.out
[2026-01-10 12:43:41] -rw-------. 1 boincer umatlas        57 Jan 10 11:56 setup.sh.local
[2026-01-10 12:43:41] -rw-------. 1 boincer umatlas    989556 Jan 10 11:56 agis_schedconf.cvmfs.json
[2026-01-10 12:43:41] -rw-------. 1 boincer umatlas   1516240 Jan 10 11:56 agis_ddmendpoints.agis.ALL.json
[2026-01-10 12:43:41] drwx------. 5 boincer umatlas      4096 Jan 10 11:56 pilot3
[2026-01-10 12:43:41] -rw-r--r--. 1 boincer umatlas       529 Jan 10 12:30 boinc_task_state.xml
[2026-01-10 12:43:41] -rw-r--r--. 1 boincer umatlas      6902 Jan 10 12:39 init_data.xml
[2026-01-10 12:43:41] -rw-------. 1 boincer umatlas  43127874 Jan 10 12:42 HITS.47962010._002450.pool.root.1
[2026-01-10 12:43:41] -rw-------. 1 boincer umatlas      1022 Jan 10 12:42 memory_monitor_summary.json
[2026-01-10 12:43:41] -rw-------. 1 boincer umatlas   1271606 Jan 10 12:42 log.47962010._002450.job.log.tgz.1
[2026-01-10 12:43:41] -rw-------. 1 boincer umatlas        95 Jan 10 12:42 pilot_heartbeat.json
[2026-01-10 12:43:41] -rw-------. 1 boincer umatlas      8540 Jan 10 12:43 heartbeat.json
[2026-01-10 12:43:41] -rw-------. 1 boincer umatlas       822 Jan 10 12:43 pilotlog.txt
[2026-01-10 12:43:41] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 12:43 boinc_mmap_file
[2026-01-10 12:43:41] -rw-------. 1 boincer umatlas    436283 Jan 10 12:43 log.47962010._002450.job.log.1
[2026-01-10 12:43:41] -rw-r--r--. 1 boincer umatlas        27 Jan 10 12:43 wrapper_checkpoint.txt
[2026-01-10 12:43:41] -rw-------. 1 boincer umatlas       353 Jan 10 12:43 output.list
[2026-01-10 12:43:41] -rw-r--r--. 1 boincer umatlas       620 Jan 10 12:43 runtime_log
[2026-01-10 12:43:41] -rw-------. 1 boincer umatlas   1730560 Jan 10 12:43 result.tar.gz
[2026-01-10 12:43:41] -rw-r--r--. 1 boincer umatlas      9342 Jan 10 12:43 runtime_log.err
[2026-01-10 12:43:41] -rw-------. 1 boincer umatlas       652 Jan 10 12:43 gfFLDmSyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMZhKDmu2VvPn.diag
[2026-01-10 12:43:41] -rw-r--r--. 1 boincer umatlas     22394 Jan 10 12:43 stderr.txt
[2026-01-10 12:43:42] HITS file was successfully produced:
[2026-01-10 12:43:42] -rw-------. 1 boincer umatlas 43127874 Jan 10 12:42 shared/HITS.pool.root.1
[2026-01-10 12:43:42]  *** Contents of shared directory: ***
[2026-01-10 12:43:42] total 431308
[2026-01-10 12:43:42] -rw-r--r--. 2 boincer umatlas 396184497 Jan 10 11:55 ATLAS.root_0
[2026-01-10 12:43:42] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 11:55 start_atlas.sh
[2026-01-10 12:43:42] -rw-r--r--. 2 boincer umatlas    592613 Jan 10 11:55 input.tar.gz
[2026-01-10 12:43:42] -rw-------. 1 boincer umatlas  43127874 Jan 10 12:42 HITS.pool.root.1
[2026-01-10 12:43:42] -rw-------. 1 boincer umatlas   1730560 Jan 10 12:43 result.tar.gz
12:43:43 (376019): run_atlas exited; CPU time 11722.053587
12:43:43 (376019): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN