Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:19:52 (3280111): wrapper (7.7.26015): starting
08:19:52 (3280111): wrapper: running run_atlas (--nthreads 9)
[2026-01-10 08:19:52] Arguments: --nthreads 9
[2026-01-10 08:19:52] Threads: 9
[2026-01-10 08:19:52] Checking for CVMFS
[2026-01-10 08:19:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:19:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:19:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:19:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:19:53] 2.13.3.0 8635 24369 156240 154981 1 127 34124509 40960000 17148 16776704 0 37276110 99.763 22002939 38911 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 08:19:53] CVMFS is ok
[2026-01-10 08:19:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:19:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:19:53] Further information can be found at the LHC@home message board.
[2026-01-10 08:19:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:19:53] Checking for apptainer binary...
[2026-01-10 08:19:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:19:53] Running /usr/bin/apptainer --version
[2026-01-10 08:19:53] apptainer version 1.4.5-2.el9
[2026-01-10 08:19:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:19:53] c-212-8.aglt2.org
[2026-01-10 08:19:53] apptainer works
[2026-01-10 08:19:53] Set ATHENA_PROC_NUMBER=9
[2026-01-10 08:19:53] Set ATHENA_CORE_NUMBER=9
[2026-01-10 08:19:53] Starting ATLAS job with PandaID=6965384021
[2026-01-10 08:19:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 09:12:26]  *** The last 200 lines of the pilot log: ***
[2026-01-10 09:12:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 09:12:26]  replicas=None
[2026-01-10 09:12:26]  scope=mc16_13TeV
[2026-01-10 09:12:26]  status=None
[2026-01-10 09:12:26]  status_code=0
[2026-01-10 09:12:26]  storage_token=
[2026-01-10 09:12:26]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6965384021/log.47962010._002162.job.log.tgz.1
[2026-01-10 09:12:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/8c/44/log.47962010._002162.job.log.tgz.1
[2026-01-10 09:12:26]  workdir=None
[2026-01-10 09:12:26] ]
[2026-01-10 09:12:26] 2026-01-10 14:11:12,902 | INFO     | transferring file log.47962010._002162.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6965384021/log.47962010._002162.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 09:12:26] 2026-01-10 14:11:12,902 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6965384021/log.47962010._002162.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._002162.job
[2026-01-10 09:12:26] 2026-01-10 14:11:12,924 | INFO     | adding to output.list: log.47962010._002162.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/8c/44/log.47962010._002162.job.log.tgz.
[2026-01-10 09:12:26] 2026-01-10 14:11:12,925 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 09:12:26] 2026-01-10 14:11:12,925 | INFO     | summary of transferred files:
[2026-01-10 09:12:26] 2026-01-10 14:11:12,925 | INFO     |  -- lfn=log.47962010._002162.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 09:12:26] 2026-01-10 14:11:12,926 | INFO     | stage-out finished correctly
[2026-01-10 09:12:26] 2026-01-10 14:11:13,630 | INFO     | time since job start (3059s) is within the limit (349056.0s)
[2026-01-10 09:12:26] 2026-01-10 14:11:14,935 | INFO     | monitor loop #216: job 0:6965384021 is in state 'finished'
[2026-01-10 09:12:26] 2026-01-10 14:11:14,935 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:12:26] 2026-01-10 14:11:15,637 | INFO     | time since job start (3061s) is within the limit (349056.0s)
[2026-01-10 09:12:26] 2026-01-10 14:11:15,701 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 09:12:26] 2026-01-10 14:11:16,395 | INFO     | job 6965384021 has state=finished
[2026-01-10 09:12:26] 2026-01-10 14:11:16,395 | INFO     | preparing for final server update for job 6965384021 in state='finished'
[2026-01-10 09:12:26] 2026-01-10 14:11:16,396 | INFO     | this job has now completed (state=finished)
[2026-01-10 09:12:26] 2026-01-10 14:11:16,396 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 09:12:26] 2026-01-10 14:11:16,396 | INFO     | log transfer has been attempted: DONE
[2026-01-10 09:12:26] 2026-01-10 14:11:16,396 | INFO     | job 6965384021 has finished - writing final server update
[2026-01-10 09:12:26] 2026-01-10 14:11:16,396 | INFO     | total number of processed events: 50 (read)
[2026-01-10 09:12:26] 2026-01-10 14:11:16,397 | INFO     | executing command: lscpu
[2026-01-10 09:12:26] 2026-01-10 14:11:16,472 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 09:12:26] 2026-01-10 14:11:17,449 | INFO     | monitor loop #217: job 0:6965384021 is in state 'finished'
[2026-01-10 09:12:26] 2026-01-10 14:11:17,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:12:26] 2026-01-10 14:11:17,643 | INFO     | time since job start (3063s) is within the limit (349056.0s)
[2026-01-10 09:12:26] 2026-01-10 14:11:19,650 | INFO     | time since job start (3065s) is within the limit (349056.0s)
[2026-01-10 09:12:26] 2026-01-10 14:11:19,956 | INFO     | monitor loop #218: job 0:6965384021 is in state 'finished'
[2026-01-10 09:12:26] 2026-01-10 14:11:19,956 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:12:26] 2026-01-10 14:11:21,657 | INFO     | time since job start (3067s) is within the limit (349056.0s)
[2026-01-10 09:12:26] 2026-01-10 14:11:22,460 | INFO     | monitor loop #219: job 0:6965384021 is in state 'finished'
[2026-01-10 09:12:26] 2026-01-10 14:11:22,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:12:26] 2026-01-10 14:11:22,874 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 09:12:26] 2026-01-10 14:11:22,880 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3204.8819375000007
[2026-01-10 09:12:26] 2026-01-10 14:11:22,895 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965384021/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 09:12:26] 2026-01-10 14:11:22,896 | INFO     | extracted standard info from prmon json
[2026-01-10 09:12:26] 2026-01-10 14:11:22,896 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 09:12:26] 2026-01-10 14:11:22,896 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 09:12:26] 2026-01-10 14:11:22,897 | INFO     | fitting pss+swap vs Time
[2026-01-10 09:12:26] 2026-01-10 14:11:22,897 | INFO     | sum of square deviations: 24627559.116279062
[2026-01-10 09:12:26] 2026-01-10 14:11:22,898 | INFO     | sum of deviations: -4342990179.883721
[2026-01-10 09:12:26] 2026-01-10 14:11:22,898 | INFO     | mean x: 1768052862.2093024
[2026-01-10 09:12:26] 2026-01-10 14:11:22,898 | INFO     | mean y: 2574590.2093023257
[2026-01-10 09:12:26] 2026-01-10 14:11:22,898 | INFO     | intersect: 311792962822.98596
[2026-01-10 09:12:26] 2026-01-10 14:11:22,898 | INFO     | chi2: 0.7306488943171436
[2026-01-10 09:12:26] 2026-01-10 14:11:22,898 | INFO     | current memory leak: -176.35 B/s (using 43 data points, chi2=0.73)
[2026-01-10 09:12:26] 2026-01-10 14:11:22,898 | INFO     | could have reported an average CPU frequency of 3214 MHz (5 samples)
[2026-01-10 09:12:26] 2026-01-10 14:11:22,919 | INFO     | ..............................
[2026-01-10 09:12:26] 2026-01-10 14:11:22,919 | INFO     | . Timing measurements:
[2026-01-10 09:12:26] 2026-01-10 14:11:22,919 | INFO     | . get job = 0 s
[2026-01-10 09:12:26] 2026-01-10 14:11:22,919 | INFO     | . initial setup = 2 s
[2026-01-10 09:12:26] 2026-01-10 14:11:22,919 | INFO     | . payload setup = 17 s
[2026-01-10 09:12:26] 2026-01-10 14:11:22,919 | INFO     | . stage-in = 0 s
[2026-01-10 09:12:26] 2026-01-10 14:11:22,919 | INFO     | . payload execution = 3001 s
[2026-01-10 09:12:26] 2026-01-10 14:11:22,919 | INFO     | . stage-out = 0 s
[2026-01-10 09:12:26] 2026-01-10 14:11:22,919 | INFO     | . log creation = 0 s
[2026-01-10 09:12:26] 2026-01-10 14:11:22,920 | INFO     | ..............................
[2026-01-10 09:12:26] 2026-01-10 14:11:23,029 | INFO     | 
[2026-01-10 09:12:26] 2026-01-10 14:11:23,030 | INFO     | job summary report
[2026-01-10 09:12:26] 2026-01-10 14:11:23,030 | INFO     | --------------------------------------------------
[2026-01-10 09:12:26] 2026-01-10 14:11:23,030 | INFO     | PanDA job id: 6965384021
[2026-01-10 09:12:26] 2026-01-10 14:11:23,030 | INFO     | task id: 47962010
[2026-01-10 09:12:26] 2026-01-10 14:11:23,030 | INFO     | errors: (none)
[2026-01-10 09:12:26] 2026-01-10 14:11:23,030 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 09:12:26] 2026-01-10 14:11:23,030 | INFO     | pilot state: finished 
[2026-01-10 09:12:26] 2026-01-10 14:11:23,030 | INFO     | transexitcode: 0
[2026-01-10 09:12:26] 2026-01-10 14:11:23,030 | INFO     | exeerrorcode: 0
[2026-01-10 09:12:26] 2026-01-10 14:11:23,030 | INFO     | exeerrordiag: 
[2026-01-10 09:12:26] 2026-01-10 14:11:23,030 | INFO     | exitcode: 0
[2026-01-10 09:12:26] 2026-01-10 14:11:23,031 | INFO     | exitmsg: OK
[2026-01-10 09:12:26] 2026-01-10 14:11:23,031 | INFO     | cpuconsumptiontime: 12108 s
[2026-01-10 09:12:26] 2026-01-10 14:11:23,031 | INFO     | nevents: 50
[2026-01-10 09:12:26] 2026-01-10 14:11:23,031 | INFO     | neventsw: 0
[2026-01-10 09:12:26] 2026-01-10 14:11:23,031 | INFO     | pid: 3300417
[2026-01-10 09:12:26] 2026-01-10 14:11:23,031 | INFO     | pgrp: 3300417
[2026-01-10 09:12:26] 2026-01-10 14:11:23,031 | INFO     | corecount: 9
[2026-01-10 09:12:26] 2026-01-10 14:11:23,031 | INFO     | event service: False
[2026-01-10 09:12:26] 2026-01-10 14:11:23,031 | INFO     | sizes: {0: 2284398, 1: 2284597, 11: 2284597, 12: 2284887, 22: 2284915, 3023: 2309914, 3025: 2318908, 3028: 2318964, 3035: 2319242}
[2026-01-10 09:12:26] 2026-01-10 14:11:23,031 | INFO     | --------------------------------------------------
[2026-01-10 09:12:26] 2026-01-10 14:11:23,031 | INFO     | 
[2026-01-10 09:12:26] 2026-01-10 14:11:23,031 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 09:12:26] 2026-01-10 14:11:23,063 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,063 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,063 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,063 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,063 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,063 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,064 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,064 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,064 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,064 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,064 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,064 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,064 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,064 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,064 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,064 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,064 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,064 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 09:12:26] 2026-01-10 14:11:23,065 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,065 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 09:12:26] 2026-01-10 14:11:23,065 | INFO     | job 6965384021 has completed (purged errors)
[2026-01-10 09:12:26] 2026-01-10 14:11:23,065 | INFO     | overall cleanup function is called
[2026-01-10 09:12:26] 2026-01-10 14:11:24,076 | INFO     | --- collectZombieJob: --- 10, [3300417]
[2026-01-10 09:12:26] 2026-01-10 14:11:24,077 | INFO     | zombie collector waiting for pid 3300417
[2026-01-10 09:12:26] 2026-01-10 14:11:24,077 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 09:12:26] 2026-01-10 14:11:24,077 | INFO     | collected zombie processes
[2026-01-10 09:12:26] 2026-01-10 14:11:24,077 | INFO     | will attempt to kill all subprocesses of pid=3300417
[2026-01-10 09:12:26] 2026-01-10 14:11:24,758 | INFO     | process IDs to be killed: [3300417] (in reverse order)
[2026-01-10 09:12:26] 2026-01-10 14:11:24,892 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 09:12:26] 2026-01-10 14:11:24,892 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 09:12:26] 2026-01-10 14:11:24,906 | INFO     | did not find any defunct processes belonging to 3300417
[2026-01-10 09:12:26] 2026-01-10 14:11:24,917 | INFO     | did not find any defunct processes belonging to 3300417
[2026-01-10 09:12:26] 2026-01-10 14:11:24,918 | INFO     | ready for new job
[2026-01-10 09:12:26] 2026-01-10 14:11:24,918 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 09:12:26] 2026-01-10 14:11:24,920 | INFO     | ***************************************
[2026-01-10 09:12:26] 2026-01-10 14:11:24,920 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 09:12:26] 2026-01-10 14:11:24,920 | INFO     | ***************************************
[2026-01-10 09:12:26] 2026-01-10 14:11:24,920 | INFO     | 
[2026-01-10 09:12:26] 2026-01-10 14:11:24,944 | INFO     | architecture information:
[2026-01-10 09:12:26] 2026-01-10 14:11:24,945 | INFO     | executing command: cat /etc/os-release
[2026-01-10 09:12:26] 2026-01-10 14:11:24,963 | INFO     | cat /etc/os-release:
[2026-01-10 09:12:26] NAME="CentOS Linux"
[2026-01-10 09:12:26] VERSION="7 (Core)"
[2026-01-10 09:12:26] ID="centos"
[2026-01-10 09:12:26] ID_LIKE="rhel fedora"
[2026-01-10 09:12:26] VERSION_ID="7"
[2026-01-10 09:12:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 09:12:26] ANSI_COLOR="0;31"
[2026-01-10 09:12:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 09:12:26] HOME_URL="https://www.centos.org/"
[2026-01-10 09:12:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 09:12:26] 
[2026-01-10 09:12:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 09:12:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 09:12:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 09:12:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 09:12:26] 
[2026-01-10 09:12:26] 2026-01-10 14:11:24,963 | INFO     | ***************************************
[2026-01-10 09:12:26] 2026-01-10 14:11:25,468 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 09:12:26] 2026-01-10 14:11:25,490 | INFO     | sufficient remaining disk space (126794858496 B)
[2026-01-10 09:12:26] 2026-01-10 14:11:25,490 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 09:12:26] 2026-01-10 14:11:25,490 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 09:12:26] 2026-01-10 14:11:25,491 | INFO     | update_server=False
[2026-01-10 09:12:26] 2026-01-10 14:11:25,491 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 09:12:26] 2026-01-10 14:11:25,574 | INFO     | all payload control threads have been joined
[2026-01-10 09:12:26] 2026-01-10 14:11:25,950 | INFO     | all data control threads have been joined
[2026-01-10 09:12:26] 2026-01-10 14:11:25,971 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:12:26] 2026-01-10 14:11:25,971 | INFO     | aborting loop
[2026-01-10 09:12:26] 2026-01-10 14:11:26,066 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 09:12:26] 2026-01-10 14:11:26,334 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 09:12:26] 2026-01-10 14:11:26,368 | INFO     | all job control threads have been joined
[2026-01-10 09:12:26] 2026-01-10 14:11:26,497 | INFO     | [job] retrieve thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:26,580 | INFO     | [payload] control thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:26,956 | INFO     | [data] control thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:26,977 | INFO     | [job] job monitor thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:27,107 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:27,333 | INFO     | [job] validate thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:27,374 | INFO     | [job] control thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:27,451 | INFO     | [data] copytool_in thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:27,708 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:27,712 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:27,751 | INFO     | [payload] validate_post thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:27,935 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:27,957 | INFO     | [payload] failed_post thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:28,017 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:12:26] 2026-01-10 14:11:28,073 | INFO     | [data] copytool_out thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:29,022 | INFO     | [job] queue monitor thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:30,352 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 09:12:26] 2026-01-10 14:11:55,306 | INFO     | PID=3285132 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 09:12:26] 2026-01-10 14:11:55,306 | INFO     | .. there are 16 such processes running
[2026-01-10 09:12:26] 2026-01-10 14:11:55,306 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 09:12:26] 2026-01-10 14:11:55,306 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 09:12:26] 2026-01-10 14:11:55,306 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 09:12:26] 2026-01-10 14:12:19,399 | INFO     | [monitor] cgroup control has ended
[2026-01-10 09:12:26] 2026-01-10 14:12:19,807 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139900147091264)>', '<ExcThread(monitor, started 139899793549056)>']
[2026-01-10 09:12:26] 2026-01-10 14:12:20,480 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 09:12:26] 2026-01-10 14:12:20,480 | INFO     | [monitor] control thread has ended
[2026-01-10 09:12:26] 2026-01-10 14:12:24,834 | INFO     | all workflow threads have been joined
[2026-01-10 09:12:26] 2026-01-10 14:12:24,834 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 09:12:26] 2026-01-10 14:12:24,834 | INFO     | traces error code: 0
[2026-01-10 09:12:26] 2026-01-10 14:12:24,834 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 09:12:26] 2026-01-10 14:12:25,361 [wrapper] ==== pilot stdout END ====
[2026-01-10 09:12:26] 2026-01-10 14:12:25,369 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 09:12:26] 2026-01-10 14:12:25,383 [wrapper] pilotpid: 3285132
[2026-01-10 09:12:26] 2026-01-10 14:12:25,392 [wrapper] Pilot exit status: 0
[2026-01-10 09:12:26] 2026-01-10 14:12:25,439 [wrapper] pandaids: 6965384021
[2026-01-10 09:12:26] 2026-01-10 14:12:25,559 [wrapper] cleanup supervisor_pilot 3407362 3285133
[2026-01-10 09:12:26] 2026-01-10 14:12:25,576 [wrapper] Test setup, not cleaning
[2026-01-10 09:12:26] 2026-01-10 14:12:25,597 [wrapper] apfmon messages muted
[2026-01-10 09:12:26] 2026-01-10 14:12:25,614 [wrapper] ==== wrapper stdout END ====
[2026-01-10 09:12:26] 2026-01-10 14:12:25,640 [wrapper] ==== wrapper stderr END ====
[2026-01-10 09:12:26]  *** Error codes and diagnostics ***
[2026-01-10 09:12:26]     "exeErrorCode": 0,
[2026-01-10 09:12:26]     "exeErrorDiag": "",
[2026-01-10 09:12:26]     "pilotErrorCode": 0,
[2026-01-10 09:12:26]     "pilotErrorDiag": "",
[2026-01-10 09:12:26]  *** Listing of results directory ***
[2026-01-10 09:12:26] total 434848
[2026-01-10 09:12:26] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:13 queuedata.json
[2026-01-10 09:12:26] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 09:12:26] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 09:12:26] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 09:12:26] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:19 run_atlas
[2026-01-10 09:12:26] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:19 job.xml
[2026-01-10 09:12:26] -rw-r--r--. 2 boincer umatlas 392755774 Jan 10 08:19 EVNT.47962006._000073.pool.root.1
[2026-01-10 09:12:26] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:19 start_atlas.sh
[2026-01-10 09:12:26] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:19 shared
[2026-01-10 09:12:26] -rw-r--r--. 2 boincer umatlas    592619 Jan 10 08:19 input.tar.gz
[2026-01-10 09:12:26] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:19 boinc_lockfile
[2026-01-10 09:12:26] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 08:19 pandaJob.out
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas        57 Jan 10 08:19 setup.sh.local
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas    989556 Jan 10 08:20 agis_schedconf.cvmfs.json
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas   1516240 Jan 10 08:20 agis_ddmendpoints.agis.ALL.json
[2026-01-10 09:12:26] drwx------. 5 boincer umatlas      4096 Jan 10 08:20 pilot3
[2026-01-10 09:12:26] -rw-r--r--. 1 boincer umatlas       529 Jan 10 09:01 boinc_task_state.xml
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas  45122503 Jan 10 09:10 HITS.47962010._002162.pool.root.1
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas        95 Jan 10 09:10 pilot_heartbeat.json
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas      1026 Jan 10 09:11 memory_monitor_summary.json
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas   1283358 Jan 10 09:11 log.47962010._002162.job.log.tgz.1
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas      7861 Jan 10 09:11 heartbeat.json
[2026-01-10 09:12:26] -rw-r--r--. 1 boincer umatlas      6953 Jan 10 09:11 init_data.xml
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas      4825 Jan 10 09:12 pilotlog.txt
[2026-01-10 09:12:26] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 09:12 boinc_mmap_file
[2026-01-10 09:12:26] -rw-r--r--. 1 boincer umatlas        27 Jan 10 09:12 wrapper_checkpoint.txt
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas    461515 Jan 10 09:12 log.47962010._002162.job.log.1
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas       353 Jan 10 09:12 output.list
[2026-01-10 09:12:26] -rw-r--r--. 1 boincer umatlas       620 Jan 10 09:12 runtime_log
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas   1761280 Jan 10 09:12 result.tar.gz
[2026-01-10 09:12:26] -rw-r--r--. 1 boincer umatlas      9337 Jan 10 09:12 runtime_log.err
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas       651 Jan 10 09:12 b4dKDmOyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZYhKDmVGE8un.diag
[2026-01-10 09:12:26] -rw-r--r--. 1 boincer umatlas     22032 Jan 10 09:12 stderr.txt
[2026-01-10 09:12:26] HITS file was successfully produced:
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas 45122503 Jan 10 09:10 shared/HITS.pool.root.1
[2026-01-10 09:12:26]  *** Contents of shared directory: ***
[2026-01-10 09:12:26] total 429944
[2026-01-10 09:12:26] -rw-r--r--. 2 boincer umatlas 392755774 Jan 10 08:19 ATLAS.root_0
[2026-01-10 09:12:26] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:19 start_atlas.sh
[2026-01-10 09:12:26] -rw-r--r--. 2 boincer umatlas    592619 Jan 10 08:19 input.tar.gz
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas  45122503 Jan 10 09:10 HITS.pool.root.1
[2026-01-10 09:12:26] -rw-------. 1 boincer umatlas   1761280 Jan 10 09:12 result.tar.gz
09:12:47 (3280111): run_atlas exited; CPU time 12090.179847
09:12:47 (3280111): called boinc_finish(0)

</stderr_txt>
]]>

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