Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-01-11 05:40:32 (5784): vboxwrapper version 26210
2026-01-11 05:40:32 (5784): BOINC client version: 8.2.8
2026-01-11 05:40:32 (5784): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2026-01-11 05:40:32 (5784): Successfully copied 'init_data.xml' to the shared directory.
2026-01-11 05:40:33 (5784): Create VM. (boinc_e596073ad9cd904f, slot#3)
2026-01-11 05:40:33 (5784): Setting Memory Size for VM. (4700MB)
2026-01-11 05:40:33 (5784): Setting CPU Count for VM. (7)
2026-01-11 05:40:34 (5784): Setting Chipset Options for VM.
2026-01-11 05:40:34 (5784): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-01-11 05:40:34 (5784): Setting Boot Options for VM.
2026-01-11 05:40:35 (5784): Setting Network Configuration for NAT. (Driver: virtio)
2026-01-11 05:40:35 (5784): Enabling VM Network Access.
2026-01-11 05:40:35 (5784): Disabling USB Support for VM.
2026-01-11 05:40:35 (5784): Disabling COM Port Support for VM.
2026-01-11 05:40:36 (5784): Disabling LPT Port Support for VM.
2026-01-11 05:40:36 (5784): Disabling Audio Support for VM.
2026-01-11 05:40:36 (5784): Disabling Clipboard Support for VM.
2026-01-11 05:40:36 (5784): Disabling Drag and Drop Support for VM.
2026-01-11 05:40:37 (5784): Adding storage controller(s) to VM.
2026-01-11 05:40:37 (5784): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-01-11 05:40:37 (5784): Adding VirtualBox Guest Additions to VM.
2026-01-11 05:40:38 (5784): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-01-11 05:40:38 (5784): forwarding host port 51475 to guest port 80
2026-01-11 05:40:38 (5784): Enabling remote desktop for VM.
2026-01-11 05:40:38 (5784): Required extension pack not installed, remote desktop not enabled.
2026-01-11 05:40:38 (5784): Enabling shared directory for VM.
2026-01-11 05:40:39 (5784): Starting VM using VBoxManage interface. (boinc_e596073ad9cd904f, slot#3)
2026-01-11 05:40:43 (5784): Successfully started VM. (PID = '5464')
2026-01-11 05:40:43 (5784): Reporting VM Process ID to BOINC.
2026-01-11 05:40:43 (5784): Guest Log: BIOS: VirtualBox 7.2.4
2026-01-11 05:40:43 (5784): Guest Log: CPUID EDX: 0x178bfbff
2026-01-11 05:40:43 (5784): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-01-11 05:40:43 (5784): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-01-11 05:40:43 (5784): VM state change detected. (old = 'poweredoff', new = 'running')
2026-01-11 05:40:43 (5784): Detected: Web Application Enabled (http://localhost:51475)
2026-01-11 05:40:43 (5784): Preference change detected
2026-01-11 05:40:43 (5784): Setting CPU throttle for VM. (100%)
2026-01-11 05:40:43 (5784): Setting checkpoint interval to 3300 seconds. (Higher value of (Preference: 3300 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-11 05:40:45 (5784): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-01-11 05:40:45 (5784): Guest Log: BIOS: Booting from Hard Disk...
2026-01-11 05:40:48 (5784): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-01-11 05:40:48 (5784): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-01-11 05:40:48 (5784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-01-11 05:40:53 (5784): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-01-11 05:40:53 (5784): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-01-11 05:40:56 (5784): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-01-11 05:40:56 (5784): Guest Log: 00:00:00.000150 main     Log opened 2026-01-11T05:40:54.784507000Z
2026-01-11 05:40:56 (5784): Guest Log: 00:00:00.000225 main     OS Product: Linux
2026-01-11 05:40:56 (5784): Guest Log: 00:00:00.000252 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-01-11 05:40:56 (5784): Guest Log: 00:00:00.000279 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-01-11 05:40:56 (5784): Guest Log: 00:00:00.000303 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-01-11 05:40:56 (5784): Guest Log: 00:00:00.000303 main     Process ID: 1357
2026-01-11 05:40:56 (5784): Guest Log: 00:00:00.000304 main     Package type: LINUX_64BITS_GENERIC
2026-01-11 05:40:56 (5784): Guest Log: 00:00:00.000866 main     5.2.32 r132073 started. Verbose level = 0
2026-01-11 05:40:57 (5784): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-01-11 05:40:57 (5784): Guest Log: [INFO] Mounting shared directory
2026-01-11 05:40:57 (5784): Guest Log: [INFO] Checking for init_data.xml
2026-01-11 05:41:02 (5784): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-01-11 05:41:02 (5784): Guest Log: [INFO] Detected branch: prod
2026-01-11 05:41:02 (5784): Guest Log: This is the prod version of the ATLAS job wrapper
2026-01-11 05:41:02 (5784): Guest Log: Copying input files
2026-01-11 05:41:04 (5784): Guest Log: Copied input files into RunAtlas.
2026-01-11 05:41:04 (5784): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-01-11 05:41:04 (5784): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-01-11 05:41:04 (5784): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-01-11 05:41:04 (5784): Guest Log: Further information can be found at the LHC@home message board.
2026-01-11 05:41:06 (5784): Guest Log: 00:00:10.026406 timesync vgsvcTimeSyncWorker: Radical guest time change: -32 388 359 625 000ns (GuestNow=1 768 077 666 426 552 000 ns GuestLast=1 768 110 054 786 177 000 ns fSetTimeLastLoop=true )
2026-01-11 05:41:13 (5784): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-01-11 05:41:13 (5784): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-01-11 05:41:13 (5784): Guest Log: 2.6.3.0 1634 0 32160 154991 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-01-11 05:41:13 (5784): Guest Log: copied the webapp to /var/www
2026-01-11 05:41:13 (5784): Guest Log: ATHENA_PROC_NUMBER=7
2026-01-11 05:41:13 (5784): Guest Log: ATHENA_CORE_NUMBER=7
2026-01-11 05:41:13 (5784): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-01-11 05:41:13 (5784): Guest Log:  *** Starting ATLAS job. (PandaID=6965384204 taskID=47962010) ***
2026-01-11 05:51:05 (5784): Guest Log:  *** Job finished ***
2026-01-11 05:51:05 (5784): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:50:42,275 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:50:46,328 | INFO     | [data] queue_monitor thread has finished
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:50:57,630 | INFO     | [monitor] cgroup control has ended
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:50:59,278 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140397752911680)>', '<ExcThread(monitor, started 140397170910976)>']
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:50:59,421 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:50:59,421 | INFO     | [monitor] control thread has ended
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:51:04,354 | INFO     | all workflow threads have been joined
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:51:04,354 | INFO     | end of generic workflow (traces error code: 0)
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:51:04,354 | INFO     | traces error code: 0
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:51:04,354 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:51:04,406 [wrapper] ==== pilot stdout END ====
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:51:04,410 [wrapper] ==== wrapper stdout RESUME ====
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:51:04,413 [wrapper] pilotpid: 6062
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:51:04,417 [wrapper] Pilot exit status: 0
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:51:04,427 [wrapper] pandaids: 6965384204
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:51:04,451 [wrapper] cleanup supervisor_pilot  6068 6063
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:51:04,455 [wrapper] Test setup, not cleaning
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:51:04,458 [wrapper] apfmon messages muted
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:51:04,462 [wrapper] ==== wrapper stdout END ====
2026-01-11 05:51:05 (5784): Guest Log: 2026-01-10 20:51:04,466 [wrapper] ==== wrapper stderr END ====
2026-01-11 05:51:05 (5784): Guest Log:  *** Error codes and diagnostics ***
2026-01-11 05:51:05 (5784): Guest Log:     "exeErrorCode": 65,
2026-01-11 05:51:05 (5784): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
2026-01-11 05:51:05 (5784): Guest Log:     "pilotErrorCode": 1305,
2026-01-11 05:51:05 (5784): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm",
2026-01-11 05:51:05 (5784): Guest Log:  *** Listing of results directory ***
2026-01-11 05:51:05 (5784): Guest Log: total 4176
2026-01-11 05:51:05 (5784): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jan 10 13:13 queuedata.json
2026-01-11 05:51:05 (5784): Guest Log: -rw-r--r--. 1 atlas atlas  579449 Jan 10 13:14 pilot3.tar.gz
2026-01-11 05:51:05 (5784): Guest Log: -rwx------. 1 atlas atlas   36322 Jan 10 13:14 runpilot2-wrapper.sh
2026-01-11 05:51:05 (5784): Guest Log: -rwxr-xr-x. 1 atlas atlas    8961 Jan 10 20:41 init_data.xml
2026-01-11 05:51:05 (5784): Guest Log: -rwxr-xr-x. 1 atlas atlas  592618 Jan 10 20:41 input.tar.gz
2026-01-11 05:51:05 (5784): Guest Log: -rwxr-xr-x. 1 atlas atlas   15847 Jan 10 20:41 start_atlas.sh
2026-01-11 05:51:05 (5784): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jan 10 20:41 EVNT.47962006._000093.pool.root.1 -> /data/./ATLAS.root_0
2026-01-11 05:51:05 (5784): Guest Log: -rw-r--r--. 1 atlas atlas    2889 Jan 10 20:41 pandaJob.out
2026-01-11 05:51:05 (5784): Guest Log: -rw-------. 1 atlas atlas  989548 Jan 10 20:41 agis_schedconf.cvmfs.json
2026-01-11 05:51:05 (5784): Guest Log: -rw-------. 1 atlas atlas 1516240 Jan 10 20:41 agis_ddmendpoints.agis.ALL.json
2026-01-11 05:51:05 (5784): Guest Log: drwx------. 5 atlas atlas    4096 Jan 10 20:41 pilot3
2026-01-11 05:51:05 (5784): Guest Log: -rw-------. 1 atlas atlas    1017 Jan 10 20:48 memory_monitor_summary.json
2026-01-11 05:51:05 (5784): Guest Log: -rw-------. 1 atlas atlas   84155 Jan 10 20:48 log.47962010._002345.job.log.tgz.1
2026-01-11 05:51:05 (5784): Guest Log: -rw-------. 1 atlas atlas      95 Jan 10 20:49 pilot_heartbeat.json
2026-01-11 05:51:05 (5784): Guest Log: -rw-------. 1 atlas atlas    9222 Jan 10 20:50 heartbeat.json
2026-01-11 05:51:05 (5784): Guest Log: -rw-------. 1 atlas atlas    4612 Jan 10 20:51 pilotlog.txt
2026-01-11 05:51:05 (5784): Guest Log: -rw-------. 1 atlas atlas  129265 Jan 10 20:51 log.47962010._002345.job.log.1
2026-01-11 05:51:05 (5784): Guest Log: -rw-------. 1 atlas atlas     186 Jan 10 20:51 output.list
2026-01-11 05:51:05 (5784): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jan 10 20:51 runtime_log
2026-01-11 05:51:05 (5784): Guest Log: -rw-------. 1 atlas atlas  235520 Jan 10 20:51 result.tar.gz
2026-01-11 05:51:05 (5784): Guest Log: -rw-r--r--. 1 atlas atlas    8590 Jan 10 20:51 runtime_log.err
2026-01-11 05:51:05 (5784): Guest Log: -rw-------. 1 atlas atlas     641 Jan 10 20:51 5Q1NDmPyny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlomKDmvex3Cn.diag
2026-01-11 05:51:05 (5784): Guest Log: Looking for outputfile HITS.47962010._002345.pool.root.1
2026-01-11 05:51:05 (5784): Guest Log: No HITS file was produced
2026-01-11 05:51:05 (5784): Guest Log: Successfully finished the ATLAS job!
2026-01-11 05:51:05 (5784): Guest Log: Copying the results back to the shared directory!
2026-01-11 05:51:05 (5784): Guest Log:  *** Contents of shared directory: ***
2026-01-11 05:51:05 (5784): Guest Log: total 384104
2026-01-11 05:51:05 (5784): Guest Log: -rwxrwxrwx. 1 root root 392461642 Jan 10 20:40 ATLAS.root_0
2026-01-11 05:51:05 (5784): Guest Log: -rwxrwxrwx. 1 root root      8961 Jan 10 20:40 init_data.xml
2026-01-11 05:51:05 (5784): Guest Log: -rwxrwxrwx. 1 root root    592618 Jan 10 13:50 input.tar.gz
2026-01-11 05:51:05 (5784): Guest Log: -rwxrwxrwx. 1 root root    235520 Jan 10 20:51 result.tar.gz
2026-01-11 05:51:05 (5784): Guest Log: -rwxrwxrwx. 1 root root     15847 Jan 10 13:50 start_atlas.sh
2026-01-11 05:51:05 (5784): Guest Log:  *** Success! Shutting down the machine. ***
2026-01-11 05:51:05 (5784): VM Completion File Detected.
2026-01-11 05:51:05 (5784): Powering off VM.
2026-01-11 05:51:06 (5784): Successfully stopped VM.
2026-01-11 05:51:06 (5784): Deregistering VM. (boinc_e596073ad9cd904f, slot#3)
2026-01-11 05:51:06 (5784): Removing network bandwidth throttle group from VM.
2026-01-11 05:51:06 (5784): Removing VM from VirtualBox.
2026-01-11 05:51:11 (5784): called boinc_finish(0)

</stderr_txt>
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