Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:39:26 (1350258): wrapper (7.7.26015): starting
08:39:26 (1350258): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 08:39:26] Arguments: --nthreads 8
[2026-01-10 08:39:26] Threads: 8
[2026-01-10 08:39:26] Checking for CVMFS
[2026-01-10 08:39:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:39:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:39:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:39:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:39:29] 2.13.3.0 5924 23020 178580 154981 1 98 20741854 39288833 6776 16776704 0 10461166 99.589 16126076 41979 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 08:39:29] CVMFS is ok
[2026-01-10 08:39:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:39:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:39:29] Further information can be found at the LHC@home message board.
[2026-01-10 08:39:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:39:29] Checking for apptainer binary...
[2026-01-10 08:39:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:39:29] Running /usr/bin/apptainer --version
[2026-01-10 08:39:29] apptainer version 1.4.5-2.el9
[2026-01-10 08:39:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:39:30] c-210-3.aglt2.org
[2026-01-10 08:39:30] apptainer works
[2026-01-10 08:39:30] Set ATHENA_PROC_NUMBER=8
[2026-01-10 08:39:30] Set ATHENA_CORE_NUMBER=8
[2026-01-10 08:39:30] Starting ATLAS job with PandaID=6965384154
[2026-01-10 08:39:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 09:56:21]  *** The last 200 lines of the pilot log: ***
[2026-01-10 09:56:21]  replicas=None
[2026-01-10 09:56:21]  scope=mc16_13TeV
[2026-01-10 09:56:21]  status=None
[2026-01-10 09:56:21]  status_code=0
[2026-01-10 09:56:21]  storage_token=
[2026-01-10 09:56:21]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6965384154/log.47962010._002295.job.log.tgz.1
[2026-01-10 09:56:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/3e/4a/log.47962010._002295.job.log.tgz.1
[2026-01-10 09:56:21]  workdir=None
[2026-01-10 09:56:21] ]
[2026-01-10 09:56:21] 2026-01-10 14:55:42,064 | INFO     | time since job start (4490s) is within the limit (349056.0s)
[2026-01-10 09:56:21] 2026-01-10 14:55:42,070 | INFO     | monitor loop #346: job 0:6965384154 is in state 'stageout'
[2026-01-10 09:56:21] 2026-01-10 14:55:42,076 | WARNING  | aborting job monitor tasks since payload process 1366199 is not running
[2026-01-10 09:56:21] 2026-01-10 14:55:42,093 | INFO     | transferring file log.47962010._002295.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6965384154/log.47962010._002295.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 09:56:21] 2026-01-10 14:55:42,093 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6965384154/log.47962010._002295.job.log.tgz.1 /tmp/boinchome/slots/1/log.47962010._002295.job
[2026-01-10 09:56:21] 2026-01-10 14:55:42,110 | INFO     | adding to output.list: log.47962010._002295.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/3e/4a/log.47962010._002295.job.log.tgz.
[2026-01-10 09:56:21] 2026-01-10 14:55:42,111 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 09:56:21] 2026-01-10 14:55:42,111 | INFO     | summary of transferred files:
[2026-01-10 09:56:21] 2026-01-10 14:55:42,111 | INFO     |  -- lfn=log.47962010._002295.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 09:56:21] 2026-01-10 14:55:42,111 | INFO     | stage-out finished correctly
[2026-01-10 09:56:21] 2026-01-10 14:55:42,711 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-01-10 09:56:21] 2026-01-10 14:55:43,171 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 09:56:21] 2026-01-10 14:55:44,070 | INFO     | time since job start (4492s) is within the limit (349056.0s)
[2026-01-10 09:56:21] 2026-01-10 14:55:44,590 | INFO     | monitor loop #347: job 0:6965384154 is in state 'finished'
[2026-01-10 09:56:21] 2026-01-10 14:55:44,591 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:56:21] 2026-01-10 14:55:45,484 | INFO     | job 6965384154 has state=finished
[2026-01-10 09:56:21] 2026-01-10 14:55:45,484 | INFO     | preparing for final server update for job 6965384154 in state='finished'
[2026-01-10 09:56:21] 2026-01-10 14:55:45,484 | INFO     | this job has now completed (state=finished)
[2026-01-10 09:56:21] 2026-01-10 14:55:45,485 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 09:56:21] 2026-01-10 14:55:45,485 | INFO     | log transfer has been attempted: DONE
[2026-01-10 09:56:21] 2026-01-10 14:55:45,485 | INFO     | job 6965384154 has finished - writing final server update
[2026-01-10 09:56:21] 2026-01-10 14:55:45,485 | INFO     | total number of processed events: 50 (read)
[2026-01-10 09:56:21] 2026-01-10 14:55:45,486 | INFO     | executing command: lscpu
[2026-01-10 09:56:21] 2026-01-10 14:55:45,527 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 09:56:21] 2026-01-10 14:55:46,077 | INFO     | time since job start (4494s) is within the limit (349056.0s)
[2026-01-10 09:56:21] 2026-01-10 14:55:46,078 | INFO     | 4499s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-10 09:56:21] 2026-01-10 14:55:47,095 | INFO     | monitor loop #348: job 0:6965384154 is in state 'finished'
[2026-01-10 09:56:21] 2026-01-10 14:55:47,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:56:21] 2026-01-10 14:55:48,084 | INFO     | time since job start (4496s) is within the limit (349056.0s)
[2026-01-10 09:56:21] 2026-01-10 14:55:49,599 | INFO     | monitor loop #349: job 0:6965384154 is in state 'finished'
[2026-01-10 09:56:21] 2026-01-10 14:55:49,599 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:56:21] 2026-01-10 14:55:49,599 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 09:56:21] 2026-01-10 14:55:49,605 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.973975
[2026-01-10 09:56:21] 2026-01-10 14:55:49,612 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965384154/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 09:56:21] 2026-01-10 14:55:49,613 | INFO     | extracted standard info from prmon json
[2026-01-10 09:56:21] 2026-01-10 14:55:49,613 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 09:56:21] 2026-01-10 14:55:49,613 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 09:56:21] 2026-01-10 14:55:49,615 | INFO     | fitting pss+swap vs Time
[2026-01-10 09:56:21] 2026-01-10 14:55:49,616 | INFO     | sum of square deviations: 81219945.75
[2026-01-10 09:56:21] 2026-01-10 14:55:49,616 | INFO     | sum of deviations: 10377044668.6875
[2026-01-10 09:56:21] 2026-01-10 14:55:49,616 | INFO     | mean x: 1768054885.8125
[2026-01-10 09:56:21] 2026-01-10 14:55:49,616 | INFO     | mean y: 2318854.890625
[2026-01-10 09:56:21] 2026-01-10 14:55:49,616 | INFO     | intersect: -225892741248.2182
[2026-01-10 09:56:21] 2026-01-10 14:55:49,616 | INFO     | chi2: 3.874109697164485
[2026-01-10 09:56:21] 2026-01-10 14:55:49,617 | INFO     | current memory leak: 127.76 B/s (using 64 data points, chi2=3.87)
[2026-01-10 09:56:21] 2026-01-10 14:55:49,617 | INFO     | could have reported an average CPU frequency of 2599 MHz (6 samples)
[2026-01-10 09:56:21] 2026-01-10 14:55:49,617 | INFO     | ..............................
[2026-01-10 09:56:21] 2026-01-10 14:55:49,617 | INFO     | . Timing measurements:
[2026-01-10 09:56:21] 2026-01-10 14:55:49,617 | INFO     | . get job = 0 s
[2026-01-10 09:56:21] 2026-01-10 14:55:49,617 | INFO     | . initial setup = 5 s
[2026-01-10 09:56:21] 2026-01-10 14:55:49,617 | INFO     | . payload setup = 82 s
[2026-01-10 09:56:21] 2026-01-10 14:55:49,618 | INFO     | . stage-in = 0 s
[2026-01-10 09:56:21] 2026-01-10 14:55:49,618 | INFO     | . payload execution = 4310 s
[2026-01-10 09:56:21] 2026-01-10 14:55:49,618 | INFO     | . stage-out = 0 s
[2026-01-10 09:56:21] 2026-01-10 14:55:49,618 | INFO     | . log creation = 0 s
[2026-01-10 09:56:21] 2026-01-10 14:55:49,618 | INFO     | ..............................
[2026-01-10 09:56:21] 2026-01-10 14:55:49,722 | INFO     | 
[2026-01-10 09:56:21] 2026-01-10 14:55:49,723 | INFO     | job summary report
[2026-01-10 09:56:21] 2026-01-10 14:55:49,723 | INFO     | --------------------------------------------------
[2026-01-10 09:56:21] 2026-01-10 14:55:49,723 | INFO     | PanDA job id: 6965384154
[2026-01-10 09:56:21] 2026-01-10 14:55:49,723 | INFO     | task id: 47962010
[2026-01-10 09:56:21] 2026-01-10 14:55:49,723 | INFO     | errors: (none)
[2026-01-10 09:56:21] 2026-01-10 14:55:49,723 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 09:56:21] 2026-01-10 14:55:49,723 | INFO     | pilot state: finished 
[2026-01-10 09:56:21] 2026-01-10 14:55:49,723 | INFO     | transexitcode: 0
[2026-01-10 09:56:21] 2026-01-10 14:55:49,723 | INFO     | exeerrorcode: 0
[2026-01-10 09:56:21] 2026-01-10 14:55:49,723 | INFO     | exeerrordiag: 
[2026-01-10 09:56:21] 2026-01-10 14:55:49,724 | INFO     | exitcode: 0
[2026-01-10 09:56:21] 2026-01-10 14:55:49,724 | INFO     | exitmsg: OK
[2026-01-10 09:56:21] 2026-01-10 14:55:49,724 | INFO     | cpuconsumptiontime: 17621 s
[2026-01-10 09:56:21] 2026-01-10 14:55:49,724 | INFO     | nevents: 50
[2026-01-10 09:56:21] 2026-01-10 14:55:49,724 | INFO     | neventsw: 0
[2026-01-10 09:56:21] 2026-01-10 14:55:49,724 | INFO     | pid: 1366199
[2026-01-10 09:56:21] 2026-01-10 14:55:49,724 | INFO     | pgrp: 1366199
[2026-01-10 09:56:21] 2026-01-10 14:55:49,724 | INFO     | corecount: 8
[2026-01-10 09:56:21] 2026-01-10 14:55:49,724 | INFO     | event service: False
[2026-01-10 09:56:21] 2026-01-10 14:55:49,724 | INFO     | sizes: {0: 2284398, 1: 2284597, 12: 2284597, 23: 2284625, 34: 2284653, 46: 2285099, 57: 2285099, 4397: 2311886, 4400: 2320880, 4401: 2320936, 4407: 2321182}
[2026-01-10 09:56:21] 2026-01-10 14:55:49,724 | INFO     | --------------------------------------------------
[2026-01-10 09:56:21] 2026-01-10 14:55:49,724 | INFO     | 
[2026-01-10 09:56:21] 2026-01-10 14:55:49,725 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 09:56:21] 2026-01-10 14:55:49,742 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,742 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,742 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,742 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,742 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,743 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,743 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,743 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,743 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,743 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,743 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,743 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,743 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,743 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,743 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,744 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,744 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,744 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 09:56:21] 2026-01-10 14:55:49,744 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,744 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 09:56:21] 2026-01-10 14:55:49,744 | INFO     | job 6965384154 has completed (purged errors)
[2026-01-10 09:56:21] 2026-01-10 14:55:49,744 | INFO     | overall cleanup function is called
[2026-01-10 09:56:21] 2026-01-10 14:55:50,759 | INFO     | --- collectZombieJob: --- 10, [1366199]
[2026-01-10 09:56:21] 2026-01-10 14:55:50,759 | INFO     | zombie collector waiting for pid 1366199
[2026-01-10 09:56:21] 2026-01-10 14:55:50,759 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 09:56:21] 2026-01-10 14:55:50,759 | INFO     | collected zombie processes
[2026-01-10 09:56:21] 2026-01-10 14:55:50,759 | INFO     | will attempt to kill all subprocesses of pid=1366199
[2026-01-10 09:56:21] 2026-01-10 14:55:50,961 | INFO     | process IDs to be killed: [1366199] (in reverse order)
[2026-01-10 09:56:21] 2026-01-10 14:55:51,025 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 09:56:21] 2026-01-10 14:55:51,025 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 09:56:21] 2026-01-10 14:55:51,032 | INFO     | did not find any defunct processes belonging to 1366199
[2026-01-10 09:56:21] 2026-01-10 14:55:51,039 | INFO     | did not find any defunct processes belonging to 1366199
[2026-01-10 09:56:21] 2026-01-10 14:55:51,039 | INFO     | ready for new job
[2026-01-10 09:56:21] 2026-01-10 14:55:51,039 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 09:56:21] 2026-01-10 14:55:51,041 | INFO     | ***************************************
[2026-01-10 09:56:21] 2026-01-10 14:55:51,041 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 09:56:21] 2026-01-10 14:55:51,041 | INFO     | ***************************************
[2026-01-10 09:56:21] 2026-01-10 14:55:51,041 | INFO     | 
[2026-01-10 09:56:21] 2026-01-10 14:55:51,043 | INFO     | architecture information:
[2026-01-10 09:56:21] 2026-01-10 14:55:51,043 | INFO     | executing command: cat /etc/os-release
[2026-01-10 09:56:21] 2026-01-10 14:55:51,058 | INFO     | cat /etc/os-release:
[2026-01-10 09:56:21] NAME="CentOS Linux"
[2026-01-10 09:56:21] VERSION="7 (Core)"
[2026-01-10 09:56:21] ID="centos"
[2026-01-10 09:56:21] ID_LIKE="rhel fedora"
[2026-01-10 09:56:21] VERSION_ID="7"
[2026-01-10 09:56:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 09:56:21] ANSI_COLOR="0;31"
[2026-01-10 09:56:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 09:56:21] HOME_URL="https://www.centos.org/"
[2026-01-10 09:56:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 09:56:21] 
[2026-01-10 09:56:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 09:56:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 09:56:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 09:56:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 09:56:21] 
[2026-01-10 09:56:21] 2026-01-10 14:55:51,058 | INFO     | ***************************************
[2026-01-10 09:56:21] 2026-01-10 14:55:51,561 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 09:56:21] 2026-01-10 14:55:51,574 | INFO     | sufficient remaining disk space (53616836608 B)
[2026-01-10 09:56:21] 2026-01-10 14:55:51,574 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 09:56:21] 2026-01-10 14:55:51,575 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 09:56:21] 2026-01-10 14:55:51,575 | INFO     | update_server=False
[2026-01-10 09:56:21] 2026-01-10 14:55:51,575 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 09:56:21] 2026-01-10 14:55:51,575 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:56:21] 2026-01-10 14:55:51,575 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:56:21] 2026-01-10 14:55:51,575 | INFO     | aborting loop
[2026-01-10 09:56:21] 2026-01-10 14:55:51,975 | INFO     | all data control threads have been joined
[2026-01-10 09:56:21] 2026-01-10 14:55:52,127 | INFO     | all payload control threads have been joined
[2026-01-10 09:56:21] 2026-01-10 14:55:52,153 | INFO     | all job control threads have been joined
[2026-01-10 09:56:21] 2026-01-10 14:55:52,580 | INFO     | [job] retrieve thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:52,581 | INFO     | [job] queue monitor thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:52,581 | INFO     | [job] job monitor thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:52,633 | INFO     | [payload] failed_post thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:52,653 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:52,736 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 09:56:21] 2026-01-10 14:55:52,794 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:52,876 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:52,980 | INFO     | [data] control thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:53,132 | INFO     | [payload] control thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:53,157 | INFO     | [job] validate thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:53,159 | INFO     | [job] control thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:53,177 | INFO     | [data] copytool_in thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:53,780 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:53,789 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 09:56:21] 2026-01-10 14:55:53,931 | INFO     | [payload] validate_post thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:54,745 | INFO     | [data] copytool_out thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:57,797 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 09:56:21] 2026-01-10 14:55:59,170 | INFO     | [monitor] cgroup control has ended
[2026-01-10 09:56:21] 2026-01-10 14:56:00,643 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140111369684800)>', '<ExcThread(monitor, started 140110993536768)>']
[2026-01-10 09:56:21] 2026-01-10 14:56:05,668 | INFO     | all workflow threads have been joined
[2026-01-10 09:56:21] 2026-01-10 14:56:05,669 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 09:56:21] 2026-01-10 14:56:05,669 | INFO     | traces error code: 0
[2026-01-10 09:56:21] 2026-01-10 14:56:05,669 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 09:56:21] 2026-01-10 14:56:21,393 | INFO     | PID=1357118 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 09:56:21] 2026-01-10 14:56:21,393 | INFO     | .. there are 6 such processes running
[2026-01-10 09:56:21] 2026-01-10 14:56:21,394 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 09:56:21] 2026-01-10 14:56:21,394 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 09:56:21] 2026-01-10 14:56:21,394 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 09:56:21] 2026-01-10 14:56:21,394 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 09:56:21] 2026-01-10 14:56:21,394 | INFO     | [monitor] control thread has ended
[2026-01-10 09:56:21] 2026-01-10 14:56:21,498 [wrapper] ==== pilot stdout END ====
[2026-01-10 09:56:21] 2026-01-10 14:56:21,500 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 09:56:21] 2026-01-10 14:56:21,503 [wrapper] pilotpid: 1357118
[2026-01-10 09:56:21] 2026-01-10 14:56:21,506 [wrapper] Pilot exit status: 0
[2026-01-10 09:56:21] 2026-01-10 14:56:21,515 [wrapper] pandaids: 6965384154
[2026-01-10 09:56:21] 2026-01-10 14:56:21,560 [wrapper] cleanup supervisor_pilot 1490340 1357119
[2026-01-10 09:56:21] 2026-01-10 14:56:21,563 [wrapper] Test setup, not cleaning
[2026-01-10 09:56:21] 2026-01-10 14:56:21,566 [wrapper] apfmon messages muted
[2026-01-10 09:56:21] 2026-01-10 14:56:21,570 [wrapper] ==== wrapper stdout END ====
[2026-01-10 09:56:21] 2026-01-10 14:56:21,573 [wrapper] ==== wrapper stderr END ====
[2026-01-10 09:56:21]  *** Error codes and diagnostics ***
[2026-01-10 09:56:21]     "exeErrorCode": 0,
[2026-01-10 09:56:21]     "exeErrorDiag": "",
[2026-01-10 09:56:21]     "pilotErrorCode": 0,
[2026-01-10 09:56:21]     "pilotErrorDiag": "",
[2026-01-10 09:56:21]  *** Listing of results directory ***
[2026-01-10 09:56:21] total 435132
[2026-01-10 09:56:21] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:13 queuedata.json
[2026-01-10 09:56:21] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 09:56:21] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 09:56:21] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 09:56:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:39 run_atlas
[2026-01-10 09:56:21] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:39 job.xml
[2026-01-10 09:56:21] -rw-r--r--. 2 boincer umatlas 392458857 Jan 10 08:39 EVNT.47962006._000084.pool.root.1
[2026-01-10 09:56:21] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:39 start_atlas.sh
[2026-01-10 09:56:21] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:39 shared
[2026-01-10 09:56:21] -rw-r--r--. 2 boincer umatlas    592618 Jan 10 08:39 input.tar.gz
[2026-01-10 09:56:21] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:39 boinc_lockfile
[2026-01-10 09:56:21] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 08:39 pandaJob.out
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas        57 Jan 10 08:39 setup.sh.local
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas    989556 Jan 10 08:40 agis_schedconf.cvmfs.json
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas   1516240 Jan 10 08:40 agis_ddmendpoints.agis.ALL.json
[2026-01-10 09:56:21] drwx------. 5 boincer umatlas      4096 Jan 10 08:40 pilot3
[2026-01-10 09:56:21] -rw-r--r--. 1 boincer umatlas       530 Jan 10 09:44 boinc_task_state.xml
[2026-01-10 09:56:21] -rw-r--r--. 1 boincer umatlas      6655 Jan 10 09:55 init_data.xml
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas  45501218 Jan 10 09:55 HITS.47962010._002295.pool.root.1
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas      1043 Jan 10 09:55 memory_monitor_summary.json
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas   1195840 Jan 10 09:55 log.47962010._002295.job.log.tgz.1
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas      8569 Jan 10 09:55 heartbeat.json
[2026-01-10 09:56:21] -rw-r--r--. 1 boincer umatlas        27 Jan 10 09:56 wrapper_checkpoint.txt
[2026-01-10 09:56:21] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 09:56 boinc_mmap_file
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas       822 Jan 10 09:56 pilotlog.txt
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas        95 Jan 10 09:56 pilot_heartbeat.json
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas    655097 Jan 10 09:56 log.47962010._002295.job.log.1
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas       353 Jan 10 09:56 output.list
[2026-01-10 09:56:21] -rw-r--r--. 1 boincer umatlas       620 Jan 10 09:56 runtime_log
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas   1873920 Jan 10 09:56 result.tar.gz
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas       650 Jan 10 09:56 TGWNDmPyny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLomKDmf22zKm.diag
[2026-01-10 09:56:21] -rw-r--r--. 1 boincer umatlas      9337 Jan 10 09:56 runtime_log.err
[2026-01-10 09:56:21] -rw-r--r--. 1 boincer umatlas     21987 Jan 10 09:56 stderr.txt
[2026-01-10 09:56:21] HITS file was successfully produced:
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas 45501218 Jan 10 09:55 shared/HITS.pool.root.1
[2026-01-10 09:56:21]  *** Contents of shared directory: ***
[2026-01-10 09:56:21] total 430128
[2026-01-10 09:56:21] -rw-r--r--. 2 boincer umatlas 392458857 Jan 10 08:39 ATLAS.root_0
[2026-01-10 09:56:21] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:39 start_atlas.sh
[2026-01-10 09:56:21] -rw-r--r--. 2 boincer umatlas    592618 Jan 10 08:39 input.tar.gz
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas  45501218 Jan 10 09:55 HITS.pool.root.1
[2026-01-10 09:56:21] -rw-------. 1 boincer umatlas   1873920 Jan 10 09:56 result.tar.gz
09:56:23 (1350258): run_atlas exited; CPU time 17673.080153
09:56:23 (1350258): called boinc_finish(0)

</stderr_txt>
]]>

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