Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:40:19 (1246663): wrapper (7.7.26015): starting
10:40:19 (1246663): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 10:40:19] Arguments: --nthreads 12
[2026-01-10 10:40:19] Threads: 12
[2026-01-10 10:40:19] Checking for CVMFS
[2026-01-10 10:40:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 10:40:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 10:40:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 10:40:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 10:40:42] 2.13.3.0 9955 94997 164728 154984 0 486 28676913 32935937 17344 16776704 0 462830863 99.728 323701901 33130 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 10:40:42] CVMFS is ok
[2026-01-10 10:40:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 10:40:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 10:40:42] Further information can be found at the LHC@home message board.
[2026-01-10 10:40:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 10:40:42] Checking for apptainer binary...
[2026-01-10 10:40:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 10:40:42] Running /usr/bin/apptainer --version
[2026-01-10 10:40:42] apptainer version 1.4.5-2.el9
[2026-01-10 10:40:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 10:40:43] c-5-1.aglt2.org
[2026-01-10 10:40:43] apptainer works
[2026-01-10 10:40:43] Set ATHENA_PROC_NUMBER=12
[2026-01-10 10:40:43] Set ATHENA_CORE_NUMBER=12
[2026-01-10 10:40:43] Starting ATLAS job with PandaID=6965383987
[2026-01-10 10:40:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 14:05:12]  *** The last 200 lines of the pilot log: ***
[2026-01-10 14:05:12] 2026-01-10 19:04:36,234 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 14:05:12] 2026-01-10 19:04:36,253 | INFO     | time since job start (12175s) is within the limit (349056.0s)
[2026-01-10 14:05:12] 2026-01-10 19:04:38,259 | INFO     | time since job start (12177s) is within the limit (349056.0s)
[2026-01-10 14:05:12] 2026-01-10 19:04:38,347 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 14:05:12] 2026-01-10 19:04:38,354 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8952500000005
[2026-01-10 14:05:12] 2026-01-10 19:04:38,360 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965383987/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 14:05:12] 2026-01-10 19:04:38,362 | INFO     | extracted standard info from prmon json
[2026-01-10 14:05:12] 2026-01-10 19:04:38,362 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 14:05:12] 2026-01-10 19:04:38,362 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 14:05:12] 2026-01-10 19:04:38,366 | INFO     | fitting pss+swap vs Time
[2026-01-10 14:05:12] 2026-01-10 19:04:38,367 | INFO     | sum of square deviations: 2370110155.9695354
[2026-01-10 14:05:12] 2026-01-10 19:04:38,368 | INFO     | sum of deviations: 89189373614.12694
[2026-01-10 14:05:12] 2026-01-10 19:04:38,369 | INFO     | mean x: 1768065862.101523
[2026-01-10 14:05:12] 2026-01-10 19:04:38,369 | INFO     | mean y: 2865940.2436548225
[2026-01-10 14:05:12] 2026-01-10 19:04:38,369 | INFO     | intersect: -66531040237.99016
[2026-01-10 14:05:12] 2026-01-10 19:04:38,369 | INFO     | chi2: 7.822541031202231
[2026-01-10 14:05:12] 2026-01-10 19:04:38,370 | INFO     | sum of square deviations: 2194570502.244802
[2026-01-10 14:05:12] 2026-01-10 19:04:38,371 | INFO     | sum of deviations: 124940756283.88013
[2026-01-10 14:05:12] 2026-01-10 19:04:38,371 | INFO     | mean x: 1768065709.7864583
[2026-01-10 14:05:12] 2026-01-10 19:04:38,371 | INFO     | mean y: 2896778.3385416665
[2026-01-10 14:05:12] 2026-01-10 19:04:38,371 | INFO     | intersect: -100656191965.6119
[2026-01-10 14:05:12] 2026-01-10 19:04:38,372 | INFO     | chi2: 6.62059684272955
[2026-01-10 14:05:12] 2026-01-10 19:04:38,372 | INFO     | current chi2=6.62059684272955 (change=15.36513753879226 %)
[2026-01-10 14:05:12] 2026-01-10 19:04:38,372 | INFO     | right removable region: 191
[2026-01-10 14:05:12] 2026-01-10 19:04:38,372 | INFO     | sum of square deviations: 2193717112.244802
[2026-01-10 14:05:12] 2026-01-10 19:04:38,374 | INFO     | sum of deviations: 13351394418.208303
[2026-01-10 14:05:12] 2026-01-10 19:04:38,374 | INFO     | mean x: 1768066014.7864583
[2026-01-10 14:05:12] 2026-01-10 19:04:38,374 | INFO     | mean y: 2931534.5416666665
[2026-01-10 14:05:12] 2026-01-10 19:04:38,374 | INFO     | intersect: -10757866468.573631
[2026-01-10 14:05:12] 2026-01-10 19:04:38,374 | INFO     | chi2: 3.5419867776990195
[2026-01-10 14:05:12] 2026-01-10 19:04:38,374 | INFO     | current chi2=3.5419867776990195 (change=54.720764473195 %)
[2026-01-10 14:05:12] 2026-01-10 19:04:38,375 | INFO     | sum of square deviations: 2026346254.0427752
[2026-01-10 14:05:12] 2026-01-10 19:04:38,376 | INFO     | sum of deviations: -30809359599.47592
[2026-01-10 14:05:12] 2026-01-10 19:04:38,376 | INFO     | mean x: 1768066167.4385028
[2026-01-10 14:05:12] 2026-01-10 19:04:38,376 | INFO     | mean y: 2971535.871657754
[2026-01-10 14:05:12] 2026-01-10 19:04:38,377 | INFO     | intersect: 26885339857.475468
[2026-01-10 14:05:12] 2026-01-10 19:04:38,377 | INFO     | chi2: 1.8697083404570523
[2026-01-10 14:05:12] 2026-01-10 19:04:38,377 | INFO     | current chi2=1.8697083404570523 (change=47.21300620801101 %)
[2026-01-10 14:05:12] 2026-01-10 19:04:38,377 | INFO     | sum of square deviations: 1868027078.0714238
[2026-01-10 14:05:12] 2026-01-10 19:04:38,379 | INFO     | sum of deviations: -35809880744.57143
[2026-01-10 14:05:12] 2026-01-10 19:04:38,379 | INFO     | mean x: 1768066319.9285715
[2026-01-10 14:05:12] 2026-01-10 19:04:38,379 | INFO     | mean y: 2976346.263736264
[2026-01-10 14:05:12] 2026-01-10 19:04:38,379 | INFO     | intersect: 33896619970.79936
[2026-01-10 14:05:12] 2026-01-10 19:04:38,379 | INFO     | chi2: 1.8371979526603233
[2026-01-10 14:05:12] 2026-01-10 19:04:38,379 | INFO     | current chi2=1.8371979526603233 (change=1.7387946073333442 %)
[2026-01-10 14:05:12] 2026-01-10 19:04:38,380 | INFO     | left removable region: 30
[2026-01-10 14:05:12] 2026-01-10 19:04:38,380 | INFO     | sum of square deviations: 1293163909.279502
[2026-01-10 14:05:12] 2026-01-10 19:04:38,381 | INFO     | sum of deviations: -5455664432.223618
[2026-01-10 14:05:12] 2026-01-10 19:04:38,381 | INFO     | mean x: 1768066594.7080746
[2026-01-10 14:05:12] 2026-01-10 19:04:38,381 | INFO     | mean y: 3029577.633540373
[2026-01-10 14:05:12] 2026-01-10 19:04:38,381 | INFO     | intersect: 7462237157.843474
[2026-01-10 14:05:12] 2026-01-10 19:04:38,382 | INFO     | chi2: 0.5271579834787643
[2026-01-10 14:05:12] 2026-01-10 19:04:38,382 | INFO     | current memory leak: -4.22 B/s (using 161 data points, chi2=0.53)
[2026-01-10 14:05:12] 2026-01-10 19:04:38,382 | INFO     | could have reported an average CPU frequency of 2600 MHz (10 samples)
[2026-01-10 14:05:12] 2026-01-10 19:04:38,383 | INFO     | ..............................
[2026-01-10 14:05:12] 2026-01-10 19:04:38,383 | INFO     | . Timing measurements:
[2026-01-10 14:05:12] 2026-01-10 19:04:38,383 | INFO     | . get job = 0 s
[2026-01-10 14:05:12] 2026-01-10 19:04:38,383 | INFO     | . initial setup = 5 s
[2026-01-10 14:05:12] 2026-01-10 19:04:38,383 | INFO     | . payload setup = 58 s
[2026-01-10 14:05:12] 2026-01-10 19:04:38,383 | INFO     | . stage-in = 0 s
[2026-01-10 14:05:12] 2026-01-10 19:04:38,383 | INFO     | . payload execution = 12029 s
[2026-01-10 14:05:12] 2026-01-10 19:04:38,383 | INFO     | . stage-out = 2 s
[2026-01-10 14:05:12] 2026-01-10 19:04:38,383 | INFO     | . log creation = 0 s
[2026-01-10 14:05:12] 2026-01-10 19:04:38,384 | INFO     | ..............................
[2026-01-10 14:05:12] 2026-01-10 19:04:38,493 | INFO     | 
[2026-01-10 14:05:12] 2026-01-10 19:04:38,494 | INFO     | job summary report
[2026-01-10 14:05:12] 2026-01-10 19:04:38,494 | INFO     | --------------------------------------------------
[2026-01-10 14:05:12] 2026-01-10 19:04:38,494 | INFO     | PanDA job id: 6965383987
[2026-01-10 14:05:12] 2026-01-10 19:04:38,494 | INFO     | task id: 47962010
[2026-01-10 14:05:12] 2026-01-10 19:04:38,494 | INFO     | errors: (none)
[2026-01-10 14:05:12] 2026-01-10 19:04:38,494 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 14:05:12] 2026-01-10 19:04:38,494 | INFO     | pilot state: finished 
[2026-01-10 14:05:12] 2026-01-10 19:04:38,494 | INFO     | transexitcode: 0
[2026-01-10 14:05:12] 2026-01-10 19:04:38,495 | INFO     | exeerrorcode: 0
[2026-01-10 14:05:12] 2026-01-10 19:04:38,495 | INFO     | exeerrordiag: 
[2026-01-10 14:05:12] 2026-01-10 19:04:38,495 | INFO     | exitcode: 0
[2026-01-10 14:05:12] 2026-01-10 19:04:38,495 | INFO     | exitmsg: OK
[2026-01-10 14:05:12] 2026-01-10 19:04:38,495 | INFO     | cpuconsumptiontime: 19283 s
[2026-01-10 14:05:12] 2026-01-10 19:04:38,495 | INFO     | nevents: 50
[2026-01-10 14:05:12] 2026-01-10 19:04:38,495 | INFO     | neventsw: 0
[2026-01-10 14:05:12] 2026-01-10 19:04:38,495 | INFO     | pid: 1264564
[2026-01-10 14:05:12] 2026-01-10 19:04:38,496 | INFO     | pgrp: 1264564
[2026-01-10 14:05:12] 2026-01-10 19:04:38,496 | INFO     | corecount: 12
[2026-01-10 14:05:12] 2026-01-10 19:04:38,496 | INFO     | event service: False
[2026-01-10 14:05:12] 2026-01-10 19:04:38,496 | INFO     | sizes: {0: 2284398, 1: 2284426, 2: 2284625, 13: 2284625, 24: 2284681, 31: 2284971, 35: 2285127, 12091: 2315182, 12094: 2324176, 12097: 2324232, 12102: 2324478}
[2026-01-10 14:05:12] 2026-01-10 19:04:38,496 | INFO     | --------------------------------------------------
[2026-01-10 14:05:12] 2026-01-10 19:04:38,496 | INFO     | 
[2026-01-10 14:05:12] 2026-01-10 19:04:38,496 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 14:05:12] 2026-01-10 19:04:38,518 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,518 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,518 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,519 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,519 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,519 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,519 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,519 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,519 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,519 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,519 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,520 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,520 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,520 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,520 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,520 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,520 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,520 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 14:05:12] 2026-01-10 19:04:38,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,521 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 14:05:12] 2026-01-10 19:04:38,521 | INFO     | job 6965383987 has completed (purged errors)
[2026-01-10 14:05:12] 2026-01-10 19:04:38,521 | INFO     | overall cleanup function is called
[2026-01-10 14:05:12] 2026-01-10 19:04:39,541 | INFO     | --- collectZombieJob: --- 10, [1264564]
[2026-01-10 14:05:12] 2026-01-10 19:04:39,541 | INFO     | zombie collector waiting for pid 1264564
[2026-01-10 14:05:12] 2026-01-10 19:04:39,541 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 14:05:12] 2026-01-10 19:04:39,541 | INFO     | collected zombie processes
[2026-01-10 14:05:12] 2026-01-10 19:04:39,541 | INFO     | will attempt to kill all subprocesses of pid=1264564
[2026-01-10 14:05:12] 2026-01-10 19:04:39,951 | INFO     | process IDs to be killed: [1264564] (in reverse order)
[2026-01-10 14:05:12] 2026-01-10 19:04:40,058 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 14:05:12] 2026-01-10 19:04:40,058 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 14:05:12] 2026-01-10 19:04:40,073 | INFO     | did not find any defunct processes belonging to 1264564
[2026-01-10 14:05:12] 2026-01-10 19:04:40,086 | INFO     | did not find any defunct processes belonging to 1264564
[2026-01-10 14:05:12] 2026-01-10 19:04:40,087 | INFO     | ready for new job
[2026-01-10 14:05:12] 2026-01-10 19:04:40,087 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 14:05:12] 2026-01-10 19:04:40,089 | INFO     | ***************************************
[2026-01-10 14:05:12] 2026-01-10 19:04:40,089 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 14:05:12] 2026-01-10 19:04:40,089 | INFO     | ***************************************
[2026-01-10 14:05:12] 2026-01-10 19:04:40,089 | INFO     | 
[2026-01-10 14:05:12] 2026-01-10 19:04:40,091 | INFO     | architecture information:
[2026-01-10 14:05:12] 2026-01-10 19:04:40,093 | INFO     | executing command: cat /etc/os-release
[2026-01-10 14:05:12] 2026-01-10 19:04:40,108 | INFO     | cat /etc/os-release:
[2026-01-10 14:05:12] NAME="CentOS Linux"
[2026-01-10 14:05:12] VERSION="7 (Core)"
[2026-01-10 14:05:12] ID="centos"
[2026-01-10 14:05:12] ID_LIKE="rhel fedora"
[2026-01-10 14:05:12] VERSION_ID="7"
[2026-01-10 14:05:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 14:05:12] ANSI_COLOR="0;31"
[2026-01-10 14:05:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 14:05:12] HOME_URL="https://www.centos.org/"
[2026-01-10 14:05:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 14:05:12] 
[2026-01-10 14:05:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 14:05:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 14:05:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 14:05:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 14:05:12] 
[2026-01-10 14:05:12] 2026-01-10 19:04:40,108 | INFO     | ***************************************
[2026-01-10 14:05:12] 2026-01-10 19:04:40,611 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 14:05:12] 2026-01-10 19:04:40,631 | INFO     | sufficient remaining disk space (76337381376 B)
[2026-01-10 14:05:12] 2026-01-10 19:04:40,632 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 14:05:12] 2026-01-10 19:04:40,632 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 14:05:12] 2026-01-10 19:04:40,632 | INFO     | update_server=False
[2026-01-10 14:05:12] 2026-01-10 19:04:40,632 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 14:05:12] 2026-01-10 19:04:40,632 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 14:05:12] 2026-01-10 19:04:40,633 | INFO     | aborting loop
[2026-01-10 14:05:12] 2026-01-10 19:04:41,018 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 14:05:12] 2026-01-10 19:04:41,221 | INFO     | all job control threads have been joined
[2026-01-10 14:05:12] 2026-01-10 19:04:41,311 | INFO     | all data control threads have been joined
[2026-01-10 14:05:12] 2026-01-10 19:04:41,637 | INFO     | [job] retrieve thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:04:41,638 | INFO     | [job] job monitor thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:04:41,862 | INFO     | [data] copytool_in thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:04:42,014 | INFO     | all payload control threads have been joined
[2026-01-10 14:05:12] 2026-01-10 19:04:42,059 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:04:42,210 | INFO     | [payload] failed_post thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:04:42,222 | INFO     | [job] validate thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:04:42,226 | INFO     | [job] control thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:04:42,316 | INFO     | [data] control thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:04:42,644 | INFO     | [payload] validate_post thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:04:42,730 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:04:42,864 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:04:42,970 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:04:43,020 | INFO     | [payload] control thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:04:43,023 | INFO     | [data] copytool_out thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:04:43,505 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 14:05:12] 2026-01-10 19:04:44,081 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 14:05:12] 2026-01-10 19:04:44,510 | INFO     | [job] queue monitor thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:04:48,087 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 14:05:12] 2026-01-10 19:05:05,282 | INFO     | [monitor] cgroup control has ended
[2026-01-10 14:05:12] 2026-01-10 19:05:06,295 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140420952467264)>', '<ExcThread(monitor, started 140420281505536)>']
[2026-01-10 14:05:12] 2026-01-10 19:05:11,320 | INFO     | all workflow threads have been joined
[2026-01-10 14:05:12] 2026-01-10 19:05:11,320 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 14:05:12] 2026-01-10 19:05:11,320 | INFO     | traces error code: 0
[2026-01-10 14:05:12] 2026-01-10 19:05:11,320 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 14:05:12] 2026-01-10 19:05:11,781 | INFO     | PID=1253535 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 14:05:12] 2026-01-10 19:05:11,782 | INFO     | .. there are 25 such processes running
[2026-01-10 14:05:12] 2026-01-10 19:05:11,783 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 14:05:12] 2026-01-10 19:05:11,783 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 14:05:12] 2026-01-10 19:05:11,783 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 14:05:12] 2026-01-10 19:05:11,783 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 14:05:12] 2026-01-10 19:05:11,784 | CRITICAL | thread 'MainThread' is not alive
[2026-01-10 14:05:12] 2026-01-10 19:05:11,784 | INFO     | [monitor] control thread has ended
[2026-01-10 14:05:12] 2026-01-10 19:05:12,010 [wrapper] ==== pilot stdout END ====
[2026-01-10 14:05:12] 2026-01-10 19:05:12,014 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 14:05:12] 2026-01-10 19:05:12,016 [wrapper] pilotpid: 1253535
[2026-01-10 14:05:12] 2026-01-10 19:05:12,018 [wrapper] Pilot exit status: 0
[2026-01-10 14:05:12] 2026-01-10 19:05:12,027 [wrapper] pandaids: 6965383987
[2026-01-10 14:05:12] 2026-01-10 19:05:12,100 [wrapper] cleanup supervisor_pilot 1926721 1253536
[2026-01-10 14:05:12] 2026-01-10 19:05:12,104 [wrapper] Test setup, not cleaning
[2026-01-10 14:05:12] 2026-01-10 19:05:12,107 [wrapper] apfmon messages muted
[2026-01-10 14:05:12] 2026-01-10 19:05:12,110 [wrapper] ==== wrapper stdout END ====
[2026-01-10 14:05:12] 2026-01-10 19:05:12,113 [wrapper] ==== wrapper stderr END ====
[2026-01-10 14:05:12]  *** Error codes and diagnostics ***
[2026-01-10 14:05:12]     "exeErrorCode": 0,
[2026-01-10 14:05:12]     "exeErrorDiag": "",
[2026-01-10 14:05:12]     "pilotErrorCode": 0,
[2026-01-10 14:05:12]     "pilotErrorDiag": "",
[2026-01-10 14:05:12]  *** Listing of results directory ***
[2026-01-10 14:05:12] total 434132
[2026-01-10 14:05:12] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:13 queuedata.json
[2026-01-10 14:05:12] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 14:05:12] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 14:05:12] -rw-r--r--. 1 boincer umatlas       100 Jan 10 10:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 14:05:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 10:40 run_atlas
[2026-01-10 14:05:12] -rw-r--r--. 1 boincer umatlas       105 Jan 10 10:40 job.xml
[2026-01-10 14:05:12] -rw-r--r--. 2 boincer umatlas 392203700 Jan 10 10:40 EVNT.47962006._000062.pool.root.1
[2026-01-10 14:05:12] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 10:40 start_atlas.sh
[2026-01-10 14:05:12] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 10:40 shared
[2026-01-10 14:05:12] -rw-r--r--. 2 boincer umatlas    592618 Jan 10 10:40 input.tar.gz
[2026-01-10 14:05:12] -rw-r--r--. 1 boincer umatlas         0 Jan 10 10:40 boinc_lockfile
[2026-01-10 14:05:12] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 10:40 pandaJob.out
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas        57 Jan 10 10:40 setup.sh.local
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas    989556 Jan 10 10:41 agis_schedconf.cvmfs.json
[2026-01-10 14:05:12] drwx------. 5 boincer umatlas      4096 Jan 10 10:41 pilot3
[2026-01-10 14:05:12] -rw-r--r--. 1 boincer umatlas       531 Jan 10 13:30 boinc_task_state.xml
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas  42264971 Jan 10 14:04 HITS.47962010._002128.pool.root.1
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas      1040 Jan 10 14:04 memory_monitor_summary.json
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas   1516240 Jan 10 14:04 agis_ddmendpoints.agis.ALL.json
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas   1694380 Jan 10 14:04 log.47962010._002128.job.log.tgz.1
[2026-01-10 14:05:12] -rw-r--r--. 1 boincer umatlas      6659 Jan 10 14:04 init_data.xml
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas      8577 Jan 10 14:04 heartbeat.json
[2026-01-10 14:05:12] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 14:05 boinc_mmap_file
[2026-01-10 14:05:12] -rw-r--r--. 1 boincer umatlas        28 Jan 10 14:05 wrapper_checkpoint.txt
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas        95 Jan 10 14:05 pilot_heartbeat.json
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas       893 Jan 10 14:05 pilotlog.txt
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas   1393103 Jan 10 14:05 log.47962010._002128.job.log.1
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas       353 Jan 10 14:05 output.list
[2026-01-10 14:05:12] -rw-r--r--. 1 boincer umatlas       620 Jan 10 14:05 runtime_log
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas   3102720 Jan 10 14:05 result.tar.gz
[2026-01-10 14:05:12] -rw-r--r--. 1 boincer umatlas      9330 Jan 10 14:05 runtime_log.err
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas       652 Jan 10 14:05 mW9NDmNyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJYhKDmxKguYn.diag
[2026-01-10 14:05:12] -rw-r--r--. 1 boincer umatlas     21251 Jan 10 14:05 stderr.txt
[2026-01-10 14:05:12] HITS file was successfully produced:
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas 42264971 Jan 10 14:04 shared/HITS.pool.root.1
[2026-01-10 14:05:12]  *** Contents of shared directory: ***
[2026-01-10 14:05:12] total 427916
[2026-01-10 14:05:12] -rw-r--r--. 2 boincer umatlas 392203700 Jan 10 10:40 ATLAS.root_0
[2026-01-10 14:05:12] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 10:40 start_atlas.sh
[2026-01-10 14:05:12] -rw-r--r--. 2 boincer umatlas    592618 Jan 10 10:40 input.tar.gz
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas  42264971 Jan 10 14:04 HITS.pool.root.1
[2026-01-10 14:05:12] -rw-------. 1 boincer umatlas   3102720 Jan 10 14:05 result.tar.gz
14:05:13 (1246663): run_atlas exited; CPU time 19562.715090
14:05:13 (1246663): called boinc_finish(0)

</stderr_txt>
]]>

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