Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
09:43:13 (586249): wrapper (7.7.26015): starting
09:43:13 (586249): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 09:43:13] Arguments: --nthreads 4
[2026-01-11 09:43:13] Threads: 4
[2026-01-11 09:43:13] Checking for CVMFS
[2026-01-11 09:43:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 09:43:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 09:43:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 09:43:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 09:43:14] 2.13.3.0 1712136 5487 59260 155010 1 131 3102718 4194304 1692 130560 41 8306324 99.930 950647 265 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-11 09:43:14] CVMFS is ok
[2026-01-11 09:43:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 09:43:14] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-11 09:43:14] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-11 09:43:14] Further information can be found at the LHC@home message board.
[2026-01-11 09:43:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 09:43:14] Checking for apptainer binary...
[2026-01-11 09:43:14] apptainer is not installed, using version from CVMFS
[2026-01-11 09:43:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 09:43:14] Ryze
[2026-01-11 09:43:14] apptainer works
[2026-01-11 09:43:14] Set ATHENA_PROC_NUMBER=4
[2026-01-11 09:43:14] Set ATHENA_CORE_NUMBER=4
[2026-01-11 09:43:14] Starting ATLAS job with PandaID=6965384067
[2026-01-11 09:43:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 10:55:36]  *** The last 200 lines of the pilot log: ***
[2026-01-11 10:55:36] 2026-01-11 09:54:36,178 | INFO     | intersect: 1122238039426.8777
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | chi2: 6.361977028176609
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | current memory leak: -634.70 B/s (using 61 data points, chi2=6.36)
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | could have reported an average CPU frequency of 3709 MHz (6 samples)
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | ..............................
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . Timing measurements:
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . get job = 0 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . initial setup = 4 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . payload setup = 4 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . stage-in = 0 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . payload execution = 4130 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . stage-out = 0 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . log creation = 0 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | ..............................
[2026-01-11 10:55:36] 2026-01-11 09:54:36,180 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-11 10:55:36] 2026-01-11 09:54:36,180 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/6/PanDA_Pilot-6965384067/pilotlog.txt
[2026-01-11 10:55:36] 2026-01-11 09:54:36,194 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-11 10:55:36] - Log from pilotlog.txt -
[2026-01-11 10:55:36] 2026-01-11 09:54:36,178 | INFO     | sum of square deviations: 70364110.0
[2026-01-11 10:55:36] 2026-01-11 09:54:36,178 | INFO     | sum of deviations: -44660451855.0
[2026-01-11 10:55:36] 2026-01-11 09:54:36,178 | INFO     | mean x: 1768123161.0
[2026-01-11 10:55:36] 2026-01-11 09:54:36,178 | INFO     | mean y: 1443162.8032786886
[2026-01-11 10:55:36] 2026-01-11 09:54:36,178 | INFO     | intersect: 1122238039426.8777
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | chi2: 6.361977028176609
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | current memory leak: -634.70 B/s (using 61 data points, chi2=6.36)
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | could have reported an average CPU frequency of 3709 MHz (6 samples)
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | ..............................
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . Timing measurements:
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . get job = 0 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . initial setup = 4 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . payload setup = 4 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . stage-in = 0 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . payload execution = 4130 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . stage-out = 0 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . log creation = 0 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | ..............................
[2026-01-11 10:55:36] 2026-01-11 09:54:36,180 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-11 10:55:36] 2026-01-11 09:54:36,180 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/6/PanDA_Pilot-6965384067/pilotlog.txt
[2026-01-11 10:55:36] 2026-01-11 09:54:36,194 | WARNING  | 
[2026-01-11 10:55:36] [begin log extracts]
[2026-01-11 10:55:36] - Log from pilotlog.txt -
[2026-01-11 10:55:36] 2026-01-11 09:54:36,178 | INFO     | sum of square deviations: 70364110.0
[2026-01-11 10:55:36] 2026-01-11 09:54:36,178 | INFO     | sum of deviations: -44660451855.0
[2026-01-11 10:55:36] 2026-01-11 09:54:36,178 | INFO     | mean x: 1768123161.0
[2026-01-11 10:55:36] 2026-01-11 09:54:36,178 | INFO     | mean y: 1443162.8032786886
[2026-01-11 10:55:36] 2026-01-11 09:54:36,178 | INFO     | intersect: 1122238039426.8777
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | chi2: 6.361977028176609
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | current memory leak: -634.70 B/s (using 61 data points, chi2=6.36)
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | could have reported an average CPU frequency of 3709 MHz (6 samples)
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | ..............................
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . Timing measurements:
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . get job = 0 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . initial setup = 4 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . payload setup = 4 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . stage-in = 0 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . payload execution = 4130 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . stage-out = 0 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | . log creation = 0 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,179 | INFO     | ..............................
[2026-01-11 10:55:36] 2026-01-11 09:54:36,180 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-11 10:55:36] 2026-01-11 09:54:36,180 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/6/PanDA_Pilot-6965384067/pilotlog.txt
[2026-01-11 10:55:36] [end log extracts]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,194 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2026-01-11 10:55:36] 2026-01-11 09:54:36,195 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: HITSMergeAthenaMP
[2026-01-11 10:55:36] 2026-01-11 09:54:36,263 | INFO     | 
[2026-01-11 10:55:36] 2026-01-11 09:54:36,263 | INFO     | job summary report
[2026-01-11 10:55:36] 2026-01-11 09:54:36,263 | INFO     | --------------------------------------------------
[2026-01-11 10:55:36] 2026-01-11 09:54:36,263 | INFO     | PanDA job id: 6965384067
[2026-01-11 10:55:36] 2026-01-11 09:54:36,263 | INFO     | task id: 47962010
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-11 10:52:29,666 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | error 2/2: 1165: Local output file is missing
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | pilot state: failed 
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | transexitcode: 65
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | exeerrorcode: 65
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | exeerrordiag: HITSMergeAthenaMP0 got a SIGABRT signal (exit code 134); Logfile error in log.HITSMergeAthenaMP0: "Segmentation fault: Event counter: 0; Run: unknown
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | exitcode: 65
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | exitmsg: HITSMergeAthenaMP0 got a SIGABRT signal (exit code 134); Logfile error in log.HITSMergeAthenaMP0: "Segmentation fault: Event counter: 0; Run: unknown; Evt
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | cpuconsumptiontime: 8281 s
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | nevents: 0
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | neventsw: 0
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | pid: 596642
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | pgrp: 596642
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | corecount: 4
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | event service: False
[2026-01-11 10:55:36] 2026-01-11 09:54:36,264 | INFO     | sizes: {0: 2284405, 1: 2284604, 4: 2284866, 11: 2284894, 4138: 2310657, 4139: 2314957, 4140: 2315141, 4258: 2315387}
[2026-01-11 10:55:36] 2026-01-11 09:54:36,265 | INFO     | --------------------------------------------------
[2026-01-11 10:55:36] 2026-01-11 09:54:36,265 | INFO     | 
[2026-01-11 10:55:36] 2026-01-11 09:54:36,265 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/6
[2026-01-11 10:55:36] 2026-01-11 09:54:36,286 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,286 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,286 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,286 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,286 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,286 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,286 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,286 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,286 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,286 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,287 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,287 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,287 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,287 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,287 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,287 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,287 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,287 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 10:55:36] 2026-01-11 09:54:36,287 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,287 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 10:55:36] 2026-01-11 09:54:36,287 | INFO     | job 6965384067 has completed (purged errors)
[2026-01-11 10:55:36] 2026-01-11 09:54:36,287 | INFO     | overall cleanup function is called
[2026-01-11 10:55:36] 2026-01-11 09:54:37,297 | INFO     | --- collectZombieJob: --- 10, [596642]
[2026-01-11 10:55:36] 2026-01-11 09:54:37,297 | INFO     | zombie collector waiting for pid 596642
[2026-01-11 10:55:36] 2026-01-11 09:54:37,298 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 10:55:36] 2026-01-11 09:54:37,298 | INFO     | collected zombie processes
[2026-01-11 10:55:36] 2026-01-11 09:54:37,298 | INFO     | will attempt to kill all subprocesses of pid=596642
[2026-01-11 10:55:36] 2026-01-11 09:54:37,397 | INFO     | process IDs to be killed: [596642] (in reverse order)
[2026-01-11 10:55:36] 2026-01-11 09:54:37,449 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 10:55:36] 2026-01-11 09:54:37,449 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 10:55:36] 2026-01-11 09:54:37,452 | INFO     | did not find any defunct processes belonging to 596642
[2026-01-11 10:55:36] 2026-01-11 09:54:37,455 | INFO     | did not find any defunct processes belonging to 596642
[2026-01-11 10:55:36] 2026-01-11 09:54:37,455 | INFO     | ready for new job
[2026-01-11 10:55:36] 2026-01-11 09:54:37,455 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 10:55:36] 2026-01-11 09:54:37,456 | INFO     | ***************************************
[2026-01-11 10:55:36] 2026-01-11 09:54:37,456 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 10:55:36] 2026-01-11 09:54:37,456 | INFO     | ***************************************
[2026-01-11 10:55:36] 2026-01-11 09:54:37,457 | INFO     | 
[2026-01-11 10:55:36] 2026-01-11 09:54:37,458 | INFO     | architecture information:
[2026-01-11 10:55:36] 2026-01-11 09:54:37,458 | INFO     | executing command: cat /etc/os-release
[2026-01-11 10:55:36] 2026-01-11 09:54:37,471 | INFO     | cat /etc/os-release:
[2026-01-11 10:55:36] NAME="CentOS Linux"
[2026-01-11 10:55:36] VERSION="7 (Core)"
[2026-01-11 10:55:36] ID="centos"
[2026-01-11 10:55:36] ID_LIKE="rhel fedora"
[2026-01-11 10:55:36] VERSION_ID="7"
[2026-01-11 10:55:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 10:55:36] ANSI_COLOR="0;31"
[2026-01-11 10:55:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 10:55:36] HOME_URL="https://www.centos.org/"
[2026-01-11 10:55:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 10:55:36] 
[2026-01-11 10:55:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 10:55:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 10:55:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 10:55:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 10:55:36] 
[2026-01-11 10:55:36] 2026-01-11 09:54:37,471 | INFO     | ***************************************
[2026-01-11 10:55:36] 2026-01-11 09:54:37,973 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/6
[2026-01-11 10:55:36] 2026-01-11 09:54:37,991 | INFO     | sufficient remaining disk space (3073643642880 B)
[2026-01-11 10:55:36] 2026-01-11 09:54:37,991 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 10:55:36] 2026-01-11 09:54:37,992 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 10:55:36] 2026-01-11 09:54:37,992 | INFO     | update_server=False
[2026-01-11 10:55:36] 2026-01-11 09:54:37,992 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 10:55:36] 2026-01-11 09:54:37,992 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 10:55:36] 2026-01-11 09:54:38,075 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 10:55:36] 2026-01-11 09:54:38,200 | INFO     | all data control threads have been joined
[2026-01-11 10:55:36] 2026-01-11 09:54:38,641 | INFO     | all job control threads have been joined
[2026-01-11 10:55:36] 2026-01-11 09:54:38,770 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 10:55:36] 2026-01-11 09:54:38,771 | INFO     | aborting loop
[2026-01-11 10:55:36] 2026-01-11 09:54:38,996 | INFO     | [job] retrieve thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:54:38,997 | INFO     | [job] queue monitor thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:54:39,204 | INFO     | [data] control thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:54:39,273 | INFO     | all payload control threads have been joined
[2026-01-11 10:55:36] 2026-01-11 09:54:39,383 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:54:39,595 | INFO     | [payload] failed_post thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:54:39,646 | INFO     | [job] control thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:54:39,763 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:54:39,775 | INFO     | [job] job monitor thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:54:39,909 | INFO     | [job] validate thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:54:40,070 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:54:40,080 | INFO     | [data] copytool_out thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:54:40,164 | INFO     | [data] copytool_in thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:54:40,241 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:54:40,278 | INFO     | [payload] control thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:54:40,396 | INFO     | [payload] validate_post thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:54:41,421 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 10:55:36] 2026-01-11 09:54:45,427 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 10:55:36] 2026-01-11 09:55:08,728 | INFO     | PID=590053 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 10:55:36] 2026-01-11 09:55:08,728 | INFO     | .. there are 3 such processes running
[2026-01-11 10:55:36] 2026-01-11 09:55:08,729 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 10:55:36] 2026-01-11 09:55:08,729 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 10:55:36] 2026-01-11 09:55:08,729 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 10:55:36] 2026-01-11 09:55:30,936 | INFO     | [monitor] cgroup control has ended
[2026-01-11 10:55:36] 2026-01-11 09:55:31,422 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 127710232000320)>', '<ExcThread(monitor, started 127709686515456)>']
[2026-01-11 10:55:36] 2026-01-11 09:55:31,837 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 10:55:36] 2026-01-11 09:55:31,837 | INFO     | [monitor] control thread has ended
[2026-01-11 10:55:36] 2026-01-11 09:55:36,447 | INFO     | all workflow threads have been joined
[2026-01-11 10:55:36] 2026-01-11 09:55:36,447 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 10:55:36] 2026-01-11 09:55:36,448 | INFO     | traces error code: 0
[2026-01-11 10:55:36] 2026-01-11 09:55:36,448 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 10:55:36] 2026-01-11 09:55:36,517 [wrapper] ==== pilot stdout END ====
[2026-01-11 10:55:36] 2026-01-11 09:55:36,520 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 10:55:36] 2026-01-11 09:55:36,522 [wrapper] pilotpid: 590053
[2026-01-11 10:55:36] 2026-01-11 09:55:36,524 [wrapper] Pilot exit status: 0
[2026-01-11 10:55:36] 2026-01-11 09:55:36,531 [wrapper] pandaids: 6965384067
[2026-01-11 10:55:36] 2026-01-11 09:55:36,561 [wrapper] cleanup supervisor_pilot  675964 590054
[2026-01-11 10:55:36] 2026-01-11 09:55:36,563 [wrapper] Test setup, not cleaning
[2026-01-11 10:55:36] 2026-01-11 09:55:36,565 [wrapper] apfmon messages muted
[2026-01-11 10:55:36] 2026-01-11 09:55:36,567 [wrapper] ==== wrapper stdout END ====
[2026-01-11 10:55:36] 2026-01-11 09:55:36,570 [wrapper] ==== wrapper stderr END ====
[2026-01-11 10:55:36]  *** Error codes and diagnostics ***
[2026-01-11 10:55:36]     "exeErrorCode": 65,
[2026-01-11 10:55:36]     "exeErrorDiag": "HITSMergeAthenaMP0 got a SIGABRT signal (exit code 134); Logfile error in log.HITSMergeAthenaMP0: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: <NONE>; Current Function: unknown\"",
[2026-01-11 10:55:36]     "pilotErrorCode": 1305,
[2026-01-11 10:55:36]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: HITSMergeAthenaMP0 got a SIGABRT signal (exit code 134); Logfile error in log.HITSMergeAthenaMP0: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unk",
[2026-01-11 10:55:36]  *** Listing of results directory ***
[2026-01-11 10:55:36] insgesamt 390580
[2026-01-11 10:55:36] -rw-r--r-- 1 boinc boinc    579449 Jan 10 14:09 pilot3.tar.gz
[2026-01-11 10:55:36] -rwx------ 1 boinc boinc     36322 Jan 10 14:11 runpilot2-wrapper.sh
[2026-01-11 10:55:36] -rw-r--r-- 1 boinc boinc      5112 Jan 10 14:11 queuedata.json
[2026-01-11 10:55:36] -rw-r--r-- 1 boinc boinc       100 Jan 11 09:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 10:55:36] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 09:43 run_atlas
[2026-01-11 10:55:36] -rw-r--r-- 1 boinc boinc       105 Jan 11 09:43 job.xml
[2026-01-11 10:55:36] -rw-r--r-- 2 boinc boinc 393209342 Jan 11 09:43 EVNT.47962006._000074.pool.root.1
[2026-01-11 10:55:36] -rw-r--r-- 2 boinc boinc    592618 Jan 11 09:43 input.tar.gz
[2026-01-11 10:55:36] -rw-r--r-- 2 boinc boinc     15847 Jan 11 09:43 start_atlas.sh
[2026-01-11 10:55:36] drwxrwx--x 2 boinc boinc      4096 Jan 11 09:43 shared
[2026-01-11 10:55:36] -rw-r--r-- 1 boinc boinc         0 Jan 11 09:43 boinc_setup_complete
[2026-01-11 10:55:36] -rw-r--r-- 1 boinc boinc      8869 Jan 11 09:43 init_data.xml
[2026-01-11 10:55:36] -rw-r--r-- 1 boinc boinc         0 Jan 11 09:43 boinc_lockfile
[2026-01-11 10:55:36] -rw-r--r-- 1 boinc boinc      2890 Jan 11 09:43 pandaJob.out
[2026-01-11 10:55:36] -rw------- 1 boinc boinc    989548 Jan 11 09:43 agis_schedconf.cvmfs.json
[2026-01-11 10:55:36] -rw------- 1 boinc boinc   1516240 Jan 11 09:43 agis_ddmendpoints.agis.ALL.json
[2026-01-11 10:55:36] drwx------ 5 boinc boinc      4096 Jan 11 09:43 pilot3
[2026-01-11 10:55:36] -rw-r--r-- 1 boinc boinc       528 Jan 11 10:19 boinc_task_state.xml
[2026-01-11 10:55:36] -rw------- 1 boinc boinc      1012 Jan 11 10:52 memory_monitor_summary.json
[2026-01-11 10:55:36] -rw------- 1 boinc boinc    742462 Jan 11 10:52 log.47962010._002208.job.log.tgz.1
[2026-01-11 10:55:36] -rw------- 1 boinc boinc      9411 Jan 11 10:54 heartbeat.json
[2026-01-11 10:55:36] -rw-r--r-- 1 boinc boinc        26 Jan 11 10:55 wrapper_checkpoint.txt
[2026-01-11 10:55:36] -rw------- 1 boinc boinc        95 Jan 11 10:55 pilot_heartbeat.json
[2026-01-11 10:55:36] -rw-r--r-- 1 boinc boinc      8192 Jan 11 10:55 boinc_mmap_file
[2026-01-11 10:55:36] -rw------- 1 boinc boinc      4831 Jan 11 10:55 pilotlog.txt
[2026-01-11 10:55:36] -rw------- 1 boinc boinc    671427 Jan 11 10:55 log.47962010._002208.job.log.1
[2026-01-11 10:55:36] -rw------- 1 boinc boinc       186 Jan 11 10:55 output.list
[2026-01-11 10:55:36] -rw-r--r-- 1 boinc boinc       620 Jan 11 10:55 runtime_log
[2026-01-11 10:55:36] -rw------- 1 boinc boinc   1433600 Jan 11 10:55 result.tar.gz
[2026-01-11 10:55:36] -rw------- 1 boinc boinc       636 Jan 11 10:55 VnINDmHvny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGmmKDmBGSOGn.diag
[2026-01-11 10:55:36] -rw-r--r-- 1 boinc boinc      8707 Jan 11 10:55 runtime_log.err
[2026-01-11 10:55:36] -rw-r--r-- 1 boinc boinc     22078 Jan 11 10:55 stderr.txt
[2026-01-11 10:55:36] No HITS result produced
[2026-01-11 10:55:36]  *** Contents of shared directory: ***
[2026-01-11 10:55:36] insgesamt 385996
[2026-01-11 10:55:36] -rw-r--r-- 2 boinc boinc 393209342 Jan 11 09:43 ATLAS.root_0
[2026-01-11 10:55:36] -rw-r--r-- 2 boinc boinc    592618 Jan 11 09:43 input.tar.gz
[2026-01-11 10:55:36] -rw-r--r-- 2 boinc boinc     15847 Jan 11 09:43 start_atlas.sh
[2026-01-11 10:55:36] -rw------- 1 boinc boinc   1433600 Jan 11 10:55 result.tar.gz
10:55:37 (586249): run_atlas exited; CPU time 8275.288626
10:55:37 (586249): called boinc_finish(0)

</stderr_txt>
]]>

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