Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:54:04 (3360659): wrapper (7.7.26015): starting
08:54:04 (3360659): wrapper: running run_atlas (--nthreads 9)
[2026-01-10 08:54:04] Arguments: --nthreads 9
[2026-01-10 08:54:04] Threads: 9
[2026-01-10 08:54:04] Checking for CVMFS
[2026-01-10 08:54:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:54:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:54:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:54:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:54:04] 2.13.3.0 8635 24404 156408 154981 3 168 34175395 40960001 17593 16776704 0 37407461 99.764 22003025 38910 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 08:54:04] CVMFS is ok
[2026-01-10 08:54:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:54:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:54:04] Further information can be found at the LHC@home message board.
[2026-01-10 08:54:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:54:04] Checking for apptainer binary...
[2026-01-10 08:54:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:54:04] Running /usr/bin/apptainer --version
[2026-01-10 08:54:04] apptainer version 1.4.5-2.el9
[2026-01-10 08:54:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:54:05] c-212-8.aglt2.org
[2026-01-10 08:54:05] apptainer works
[2026-01-10 08:54:05] Set ATHENA_PROC_NUMBER=9
[2026-01-10 08:54:05] Set ATHENA_CORE_NUMBER=9
[2026-01-10 08:54:05] Starting ATLAS job with PandaID=6965384275
[2026-01-10 08:54:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 10:19:00]  *** The last 200 lines of the pilot log: ***
[2026-01-10 10:19:00] 2026-01-10 15:18:05,762 | INFO     | stage-out finished correctly
[2026-01-10 10:19:00] 2026-01-10 15:18:06,476 | WARNING  | process 3379673 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 10:19:00] 2026-01-10 15:18:06,476 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6965384275/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:19:00] 2026-01-10 15:18:07,180 | INFO     | PID=3365237 has CPU usage=10.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-10 10:19:00] 2026-01-10 15:18:07,181 | INFO     | .. there are 14 such processes running
[2026-01-10 10:19:00] 2026-01-10 15:18:07,548 | INFO     | number of running child processes to parent process 3379673: 1
[2026-01-10 10:19:00] 2026-01-10 15:18:07,548 | INFO     | maximum number of monitored processes: 14
[2026-01-10 10:19:00] 2026-01-10 15:18:08,183 | INFO     | time since job start (5009s) is within the limit (349056.0s)
[2026-01-10 10:19:00] 2026-01-10 15:18:09,339 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 10:19:00] 2026-01-10 15:18:09,759 | INFO     | job 6965384275 has state=finished
[2026-01-10 10:19:00] 2026-01-10 15:18:09,759 | INFO     | preparing for final server update for job 6965384275 in state='finished'
[2026-01-10 10:19:00] 2026-01-10 15:18:09,760 | INFO     | this job has now completed (state=finished)
[2026-01-10 10:19:00] 2026-01-10 15:18:09,760 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 10:19:00] 2026-01-10 15:18:09,760 | INFO     | log transfer has been attempted: DONE
[2026-01-10 10:19:00] 2026-01-10 15:18:09,760 | INFO     | job 6965384275 has finished - writing final server update
[2026-01-10 10:19:00] 2026-01-10 15:18:09,760 | INFO     | total number of processed events: 50 (read)
[2026-01-10 10:19:00] 2026-01-10 15:18:09,792 | INFO     | executing command: lscpu
[2026-01-10 10:19:00] 2026-01-10 15:18:10,058 | INFO     | monitor loop #361: job 0:6965384275 is in state 'finished'
[2026-01-10 10:19:00] 2026-01-10 15:18:10,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:19:00] 2026-01-10 15:18:10,194 | INFO     | time since job start (5011s) is within the limit (349056.0s)
[2026-01-10 10:19:00] 2026-01-10 15:18:10,205 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 10:19:00] 2026-01-10 15:18:12,201 | INFO     | time since job start (5013s) is within the limit (349056.0s)
[2026-01-10 10:19:00] 2026-01-10 15:18:12,201 | INFO     | 5016s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-10 10:19:00] 2026-01-10 15:18:12,563 | INFO     | monitor loop #362: job 0:6965384275 is in state 'finished'
[2026-01-10 10:19:00] 2026-01-10 15:18:12,565 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:19:00] 2026-01-10 15:18:14,208 | INFO     | time since job start (5015s) is within the limit (349056.0s)
[2026-01-10 10:19:00] 2026-01-10 15:18:15,070 | INFO     | monitor loop #363: job 0:6965384275 is in state 'finished'
[2026-01-10 10:19:00] 2026-01-10 15:18:15,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:19:00] 2026-01-10 15:18:16,215 | INFO     | time since job start (5017s) is within the limit (349056.0s)
[2026-01-10 10:19:00] 2026-01-10 15:18:17,575 | INFO     | monitor loop #364: job 0:6965384275 is in state 'finished'
[2026-01-10 10:19:00] 2026-01-10 15:18:17,575 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:19:00] 2026-01-10 15:18:18,230 | INFO     | time since job start (5019s) is within the limit (349056.0s)
[2026-01-10 10:19:00] 2026-01-10 15:18:20,080 | INFO     | monitor loop #365: job 0:6965384275 is in state 'finished'
[2026-01-10 10:19:00] 2026-01-10 15:18:20,080 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:19:00] 2026-01-10 15:18:20,250 | INFO     | time since job start (5021s) is within the limit (349056.0s)
[2026-01-10 10:19:00] 2026-01-10 15:18:22,260 | INFO     | time since job start (5023s) is within the limit (349056.0s)
[2026-01-10 10:19:00] 2026-01-10 15:18:22,585 | INFO     | monitor loop #366: job 0:6965384275 is in state 'finished'
[2026-01-10 10:19:00] 2026-01-10 15:18:22,585 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:19:00] 2026-01-10 15:18:24,290 | INFO     | time since job start (5025s) is within the limit (349056.0s)
[2026-01-10 10:19:00] 2026-01-10 15:18:24,868 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 10:19:00] 2026-01-10 15:18:24,888 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3255.6026770833328
[2026-01-10 10:19:00] 2026-01-10 15:18:25,015 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6965384275/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:19:00] 2026-01-10 15:18:25,016 | INFO     | extracted standard info from prmon json
[2026-01-10 10:19:00] 2026-01-10 15:18:25,016 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 10:19:00] 2026-01-10 15:18:25,016 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 10:19:00] 2026-01-10 15:18:25,018 | INFO     | fitting pss+swap vs Time
[2026-01-10 10:19:00] 2026-01-10 15:18:25,019 | INFO     | sum of square deviations: 125668710.5
[2026-01-10 10:19:00] 2026-01-10 15:18:25,019 | INFO     | sum of deviations: 18502459991.0
[2026-01-10 10:19:00] 2026-01-10 15:18:25,019 | INFO     | mean x: 1768055884.5
[2026-01-10 10:19:00] 2026-01-10 15:18:25,019 | INFO     | mean y: 2509860.2162162163
[2026-01-10 10:19:00] 2026-01-10 15:18:25,019 | INFO     | intersect: -260311956124.64297
[2026-01-10 10:19:00] 2026-01-10 15:18:25,019 | INFO     | chi2: 1.5479280733065948
[2026-01-10 10:19:00] 2026-01-10 15:18:25,038 | INFO     | current memory leak: 147.23 B/s (using 74 data points, chi2=1.55)
[2026-01-10 10:19:00] 2026-01-10 15:18:25,038 | INFO     | could have reported an average CPU frequency of 3197 MHz (6 samples)
[2026-01-10 10:19:00] 2026-01-10 15:18:25,038 | INFO     | ..............................
[2026-01-10 10:19:00] 2026-01-10 15:18:25,038 | INFO     | . Timing measurements:
[2026-01-10 10:19:00] 2026-01-10 15:18:25,038 | INFO     | . get job = 0 s
[2026-01-10 10:19:00] 2026-01-10 15:18:25,038 | INFO     | . initial setup = 2 s
[2026-01-10 10:19:00] 2026-01-10 15:18:25,038 | INFO     | . payload setup = 21 s
[2026-01-10 10:19:00] 2026-01-10 15:18:25,038 | INFO     | . stage-in = 0 s
[2026-01-10 10:19:00] 2026-01-10 15:18:25,038 | INFO     | . payload execution = 4941 s
[2026-01-10 10:19:00] 2026-01-10 15:18:25,038 | INFO     | . stage-out = 2 s
[2026-01-10 10:19:00] 2026-01-10 15:18:25,065 | INFO     | . log creation = 0 s
[2026-01-10 10:19:00] 2026-01-10 15:18:25,065 | INFO     | ..............................
[2026-01-10 10:19:00] 2026-01-10 15:18:25,375 | INFO     | 
[2026-01-10 10:19:00] 2026-01-10 15:18:25,375 | INFO     | job summary report
[2026-01-10 10:19:00] 2026-01-10 15:18:25,375 | INFO     | --------------------------------------------------
[2026-01-10 10:19:00] 2026-01-10 15:18:25,375 | INFO     | PanDA job id: 6965384275
[2026-01-10 10:19:00] 2026-01-10 15:18:25,375 | INFO     | task id: 47962010
[2026-01-10 10:19:00] 2026-01-10 15:18:25,375 | INFO     | errors: (none)
[2026-01-10 10:19:00] 2026-01-10 15:18:25,375 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 10:19:00] 2026-01-10 15:18:25,376 | INFO     | pilot state: finished 
[2026-01-10 10:19:00] 2026-01-10 15:18:25,376 | INFO     | transexitcode: 0
[2026-01-10 10:19:00] 2026-01-10 15:18:25,376 | INFO     | exeerrorcode: 0
[2026-01-10 10:19:00] 2026-01-10 15:18:25,376 | INFO     | exeerrordiag: 
[2026-01-10 10:19:00] 2026-01-10 15:18:25,376 | INFO     | exitcode: 0
[2026-01-10 10:19:00] 2026-01-10 15:18:25,376 | INFO     | exitmsg: OK
[2026-01-10 10:19:00] 2026-01-10 15:18:25,376 | INFO     | cpuconsumptiontime: 10626 s
[2026-01-10 10:19:00] 2026-01-10 15:18:25,378 | INFO     | nevents: 50
[2026-01-10 10:19:00] 2026-01-10 15:18:25,378 | INFO     | neventsw: 0
[2026-01-10 10:19:00] 2026-01-10 15:18:25,378 | INFO     | pid: 3379673
[2026-01-10 10:19:00] 2026-01-10 15:18:25,378 | INFO     | pgrp: 3379673
[2026-01-10 10:19:00] 2026-01-10 15:18:25,378 | INFO     | corecount: 9
[2026-01-10 10:19:00] 2026-01-10 15:18:25,378 | INFO     | event service: False
[2026-01-10 10:19:00] 2026-01-10 15:18:25,378 | INFO     | sizes: {0: 2283741, 1: 2284597, 2: 2284597, 12: 2284625, 18: 2284915, 23: 2284943, 4967: 2312094, 4969: 2321088, 4973: 2321144, 4989: 2321390}
[2026-01-10 10:19:00] 2026-01-10 15:18:25,378 | INFO     | --------------------------------------------------
[2026-01-10 10:19:00] 2026-01-10 15:18:25,379 | INFO     | 
[2026-01-10 10:19:00] 2026-01-10 15:18:25,379 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-10 10:19:00] 2026-01-10 15:18:25,402 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,402 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,402 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,402 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,402 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,402 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,407 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,407 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,407 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,407 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,407 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,407 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,407 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,407 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,407 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,407 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,407 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,407 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 10:19:00] 2026-01-10 15:18:25,407 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,408 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 10:19:00] 2026-01-10 15:18:25,408 | INFO     | job 6965384275 has completed (purged errors)
[2026-01-10 10:19:00] 2026-01-10 15:18:25,408 | INFO     | overall cleanup function is called
[2026-01-10 10:19:00] 2026-01-10 15:18:26,461 | INFO     | --- collectZombieJob: --- 10, [3379673]
[2026-01-10 10:19:00] 2026-01-10 15:18:26,461 | INFO     | zombie collector waiting for pid 3379673
[2026-01-10 10:19:00] 2026-01-10 15:18:26,461 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 10:19:00] 2026-01-10 15:18:26,461 | INFO     | collected zombie processes
[2026-01-10 10:19:00] 2026-01-10 15:18:26,461 | INFO     | will attempt to kill all subprocesses of pid=3379673
[2026-01-10 10:19:00] 2026-01-10 15:18:27,739 | INFO     | process IDs to be killed: [3379673] (in reverse order)
[2026-01-10 10:19:00] 2026-01-10 15:18:28,091 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 10:19:00] 2026-01-10 15:18:28,091 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 10:19:00] 2026-01-10 15:18:28,158 | INFO     | did not find any defunct processes belonging to 3379673
[2026-01-10 10:19:00] 2026-01-10 15:18:28,239 | INFO     | did not find any defunct processes belonging to 3379673
[2026-01-10 10:19:00] 2026-01-10 15:18:28,240 | INFO     | ready for new job
[2026-01-10 10:19:00] 2026-01-10 15:18:28,240 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 10:19:00] 2026-01-10 15:18:28,271 | INFO     | ***************************************
[2026-01-10 10:19:00] 2026-01-10 15:18:28,271 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 10:19:00] 2026-01-10 15:18:28,271 | INFO     | ***************************************
[2026-01-10 10:19:00] 2026-01-10 15:18:28,271 | INFO     | 
[2026-01-10 10:19:00] 2026-01-10 15:18:28,293 | INFO     | architecture information:
[2026-01-10 10:19:00] 2026-01-10 15:18:28,343 | INFO     | executing command: cat /etc/os-release
[2026-01-10 10:19:00] 2026-01-10 15:18:28,415 | INFO     | cat /etc/os-release:
[2026-01-10 10:19:00] NAME="CentOS Linux"
[2026-01-10 10:19:00] VERSION="7 (Core)"
[2026-01-10 10:19:00] ID="centos"
[2026-01-10 10:19:00] ID_LIKE="rhel fedora"
[2026-01-10 10:19:00] VERSION_ID="7"
[2026-01-10 10:19:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 10:19:00] ANSI_COLOR="0;31"
[2026-01-10 10:19:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 10:19:00] HOME_URL="https://www.centos.org/"
[2026-01-10 10:19:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 10:19:00] 
[2026-01-10 10:19:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 10:19:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 10:19:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 10:19:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 10:19:00] 
[2026-01-10 10:19:00] 2026-01-10 15:18:28,416 | INFO     | ***************************************
[2026-01-10 10:19:00] 2026-01-10 15:18:28,944 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-10 10:19:00] 2026-01-10 15:18:29,055 | INFO     | sufficient remaining disk space (128409665536 B)
[2026-01-10 10:19:00] 2026-01-10 15:18:29,055 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 10:19:00] 2026-01-10 15:18:29,056 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 10:19:00] 2026-01-10 15:18:29,056 | INFO     | update_server=False
[2026-01-10 10:19:00] 2026-01-10 15:18:29,056 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 10:19:00] 2026-01-10 15:18:29,056 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:19:00] 2026-01-10 15:18:29,056 | INFO     | aborting loop
[2026-01-10 10:19:00] 2026-01-10 15:18:29,104 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 10:19:00] 2026-01-10 15:18:29,167 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 10:19:00] 2026-01-10 15:18:29,179 | INFO     | all payload control threads have been joined
[2026-01-10 10:19:00] 2026-01-10 15:18:29,711 | INFO     | all data control threads have been joined
[2026-01-10 10:19:00] 2026-01-10 15:18:30,062 | INFO     | [job] retrieve thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:30,065 | INFO     | [job] job monitor thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:30,188 | INFO     | [payload] control thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:30,385 | INFO     | [job] validate thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:30,391 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:19:00] 2026-01-10 15:18:30,404 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:30,472 | INFO     | all job control threads have been joined
[2026-01-10 10:19:00] 2026-01-10 15:18:30,537 | INFO     | [payload] validate_post thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:30,717 | INFO     | [data] control thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:30,893 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:31,047 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:31,112 | INFO     | [data] copytool_out thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:31,137 | INFO     | [data] copytool_in thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:31,144 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:31,234 | INFO     | [payload] failed_post thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:31,397 | INFO     | [job] queue monitor thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:31,478 | INFO     | [job] control thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:33,176 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 10:19:00] 2026-01-10 15:18:46,980 | INFO     | [monitor] cgroup control has ended
[2026-01-10 10:19:00] 2026-01-10 15:18:49,038 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139665582729024)>', '<ExcThread(monitor, started 139665300489984)>']
[2026-01-10 10:19:00] 2026-01-10 15:18:54,064 | INFO     | all workflow threads have been joined
[2026-01-10 10:19:00] 2026-01-10 15:18:54,064 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 10:19:00] 2026-01-10 15:18:54,064 | INFO     | traces error code: 0
[2026-01-10 10:19:00] 2026-01-10 15:18:54,064 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 10:19:00] 2026-01-10 15:18:58,309 | INFO     | PID=3365237 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 10:19:00] 2026-01-10 15:18:58,309 | INFO     | .. there are 14 such processes running
[2026-01-10 10:19:00] 2026-01-10 15:18:58,309 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 10:19:00] 2026-01-10 15:18:58,310 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 10:19:00] 2026-01-10 15:18:58,310 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 10:19:00] 2026-01-10 15:18:58,310 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 10:19:00] 2026-01-10 15:18:58,310 | CRITICAL | thread 'MainThread' is not alive
[2026-01-10 10:19:00] 2026-01-10 15:18:58,310 | INFO     | [monitor] control thread has ended
[2026-01-10 10:19:00] 2026-01-10 15:18:58,859 [wrapper] ==== pilot stdout END ====
[2026-01-10 10:19:00] 2026-01-10 15:18:58,883 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 10:19:00] 2026-01-10 15:18:58,913 [wrapper] pilotpid: 3365237
[2026-01-10 10:19:00] 2026-01-10 15:18:58,938 [wrapper] Pilot exit status: 0
[2026-01-10 10:19:00] 2026-01-10 15:18:59,131 [wrapper] pandaids: 6965384275
[2026-01-10 10:19:00] 2026-01-10 15:18:59,572 [wrapper] cleanup supervisor_pilot 3523904 3365238
[2026-01-10 10:19:00] 2026-01-10 15:18:59,581 [wrapper] Test setup, not cleaning
[2026-01-10 10:19:00] 2026-01-10 15:18:59,599 [wrapper] apfmon messages muted
[2026-01-10 10:19:00] 2026-01-10 15:18:59,618 [wrapper] ==== wrapper stdout END ====
[2026-01-10 10:19:00] 2026-01-10 15:18:59,646 [wrapper] ==== wrapper stderr END ====
[2026-01-10 10:19:00]  *** Error codes and diagnostics ***
[2026-01-10 10:19:00]     "exeErrorCode": 0,
[2026-01-10 10:19:00]     "exeErrorDiag": "",
[2026-01-10 10:19:00]     "pilotErrorCode": 0,
[2026-01-10 10:19:00]     "pilotErrorDiag": "",
[2026-01-10 10:19:00]  *** Listing of results directory ***
[2026-01-10 10:19:00] total 428212
[2026-01-10 10:19:00] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:13 queuedata.json
[2026-01-10 10:19:00] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 10:19:00] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 10:19:00] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 10:19:00] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:54 run_atlas
[2026-01-10 10:19:00] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:54 job.xml
[2026-01-10 10:19:00] -rw-r--r--. 2 boincer umatlas 391552305 Jan 10 08:54 EVNT.47962006._000101.pool.root.1
[2026-01-10 10:19:00] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:54 start_atlas.sh
[2026-01-10 10:19:00] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:54 shared
[2026-01-10 10:19:00] -rw-r--r--. 2 boincer umatlas    592617 Jan 10 08:54 input.tar.gz
[2026-01-10 10:19:00] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:54 boinc_lockfile
[2026-01-10 10:19:00] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 08:54 pandaJob.out
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas        57 Jan 10 08:54 setup.sh.local
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas    989556 Jan 10 08:54 agis_schedconf.cvmfs.json
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas   1516240 Jan 10 08:54 agis_ddmendpoints.agis.ALL.json
[2026-01-10 10:19:00] drwx------. 5 boincer umatlas      4096 Jan 10 08:54 pilot3
[2026-01-10 10:19:00] -rw-r--r--. 1 boincer umatlas      6953 Jan 10 10:09 init_data.xml
[2026-01-10 10:19:00] -rw-r--r--. 1 boincer umatlas       529 Jan 10 10:10 boinc_task_state.xml
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas  38950236 Jan 10 10:17 HITS.47962010._002416.pool.root.1
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas      1031 Jan 10 10:17 memory_monitor_summary.json
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas   1304886 Jan 10 10:18 log.47962010._002416.job.log.tgz.1
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas        95 Jan 10 10:18 pilot_heartbeat.json
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas      8540 Jan 10 10:18 heartbeat.json
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas       893 Jan 10 10:18 pilotlog.txt
[2026-01-10 10:19:00] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 10:18 boinc_mmap_file
[2026-01-10 10:19:00] -rw-r--r--. 1 boincer umatlas        27 Jan 10 10:18 wrapper_checkpoint.txt
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas    730033 Jan 10 10:18 log.47962010._002416.job.log.1
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas       353 Jan 10 10:19 output.list
[2026-01-10 10:19:00] -rw-r--r--. 1 boincer umatlas       620 Jan 10 10:19 runtime_log
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas   2058240 Jan 10 10:19 result.tar.gz
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas       652 Jan 10 10:19 xX2KDmSyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCZhKDmeFC2mm.diag
[2026-01-10 10:19:00] -rw-r--r--. 1 boincer umatlas      9337 Jan 10 10:19 runtime_log.err
[2026-01-10 10:19:00] -rw-r--r--. 1 boincer umatlas     22373 Jan 10 10:19 stderr.txt
[2026-01-10 10:19:00] HITS file was successfully produced:
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas 38950236 Jan 10 10:17 shared/HITS.pool.root.1
[2026-01-10 10:19:00]  *** Contents of shared directory: ***
[2026-01-10 10:19:00] total 423024
[2026-01-10 10:19:00] -rw-r--r--. 2 boincer umatlas 391552305 Jan 10 08:54 ATLAS.root_0
[2026-01-10 10:19:00] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:54 start_atlas.sh
[2026-01-10 10:19:00] -rw-r--r--. 2 boincer umatlas    592617 Jan 10 08:54 input.tar.gz
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas  38950236 Jan 10 10:17 HITS.pool.root.1
[2026-01-10 10:19:00] -rw-------. 1 boincer umatlas   2058240 Jan 10 10:19 result.tar.gz
10:19:02 (3360659): run_atlas exited; CPU time 10625.803846
10:19:02 (3360659): called boinc_finish(0)

</stderr_txt>
]]>

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