Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:46:22 (2215022): wrapper (7.7.26015): starting
16:46:22 (2215022): wrapper: running run_atlas (--nthreads 12)
[2026-01-11 16:46:22] Arguments: --nthreads 12
[2026-01-11 16:46:22] Threads: 12
[2026-01-11 16:46:22] Checking for CVMFS
[2026-01-11 16:46:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 16:46:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 16:46:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 16:46:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 16:46:22] 2.13.3.0 36987 5951 103576 155021 1 132 35832506 46080001 922 130560 0 9634152 99.995 220948 24742 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-01-11 16:46:22] CVMFS is ok
[2026-01-11 16:46:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 16:46:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 16:46:22] Further information can be found at the LHC@home message board.
[2026-01-11 16:46:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 16:46:22] Checking for apptainer binary...
[2026-01-11 16:46:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 16:46:22] Running /usr/bin/apptainer --version
[2026-01-11 16:46:22] apptainer version 1.4.5-2.el9
[2026-01-11 16:46:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 16:46:22] minis01.farm.particle.cz
[2026-01-11 16:46:22] apptainer works
[2026-01-11 16:46:22] Set ATHENA_PROC_NUMBER=12
[2026-01-11 16:46:22] Set ATHENA_CORE_NUMBER=12
[2026-01-11 16:46:22] Starting ATLAS job with PandaID=6965383932
[2026-01-11 16:46:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 17:10:00]  *** The last 200 lines of the pilot log: ***
[2026-01-11 17:10:00] 2026-01-11 16:09:23,179 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6965383932/log.47962010._002073.job.log.tgz.1 /var/lib/boinc/slots/3/log.47962010._002073.job
[2026-01-11 17:10:00] 2026-01-11 16:09:23,197 | INFO     | adding to output.list: log.47962010._002073.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/a1/68/log.47962010._002073.job.log.tgz.
[2026-01-11 17:10:00] 2026-01-11 16:09:23,198 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 17:10:00] 2026-01-11 16:09:23,198 | INFO     | summary of transferred files:
[2026-01-11 17:10:00] 2026-01-11 16:09:23,198 | INFO     |  -- lfn=log.47962010._002073.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 17:10:00] 2026-01-11 16:09:23,198 | INFO     | stage-out finished correctly
[2026-01-11 17:10:00] 2026-01-11 16:09:23,261 | INFO     | time since job start (1372s) is within the limit (349056.0s)
[2026-01-11 17:10:00] 2026-01-11 16:09:23,269 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 17:10:00] 2026-01-11 16:09:24,158 | INFO     | job 6965383932 has state=finished
[2026-01-11 17:10:00] 2026-01-11 16:09:24,158 | INFO     | preparing for final server update for job 6965383932 in state='finished'
[2026-01-11 17:10:00] 2026-01-11 16:09:24,159 | INFO     | this job has now completed (state=finished)
[2026-01-11 17:10:00] 2026-01-11 16:09:24,159 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 17:10:00] 2026-01-11 16:09:24,159 | INFO     | log transfer has been attempted: DONE
[2026-01-11 17:10:00] 2026-01-11 16:09:24,159 | INFO     | job 6965383932 has finished - writing final server update
[2026-01-11 17:10:00] 2026-01-11 16:09:24,160 | INFO     | total number of processed events: 50 (read)
[2026-01-11 17:10:00] 2026-01-11 16:09:24,161 | INFO     | executing command: lscpu
[2026-01-11 17:10:00] 2026-01-11 16:09:24,194 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 17:10:00] 2026-01-11 16:09:24,736 | WARNING  | process 2226444 can no longer be monitored (due to stat problems) - aborting
[2026-01-11 17:10:00] 2026-01-11 16:09:24,736 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6965383932/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 17:10:00] 2026-01-11 16:09:24,737 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6965383932/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 17:10:00] 2026-01-11 16:09:24,737 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-11 17:10:00] 2026-01-11 16:09:24,738 | WARNING  | maxPSS not found in memory monitor output
[2026-01-11 17:10:00] 2026-01-11 16:09:24,738 | INFO     | payload log (log.HITSMergeAthenaMP0) within allowed size limit (2147483648 B): 172956 B
[2026-01-11 17:10:00] 2026-01-11 16:09:24,738 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4231931 B
[2026-01-11 17:10:00] 2026-01-11 16:09:24,738 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 13462 B
[2026-01-11 17:10:00] 2026-01-11 16:09:24,738 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-01-11 17:10:00] 2026-01-11 16:09:25,275 | INFO     | time since job start (1374s) is within the limit (349056.0s)
[2026-01-11 17:10:00] 2026-01-11 16:09:27,278 | INFO     | time since job start (1376s) is within the limit (349056.0s)
[2026-01-11 17:10:00] 2026-01-11 16:09:27,819 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 17:10:00] 2026-01-11 16:09:27,831 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 2755.9290625
[2026-01-11 17:10:00] 2026-01-11 16:09:27,835 | INFO     | sufficient remaining disk space (71733084160 B)
[2026-01-11 17:10:00] 2026-01-11 16:09:27,835 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-11 17:10:00] 2026-01-11 16:09:27,839 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6965383932/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 17:10:00] 2026-01-11 16:09:27,839 | INFO     | extracted standard info from prmon json
[2026-01-11 17:10:00] 2026-01-11 16:09:27,840 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 17:10:00] 2026-01-11 16:09:27,840 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 17:10:00] 2026-01-11 16:09:27,841 | INFO     | fitting pss+swap vs Time
[2026-01-11 17:10:00] 2026-01-11 16:09:27,841 | INFO     | sum of square deviations: 1262763.4375
[2026-01-11 17:10:00] 2026-01-11 16:09:27,841 | INFO     | sum of deviations: -208911833.4375
[2026-01-11 17:10:00] 2026-01-11 16:09:27,842 | INFO     | mean x: 1768147179.3125
[2026-01-11 17:10:00] 2026-01-11 16:09:27,842 | INFO     | mean y: 3175300.6875
[2026-01-11 17:10:00] 2026-01-11 16:09:27,842 | INFO     | intersect: 292525795173.8325
[2026-01-11 17:10:00] 2026-01-11 16:09:27,842 | INFO     | chi2: 0.08918984635400641
[2026-01-11 17:10:00] 2026-01-11 16:09:27,842 | INFO     | current memory leak: -165.44 B/s (using 16 data points, chi2=0.09)
[2026-01-11 17:10:00] 2026-01-11 16:09:27,843 | INFO     | could have reported an average CPU frequency of 2733 MHz (4 samples)
[2026-01-11 17:10:00] 2026-01-11 16:09:27,843 | INFO     | ..............................
[2026-01-11 17:10:00] 2026-01-11 16:09:27,843 | INFO     | . Timing measurements:
[2026-01-11 17:10:00] 2026-01-11 16:09:27,843 | INFO     | . get job = 0 s
[2026-01-11 17:10:00] 2026-01-11 16:09:27,844 | INFO     | . initial setup = 1 s
[2026-01-11 17:10:00] 2026-01-11 16:09:27,844 | INFO     | . payload setup = 5 s
[2026-01-11 17:10:00] 2026-01-11 16:09:27,844 | INFO     | . stage-in = 0 s
[2026-01-11 17:10:00] 2026-01-11 16:09:27,844 | INFO     | . payload execution = 1346 s
[2026-01-11 17:10:00] 2026-01-11 16:09:27,844 | INFO     | . stage-out = 0 s
[2026-01-11 17:10:00] 2026-01-11 16:09:27,844 | INFO     | . log creation = 0 s
[2026-01-11 17:10:00] 2026-01-11 16:09:27,844 | INFO     | ..............................
[2026-01-11 17:10:00] 2026-01-11 16:09:27,922 | INFO     | size of work directory /var/lib/boinc/slots/3/PanDA_Pilot-6965383932: 9121038 B (within 4404019200 B limit)
[2026-01-11 17:10:00] 2026-01-11 16:09:27,922 | INFO     | pfn file=/var/lib/boinc/slots/3/PanDA_Pilot-6965383932/HITS.47962010._002073.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-11 17:10:00] 2026-01-11 16:09:27,922 | INFO     | total size of present files: 0 B (workdir size: 9121038 B)
[2026-01-11 17:10:00] 2026-01-11 16:09:27,922 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/3/PanDA_Pilot-6965383932/HITS.47962010._002073.pool.root.1 since it does not exist
[2026-01-11 17:10:00] 2026-01-11 16:09:28,057 | INFO     | number of running child processes to parent process 2226444: 1
[2026-01-11 17:10:00] 2026-01-11 16:09:28,058 | INFO     | maximum number of monitored processes: 17
[2026-01-11 17:10:00] 2026-01-11 16:09:28,058 | INFO     | aborting job monitoring since job object (job id=6965383932) has expired
[2026-01-11 17:10:00] 2026-01-11 16:09:28,293 | INFO     | 
[2026-01-11 17:10:00] 2026-01-11 16:09:28,293 | INFO     | job summary report
[2026-01-11 17:10:00] 2026-01-11 16:09:28,293 | INFO     | --------------------------------------------------
[2026-01-11 17:10:00] 2026-01-11 16:09:28,293 | INFO     | PanDA job id: 6965383932
[2026-01-11 17:10:00] 2026-01-11 16:09:28,293 | INFO     | task id: 47962010
[2026-01-11 17:10:00] 2026-01-11 16:09:28,293 | INFO     | errors: (none)
[2026-01-11 17:10:00] 2026-01-11 16:09:28,293 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 17:10:00] 2026-01-11 16:09:28,293 | INFO     | pilot state: finished 
[2026-01-11 17:10:00] 2026-01-11 16:09:28,293 | INFO     | transexitcode: 0
[2026-01-11 17:10:00] 2026-01-11 16:09:28,293 | INFO     | exeerrorcode: 0
[2026-01-11 17:10:00] 2026-01-11 16:09:28,294 | INFO     | exeerrordiag: 
[2026-01-11 17:10:00] 2026-01-11 16:09:28,294 | INFO     | exitcode: 0
[2026-01-11 17:10:00] 2026-01-11 16:09:28,294 | INFO     | exitmsg: OK
[2026-01-11 17:10:00] 2026-01-11 16:09:28,294 | INFO     | cpuconsumptiontime: 12672 s
[2026-01-11 17:10:00] 2026-01-11 16:09:28,294 | INFO     | nevents: 50
[2026-01-11 17:10:00] 2026-01-11 16:09:28,294 | INFO     | neventsw: 0
[2026-01-11 17:10:00] 2026-01-11 16:09:28,294 | INFO     | pid: 2226444
[2026-01-11 17:10:00] 2026-01-11 16:09:28,294 | INFO     | pgrp: 2226444
[2026-01-11 17:10:00] 2026-01-11 16:09:28,294 | INFO     | corecount: 12
[2026-01-11 17:10:00] 2026-01-11 16:09:28,294 | INFO     | event service: False
[2026-01-11 17:10:00] 2026-01-11 16:09:28,294 | INFO     | sizes: {0: 2284398, 1: 2284597, 4: 2284859, 11: 2284887, 1355: 2310225, 1356: 2310224, 1357: 2319458, 1361: 2319648}
[2026-01-11 17:10:00] 2026-01-11 16:09:28,294 | INFO     | --------------------------------------------------
[2026-01-11 17:10:00] 2026-01-11 16:09:28,294 | INFO     | 
[2026-01-11 17:10:00] 2026-01-11 16:09:28,294 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2026-01-11 17:10:00] 2026-01-11 16:09:28,312 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,312 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,313 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,313 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,313 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,313 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,313 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,313 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,313 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,313 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,313 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,314 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,314 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,314 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,314 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,314 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,314 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,314 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 17:10:00] 2026-01-11 16:09:28,314 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,315 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 17:10:00] 2026-01-11 16:09:28,315 | INFO     | job 6965383932 has completed (purged errors)
[2026-01-11 17:10:00] 2026-01-11 16:09:28,315 | INFO     | overall cleanup function is called
[2026-01-11 17:10:00] 2026-01-11 16:09:29,336 | INFO     | --- collectZombieJob: --- 10, [2226444]
[2026-01-11 17:10:00] 2026-01-11 16:09:29,336 | INFO     | zombie collector waiting for pid 2226444
[2026-01-11 17:10:00] 2026-01-11 16:09:29,336 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 17:10:00] 2026-01-11 16:09:29,336 | INFO     | collected zombie processes
[2026-01-11 17:10:00] 2026-01-11 16:09:29,336 | INFO     | will attempt to kill all subprocesses of pid=2226444
[2026-01-11 17:10:00] 2026-01-11 16:09:29,476 | INFO     | process IDs to be killed: [2226444] (in reverse order)
[2026-01-11 17:10:00] 2026-01-11 16:09:29,530 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 17:10:00] 2026-01-11 16:09:29,530 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 17:10:00] 2026-01-11 16:09:29,535 | INFO     | did not find any defunct processes belonging to 2226444
[2026-01-11 17:10:00] 2026-01-11 16:09:29,539 | INFO     | did not find any defunct processes belonging to 2226444
[2026-01-11 17:10:00] 2026-01-11 16:09:29,540 | INFO     | ready for new job
[2026-01-11 17:10:00] 2026-01-11 16:09:29,540 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 17:10:00] 2026-01-11 16:09:29,541 | INFO     | ***************************************
[2026-01-11 17:10:00] 2026-01-11 16:09:29,541 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 17:10:00] 2026-01-11 16:09:29,541 | INFO     | ***************************************
[2026-01-11 17:10:00] 2026-01-11 16:09:29,541 | INFO     | 
[2026-01-11 17:10:00] 2026-01-11 16:09:29,543 | INFO     | architecture information:
[2026-01-11 17:10:00] 2026-01-11 16:09:29,543 | INFO     | executing command: cat /etc/os-release
[2026-01-11 17:10:00] 2026-01-11 16:09:29,556 | INFO     | cat /etc/os-release:
[2026-01-11 17:10:00] NAME="CentOS Linux"
[2026-01-11 17:10:00] VERSION="7 (Core)"
[2026-01-11 17:10:00] ID="centos"
[2026-01-11 17:10:00] ID_LIKE="rhel fedora"
[2026-01-11 17:10:00] VERSION_ID="7"
[2026-01-11 17:10:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 17:10:00] ANSI_COLOR="0;31"
[2026-01-11 17:10:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 17:10:00] HOME_URL="https://www.centos.org/"
[2026-01-11 17:10:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 17:10:00] 
[2026-01-11 17:10:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 17:10:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 17:10:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 17:10:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 17:10:00] 
[2026-01-11 17:10:00] 2026-01-11 16:09:29,557 | INFO     | ***************************************
[2026-01-11 17:10:00] 2026-01-11 16:09:30,059 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-01-11 17:10:00] 2026-01-11 16:09:30,075 | INFO     | sufficient remaining disk space (71742521344 B)
[2026-01-11 17:10:00] 2026-01-11 16:09:30,075 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 17:10:00] 2026-01-11 16:09:30,075 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 17:10:00] 2026-01-11 16:09:30,075 | INFO     | update_server=False
[2026-01-11 17:10:00] 2026-01-11 16:09:30,075 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 17:10:00] 2026-01-11 16:09:30,075 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 17:10:00] 2026-01-11 16:09:30,561 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-11 17:10:00] 2026-01-11 16:09:30,561 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-11 17:10:00] 2026-01-11 16:09:30,561 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 17:10:00] 2026-01-11 16:09:30,561 | INFO     | will abort loop
[2026-01-11 17:10:00] 2026-01-11 16:09:30,895 | INFO     | all job control threads have been joined
[2026-01-11 17:10:00] 2026-01-11 16:09:31,001 | INFO     | all data control threads have been joined
[2026-01-11 17:10:00] 2026-01-11 16:09:31,081 | INFO     | [job] retrieve thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:31,088 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:31,170 | INFO     | all payload control threads have been joined
[2026-01-11 17:10:00] 2026-01-11 16:09:31,253 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:31,280 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 17:10:00] 2026-01-11 16:09:31,566 | INFO     | [job] job monitor thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:31,591 | INFO     | [payload] validate_post thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:31,886 | INFO     | [data] copytool_in thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:31,901 | INFO     | [job] control thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:31,920 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:32,006 | INFO     | [data] control thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:32,175 | INFO     | [payload] control thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:32,267 | INFO     | [job] validate thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:32,588 | INFO     | [payload] failed_post thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:32,927 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 17:10:00] 2026-01-11 16:09:33,257 | INFO     | [monitor] cgroup control has ended
[2026-01-11 17:10:00] 2026-01-11 16:09:33,286 | INFO     | [data] copytool_out thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:33,930 | INFO     | [job] queue monitor thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:34,081 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:40,237 | INFO     | job.realtimelogging is not enabled
[2026-01-11 17:10:00] 2026-01-11 16:09:41,242 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 17:10:00] 2026-01-11 16:09:41,960 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139823116818240)>', '<ExcThread(monitor, started 139822760965888)>']
[2026-01-11 17:10:00] 2026-01-11 16:09:46,985 | INFO     | all workflow threads have been joined
[2026-01-11 17:10:00] 2026-01-11 16:09:46,985 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 17:10:00] 2026-01-11 16:09:46,986 | INFO     | traces error code: 0
[2026-01-11 17:10:00] 2026-01-11 16:09:46,986 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 17:10:00] 2026-01-11 16:10:00,530 | INFO     | PID=2218900 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 17:10:00] 2026-01-11 16:10:00,530 | INFO     | .. there are 2 such processes running
[2026-01-11 17:10:00] 2026-01-11 16:10:00,530 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 17:10:00] 2026-01-11 16:10:00,531 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 17:10:00] 2026-01-11 16:10:00,531 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 17:10:00] 2026-01-11 16:10:00,531 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 17:10:00] 2026-01-11 16:10:00,531 | INFO     | [monitor] control thread has ended
[2026-01-11 17:10:00] 2026-01-11 16:10:00,629 [wrapper] ==== pilot stdout END ====
[2026-01-11 17:10:00] 2026-01-11 16:10:00,632 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 17:10:00] 2026-01-11 16:10:00,634 [wrapper] pilotpid: 2218900
[2026-01-11 17:10:00] 2026-01-11 16:10:00,637 [wrapper] Pilot exit status: 0
[2026-01-11 17:10:00] 2026-01-11 16:10:00,647 [wrapper] pandaids: 6965383932
[2026-01-11 17:10:00] 2026-01-11 16:10:00,683 [wrapper] cleanup supervisor_pilot 2240800 2218901
[2026-01-11 17:10:00] 2026-01-11 16:10:00,686 [wrapper] Test setup, not cleaning
[2026-01-11 17:10:00] 2026-01-11 16:10:00,689 [wrapper] apfmon messages muted
[2026-01-11 17:10:00] 2026-01-11 16:10:00,691 [wrapper] ==== wrapper stdout END ====
[2026-01-11 17:10:00] 2026-01-11 16:10:00,694 [wrapper] ==== wrapper stderr END ====
[2026-01-11 17:10:00]  *** Error codes and diagnostics ***
[2026-01-11 17:10:00]     "exeErrorCode": 0,
[2026-01-11 17:10:00]     "exeErrorDiag": "",
[2026-01-11 17:10:00]     "pilotErrorCode": 0,
[2026-01-11 17:10:00]     "pilotErrorDiag": "",
[2026-01-11 17:10:00]  *** Listing of results directory ***
[2026-01-11 17:10:00] total 433600
[2026-01-11 17:10:00] -rw-r--r--. 1 boinc boinc    579449 Jan 10 14:09 pilot3.tar.gz
[2026-01-11 17:10:00] -rwx------. 1 boinc boinc     36322 Jan 10 14:11 runpilot2-wrapper.sh
[2026-01-11 17:10:00] -rw-r--r--. 1 boinc boinc      5112 Jan 10 14:11 queuedata.json
[2026-01-11 17:10:00] -rw-r--r--. 1 boinc boinc       100 Jan 11 16:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 17:10:00] -rwxr-xr-x. 1 boinc boinc      7986 Jan 11 16:46 run_atlas
[2026-01-11 17:10:00] -rw-r--r--. 1 boinc boinc       105 Jan 11 16:46 job.xml
[2026-01-11 17:10:00] -rw-r--r--. 2 boinc boinc 391830875 Jan 11 16:46 EVNT.47962006._000054.pool.root.1
[2026-01-11 17:10:00] -rw-r--r--. 1 boinc boinc      6523 Jan 11 16:46 init_data.xml
[2026-01-11 17:10:00] -rw-r--r--. 2 boinc boinc     15847 Jan 11 16:46 start_atlas.sh
[2026-01-11 17:10:00] drwxrwx--x. 2 boinc boinc      4096 Jan 11 16:46 shared
[2026-01-11 17:10:00] -rw-r--r--. 2 boinc boinc    592609 Jan 11 16:46 input.tar.gz
[2026-01-11 17:10:00] -rw-r--r--. 1 boinc boinc         0 Jan 11 16:46 boinc_lockfile
[2026-01-11 17:10:00] -rw-r--r--. 1 boinc boinc      2890 Jan 11 16:46 pandaJob.out
[2026-01-11 17:10:00] -rw-------. 1 boinc boinc    989556 Jan 11 16:46 agis_schedconf.cvmfs.json
[2026-01-11 17:10:00] -rw-------. 1 boinc boinc   1516240 Jan 11 16:46 agis_ddmendpoints.agis.ALL.json
[2026-01-11 17:10:00] drwx------. 5 boinc boinc      4096 Jan 11 16:46 pilot3
[2026-01-11 17:10:00] -rw-r--r--. 1 boinc boinc       530 Jan 11 17:05 boinc_task_state.xml
[2026-01-11 17:10:00] -rw-------. 1 boinc boinc  44631915 Jan 11 17:09 HITS.47962010._002073.pool.root.1
[2026-01-11 17:10:00] -rw-------. 1 boinc boinc      1015 Jan 11 17:09 memory_monitor_summary.json
[2026-01-11 17:10:00] -rw-------. 1 boinc boinc   1568083 Jan 11 17:09 log.47962010._002073.job.log.tgz.1
[2026-01-11 17:10:00] -rw-------. 1 boinc boinc      8564 Jan 11 17:09 heartbeat.json
[2026-01-11 17:10:00] -rw-r--r--. 1 boinc boinc        27 Jan 11 17:09 wrapper_checkpoint.txt
[2026-01-11 17:10:00] -rw-r--r--. 1 boinc boinc      8192 Jan 11 17:09 boinc_mmap_file
[2026-01-11 17:10:00] -rw-------. 1 boinc boinc       822 Jan 11 17:10 pilotlog.txt
[2026-01-11 17:10:00] -rw-------. 1 boinc boinc        95 Jan 11 17:10 pilot_heartbeat.json
[2026-01-11 17:10:00] -rw-------. 1 boinc boinc    249650 Jan 11 17:10 log.47962010._002073.job.log.1
[2026-01-11 17:10:00] -rw-------. 1 boinc boinc       353 Jan 11 17:10 output.list
[2026-01-11 17:10:00] -rw-r--r--. 1 boinc boinc       620 Jan 11 17:10 runtime_log
[2026-01-11 17:10:00] -rw-------. 1 boinc boinc   1832960 Jan 11 17:10 result.tar.gz
[2026-01-11 17:10:00] -rw-r--r--. 1 boinc boinc      8864 Jan 11 17:10 runtime_log.err
[2026-01-11 17:10:00] -rw-------. 1 boinc boinc       659 Jan 11 17:10 948MDmHvny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8lmKDmdGtBYm.diag
[2026-01-11 17:10:00] -rw-r--r--. 1 boinc boinc     22748 Jan 11 17:10 stderr.txt
[2026-01-11 17:10:00] HITS file was successfully produced:
[2026-01-11 17:10:00] -rw-------. 1 boinc boinc 44631915 Jan 11 17:09 shared/HITS.pool.root.1
[2026-01-11 17:10:00]  *** Contents of shared directory: ***
[2026-01-11 17:10:00] total 428632
[2026-01-11 17:10:00] -rw-r--r--. 2 boinc boinc 391830875 Jan 11 16:46 ATLAS.root_0
[2026-01-11 17:10:00] -rw-r--r--. 2 boinc boinc     15847 Jan 11 16:46 start_atlas.sh
[2026-01-11 17:10:00] -rw-r--r--. 2 boinc boinc    592609 Jan 11 16:46 input.tar.gz
[2026-01-11 17:10:00] -rw-------. 1 boinc boinc  44631915 Jan 11 17:09 HITS.pool.root.1
[2026-01-11 17:10:00] -rw-------. 1 boinc boinc   1832960 Jan 11 17:10 result.tar.gz
17:10:01 (2215022): run_atlas exited; CPU time 12607.024143
17:10:01 (2215022): called boinc_finish(0)

</stderr_txt>
]]>

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