Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:51:04 (1756670): wrapper (7.7.26015): starting
16:51:04 (1756670): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 16:51:04] Arguments: --nthreads 4
[2026-01-10 16:51:04] Threads: 4
[2026-01-10 16:51:04] Checking for CVMFS
[2026-01-10 16:51:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 16:51:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 16:51:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 16:51:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 16:51:04] 2.9.2.0 569242 4315 100908 154984 1 90 21303551 36864001 0 130560 0 3194315 99.990 158126 3663 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 16:51:04] CVMFS is ok
[2026-01-10 16:51:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 16:51:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 16:51:04] Further information can be found at the LHC@home message board.
[2026-01-10 16:51:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 16:51:04] Checking for apptainer binary...
[2026-01-10 16:51:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 16:51:04] Running /usr/bin/apptainer --version
[2026-01-10 16:51:04] apptainer version 1.4.1-1.1
[2026-01-10 16:51:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 16:51:05] thA369a
[2026-01-10 16:51:05] apptainer works
[2026-01-10 16:51:05] Set ATHENA_PROC_NUMBER=4
[2026-01-10 16:51:05] Set ATHENA_CORE_NUMBER=4
[2026-01-10 16:51:05] Starting ATLAS job with PandaID=6965384207
[2026-01-10 16:51:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 17:22:29]  *** The last 200 lines of the pilot log: ***
[2026-01-10 17:22:29] 2026-01-10 16:21:58,763 | INFO     | --- collectZombieJob: --- 10, [1767007]
[2026-01-10 17:22:29] 2026-01-10 16:21:58,763 | INFO     | zombie collector waiting for pid 1767007
[2026-01-10 17:22:29] 2026-01-10 16:21:58,763 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 17:22:29] 2026-01-10 16:21:58,763 | INFO     | collected zombie processes
[2026-01-10 17:22:29] 2026-01-10 16:21:58,763 | INFO     | will attempt to kill all subprocesses of pid=1767007
[2026-01-10 17:22:29] 2026-01-10 16:21:58,807 | INFO     | process IDs to be killed: [1767007] (in reverse order)
[2026-01-10 17:22:29] 2026-01-10 16:21:58,833 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 17:22:29] 2026-01-10 16:21:58,833 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 17:22:29] 2026-01-10 16:21:58,834 | INFO     | did not find any defunct processes belonging to 1767007
[2026-01-10 17:22:29] 2026-01-10 16:21:58,835 | INFO     | did not find any defunct processes belonging to 1767007
[2026-01-10 17:22:29] 2026-01-10 16:21:58,836 | INFO     | ready for new job
[2026-01-10 17:22:29] 2026-01-10 16:21:58,836 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 17:22:29] 2026-01-10 16:21:58,836 | INFO     | ***************************************
[2026-01-10 17:22:29] 2026-01-10 16:21:58,836 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 17:22:29] 2026-01-10 16:21:58,836 | INFO     | ***************************************
[2026-01-10 17:22:29] 2026-01-10 16:21:58,836 | INFO     | 
[2026-01-10 17:22:29] 2026-01-10 16:21:58,837 | INFO     | architecture information:
[2026-01-10 17:22:29] 2026-01-10 16:21:58,837 | INFO     | executing command: cat /etc/os-release
[2026-01-10 17:22:29] 2026-01-10 16:21:58,846 | INFO     | cat /etc/os-release:
[2026-01-10 17:22:29] NAME="CentOS Linux"
[2026-01-10 17:22:29] VERSION="7 (Core)"
[2026-01-10 17:22:29] ID="centos"
[2026-01-10 17:22:29] ID_LIKE="rhel fedora"
[2026-01-10 17:22:29] VERSION_ID="7"
[2026-01-10 17:22:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 17:22:29] ANSI_COLOR="0;31"
[2026-01-10 17:22:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 17:22:29] HOME_URL="https://www.centos.org/"
[2026-01-10 17:22:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 17:22:29] 
[2026-01-10 17:22:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 17:22:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 17:22:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 17:22:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 17:22:29] 
[2026-01-10 17:22:29] 2026-01-10 16:21:58,846 | INFO     | ***************************************
[2026-01-10 17:22:29] 2026-01-10 16:21:59,349 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 17:22:29] 2026-01-10 16:21:59,362 | INFO     | sufficient remaining disk space (239965569024 B)
[2026-01-10 17:22:29] 2026-01-10 16:21:59,362 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 17:22:29] 2026-01-10 16:21:59,362 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 17:22:29] 2026-01-10 16:21:59,363 | INFO     | update_server=False
[2026-01-10 17:22:29] 2026-01-10 16:21:59,363 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 17:22:29] 2026-01-10 16:21:59,363 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 17:22:29] 2026-01-10 16:21:59,363 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 17:22:29] 2026-01-10 16:21:59,363 | INFO     | aborting loop
[2026-01-10 17:22:29] 2026-01-10 16:21:59,450 | INFO     | all job control threads have been joined
[2026-01-10 17:22:29] 2026-01-10 16:21:59,612 | INFO     | all data control threads have been joined
[2026-01-10 17:22:29] 2026-01-10 16:21:59,892 | INFO     | all payload control threads have been joined
[2026-01-10 17:22:29] 2026-01-10 16:22:00,201 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 17:22:29] 2026-01-10 16:22:00,368 | INFO     | [job] queue monitor thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:00,368 | INFO     | [job] retrieve thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:00,369 | INFO     | [job] job monitor thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:00,412 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:00,456 | INFO     | [job] control thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:00,531 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 17:22:29] 2026-01-10 16:22:00,617 | INFO     | [data] control thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:00,898 | INFO     | [payload] control thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:00,939 | INFO     | [payload] validate_post thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:01,152 | INFO     | [data] copytool_in thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:01,347 | INFO     | [payload] failed_post thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:01,633 | INFO     | [job] validate thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:01,666 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:01,720 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:02,207 | INFO     | [data] copytool_out thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:04,538 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:09,584 | INFO     | job.realtimelogging is not enabled
[2026-01-10 17:22:29] 2026-01-10 16:22:10,590 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 17:22:29] 2026-01-10 16:22:12,621 | INFO     | [monitor] cgroup control has ended
[2026-01-10 17:22:29] 2026-01-10 16:22:12,923 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140498104022848)>', '<ExcThread(monitor, started 140497616094976)>']
[2026-01-10 17:22:29] 2026-01-10 16:22:17,942 | INFO     | all workflow threads have been joined
[2026-01-10 17:22:29] 2026-01-10 16:22:17,942 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 17:22:29] 2026-01-10 16:22:17,942 | INFO     | traces error code: 0
[2026-01-10 17:22:29] 2026-01-10 16:22:17,942 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 17:22:29] 2026-01-10 16:22:29,692 | INFO     | PID=1760449 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 17:22:29] 2026-01-10 16:22:29,692 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 17:22:29] 2026-01-10 16:22:29,692 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 17:22:29] 2026-01-10 16:22:29,692 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 17:22:29] 2026-01-10 16:22:29,692 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 17:22:29] 2026-01-10 16:22:29,692 | INFO     | [monitor] control thread has ended
[2026-01-10 17:22:29] 2026-01-10 16:22:29,743 [wrapper] ==== pilot stdout END ====
[2026-01-10 17:22:29] 2026-01-10 16:22:29,745 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 17:22:29] 2026-01-10 16:22:29,748 [wrapper] pilotpid: 1760449
[2026-01-10 17:22:29] 2026-01-10 16:22:29,750 [wrapper] Pilot exit status: 0
[2026-01-10 17:22:29] 2026-01-10 16:22:29,757 [wrapper] pandaids: 6965384207
[2026-01-10 17:22:29] 2026-01-10 16:22:29,774 [wrapper] cleanup supervisor_pilot 1774364 1760450
[2026-01-10 17:22:29] 2026-01-10 16:22:29,776 [wrapper] Test setup, not cleaning
[2026-01-10 17:22:29] 2026-01-10 16:22:29,779 [wrapper] apfmon messages muted
[2026-01-10 17:22:29] 2026-01-10 16:22:29,781 [wrapper] ==== wrapper stdout END ====
[2026-01-10 17:22:29] 2026-01-10 16:22:29,784 [wrapper] ==== wrapper stderr END ====
[2026-01-10 17:22:29]  *** Error codes and diagnostics ***
[2026-01-10 17:22:29]     "exeErrorCode": 0,
[2026-01-10 17:22:29]     "exeErrorDiag": "",
[2026-01-10 17:22:29]     "pilotErrorCode": 0,
[2026-01-10 17:22:29]     "pilotErrorDiag": "",
[2026-01-10 17:22:29]  *** Listing of results directory ***
[2026-01-10 17:22:29] total 434400
[2026-01-10 17:22:29] -rw-r--r-- 1 boinc boinc      5112 Jan 10 14:13 queuedata.json
[2026-01-10 17:22:29] -rw-r--r-- 1 boinc boinc    579449 Jan 10 14:14 pilot3.tar.gz
[2026-01-10 17:22:29] -rwx------ 1 boinc boinc     36322 Jan 10 14:14 runpilot2-wrapper.sh
[2026-01-10 17:22:29] -rw-r--r-- 1 boinc boinc       100 Jan 10 16:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 17:22:29] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 16:51 run_atlas
[2026-01-10 17:22:29] -rw-r--r-- 1 boinc boinc       105 Jan 10 16:51 job.xml
[2026-01-10 17:22:29] -rw-r--r-- 2 boinc boinc 392461642 Jan 10 16:51 EVNT.47962006._000093.pool.root.1
[2026-01-10 17:22:29] -rw-r--r-- 2 boinc boinc    592619 Jan 10 16:51 input.tar.gz
[2026-01-10 17:22:29] -rw-r--r-- 2 boinc boinc     15847 Jan 10 16:51 start_atlas.sh
[2026-01-10 17:22:29] drwxrwx--x 2 boinc boinc      4096 Jan 10 16:51 shared
[2026-01-10 17:22:29] -rw-r--r-- 1 boinc boinc         0 Jan 10 16:51 boinc_setup_complete
[2026-01-10 17:22:29] -rw-r--r-- 1 boinc boinc      6443 Jan 10 16:51 init_data.xml
[2026-01-10 17:22:29] -rw-r--r-- 1 boinc boinc         0 Jan 10 16:51 boinc_lockfile
[2026-01-10 17:22:29] -rw-r--r-- 1 boinc boinc      2889 Jan 10 16:51 pandaJob.out
[2026-01-10 17:22:29] -rw------- 1 boinc boinc    989556 Jan 10 16:51 agis_schedconf.cvmfs.json
[2026-01-10 17:22:29] -rw------- 1 boinc boinc   1516240 Jan 10 16:51 agis_ddmendpoints.agis.ALL.json
[2026-01-10 17:22:29] drwx------ 5 boinc boinc      4096 Jan 10 16:51 pilot3
[2026-01-10 17:22:29] -rw-r--r-- 1 boinc boinc       528 Jan 10 17:18 boinc_task_state.xml
[2026-01-10 17:22:29] -rw------- 1 boinc boinc  46392039 Jan 10 17:21 HITS.47962010._002348.pool.root.1
[2026-01-10 17:22:29] -rw------- 1 boinc boinc      1008 Jan 10 17:21 memory_monitor_summary.json
[2026-01-10 17:22:29] -rw------- 1 boinc boinc    721941 Jan 10 17:21 log.47962010._002348.job.log.tgz.1
[2026-01-10 17:22:29] -rw------- 1 boinc boinc      8511 Jan 10 17:21 heartbeat.json
[2026-01-10 17:22:29] -rw-r--r-- 1 boinc boinc        26 Jan 10 17:21 wrapper_checkpoint.txt
[2026-01-10 17:22:29] -rw-r--r-- 1 boinc boinc      8192 Jan 10 17:21 boinc_mmap_file
[2026-01-10 17:22:29] -rw------- 1 boinc boinc       747 Jan 10 17:22 pilotlog.txt
[2026-01-10 17:22:29] -rw------- 1 boinc boinc        95 Jan 10 17:22 pilot_heartbeat.json
[2026-01-10 17:22:29] -rw------- 1 boinc boinc    311241 Jan 10 17:22 log.47962010._002348.job.log.1
[2026-01-10 17:22:29] -rw------- 1 boinc boinc       353 Jan 10 17:22 output.list
[2026-01-10 17:22:29] -rw-r--r-- 1 boinc boinc       620 Jan 10 17:22 runtime_log
[2026-01-10 17:22:29] -rw------- 1 boinc boinc   1054720 Jan 10 17:22 result.tar.gz
[2026-01-10 17:22:29] -rw-r--r-- 1 boinc boinc      8902 Jan 10 17:22 runtime_log.err
[2026-01-10 17:22:29] -rw------- 1 boinc boinc       658 Jan 10 17:22 moVKDmSyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmoYhKDmHnTwvm.diag
[2026-01-10 17:22:29] -rw-r--r-- 1 boinc boinc     10709 Jan 10 17:22 stderr.txt
[2026-01-10 17:22:29] HITS file was successfully produced:
[2026-01-10 17:22:29] -rw------- 1 boinc boinc 46392039 Jan 10 17:21 shared/HITS.pool.root.1
[2026-01-10 17:22:29]  *** Contents of shared directory: ***
[2026-01-10 17:22:29] total 430208
[2026-01-10 17:22:29] -rw-r--r-- 2 boinc boinc 392461642 Jan 10 16:51 ATLAS.root_0
[2026-01-10 17:22:29] -rw-r--r-- 2 boinc boinc    592619 Jan 10 16:51 input.tar.gz
[2026-01-10 17:22:29] -rw-r--r-- 2 boinc boinc     15847 Jan 10 16:51 start_atlas.sh
[2026-01-10 17:22:29] -rw------- 1 boinc boinc  46392039 Jan 10 17:21 HITS.pool.root.1
[2026-01-10 17:22:29] -rw------- 1 boinc boinc   1054720 Jan 10 17:22 result.tar.gz
17:22:31 (1756670): run_atlas exited; CPU time 5279.730317
17:22:31 (1756670): called boinc_finish(0)

</stderr_txt>
]]>

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