Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:19:43 (576993): wrapper (7.7.26015): starting
08:19:43 (576993): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 08:19:43] Arguments: --nthreads 8
[2026-01-10 08:19:43] Threads: 8
[2026-01-10 08:19:43] Checking for CVMFS
[2026-01-10 08:19:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:19:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:19:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:19:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:19:44] 2.13.3.0 11772 94856 229672 154981 1 69 21616285 32935936 12329 16776704 0 507844893 99.507 668144070 36851 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 08:19:44] CVMFS is ok
[2026-01-10 08:19:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:19:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:19:44] Further information can be found at the LHC@home message board.
[2026-01-10 08:19:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:19:44] Checking for apptainer binary...
[2026-01-10 08:19:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:19:44] Running /usr/bin/apptainer --version
[2026-01-10 08:19:44] apptainer version 1.4.5-2.el9
[2026-01-10 08:19:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:19:44] c7-3-28.aglt2.org
[2026-01-10 08:19:44] apptainer works
[2026-01-10 08:19:44] Set ATHENA_PROC_NUMBER=8
[2026-01-10 08:19:44] Set ATHENA_CORE_NUMBER=8
[2026-01-10 08:19:45] Starting ATLAS job with PandaID=6965383993
[2026-01-10 08:19:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 09:24:35]  *** The last 200 lines of the pilot log: ***
[2026-01-10 09:24:35]  replicas=None
[2026-01-10 09:24:35]  scope=mc16_13TeV
[2026-01-10 09:24:35]  status=None
[2026-01-10 09:24:35]  status_code=0
[2026-01-10 09:24:35]  storage_token=
[2026-01-10 09:24:35]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6965383993/log.47962010._002134.job.log.tgz.1
[2026-01-10 09:24:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/06/99/log.47962010._002134.job.log.tgz.1
[2026-01-10 09:24:35]  workdir=None
[2026-01-10 09:24:35] ]
[2026-01-10 09:24:35] 2026-01-10 14:23:53,099 | INFO     | transferring file log.47962010._002134.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6965383993/log.47962010._002134.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 09:24:35] 2026-01-10 14:23:53,099 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6965383993/log.47962010._002134.job.log.tgz.1 /tmp/boinchome/slots/4/log.47962010._002134.job
[2026-01-10 09:24:35] 2026-01-10 14:23:53,119 | INFO     | adding to output.list: log.47962010._002134.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/06/99/log.47962010._002134.job.log.tgz.
[2026-01-10 09:24:35] 2026-01-10 14:23:53,120 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 09:24:35] 2026-01-10 14:23:53,120 | INFO     | summary of transferred files:
[2026-01-10 09:24:35] 2026-01-10 14:23:53,120 | INFO     |  -- lfn=log.47962010._002134.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 09:24:35] 2026-01-10 14:23:53,120 | INFO     | stage-out finished correctly
[2026-01-10 09:24:35] 2026-01-10 14:23:53,479 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 09:24:35] 2026-01-10 14:23:54,820 | INFO     | job 6965383993 has state=finished
[2026-01-10 09:24:35] 2026-01-10 14:23:54,820 | INFO     | preparing for final server update for job 6965383993 in state='finished'
[2026-01-10 09:24:35] 2026-01-10 14:23:54,821 | INFO     | this job has now completed (state=finished)
[2026-01-10 09:24:35] 2026-01-10 14:23:54,821 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 09:24:35] 2026-01-10 14:23:54,821 | INFO     | log transfer has been attempted: DONE
[2026-01-10 09:24:35] 2026-01-10 14:23:54,821 | INFO     | job 6965383993 has finished - writing final server update
[2026-01-10 09:24:35] 2026-01-10 14:23:54,821 | INFO     | total number of processed events: 50 (read)
[2026-01-10 09:24:35] 2026-01-10 14:23:54,822 | INFO     | executing command: lscpu
[2026-01-10 09:24:35] 2026-01-10 14:23:54,895 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 09:24:35] 2026-01-10 14:23:54,996 | INFO     | time since job start (3811s) is within the limit (349056.0s)
[2026-01-10 09:24:35] 2026-01-10 14:23:56,825 | WARNING  | process 627751 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 09:24:35] 2026-01-10 14:23:56,825 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6965383993/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 09:24:35] 2026-01-10 14:23:57,003 | INFO     | time since job start (3814s) is within the limit (349056.0s)
[2026-01-10 09:24:35] 2026-01-10 14:23:57,456 | INFO     | number of running child processes to parent process 627751: 1
[2026-01-10 09:24:35] 2026-01-10 14:23:57,456 | INFO     | maximum number of monitored processes: 16
[2026-01-10 09:24:35] 2026-01-10 14:23:59,011 | INFO     | time since job start (3816s) is within the limit (349056.0s)
[2026-01-10 09:24:35] 2026-01-10 14:23:59,961 | INFO     | monitor loop #244: job 0:6965383993 is in state 'finished'
[2026-01-10 09:24:35] 2026-01-10 14:23:59,961 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:24:35] 2026-01-10 14:24:01,018 | INFO     | time since job start (3818s) is within the limit (349056.0s)
[2026-01-10 09:24:35] 2026-01-10 14:24:01,975 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 09:24:35] 2026-01-10 14:24:02,001 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3209.456499999999
[2026-01-10 09:24:35] 2026-01-10 14:24:02,018 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6965383993/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 09:24:35] 2026-01-10 14:24:02,018 | INFO     | extracted standard info from prmon json
[2026-01-10 09:24:35] 2026-01-10 14:24:02,018 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 09:24:35] 2026-01-10 14:24:02,018 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 09:24:35] 2026-01-10 14:24:02,020 | INFO     | fitting pss+swap vs Time
[2026-01-10 09:24:35] 2026-01-10 14:24:02,020 | INFO     | sum of square deviations: 51564715.381818205
[2026-01-10 09:24:35] 2026-01-10 14:24:02,020 | INFO     | sum of deviations: -6003640638.436363
[2026-01-10 09:24:35] 2026-01-10 14:24:02,020 | INFO     | mean x: 1768053246.7818182
[2026-01-10 09:24:35] 2026-01-10 14:24:02,020 | INFO     | mean y: 2403173.963636364
[2026-01-10 09:24:35] 2026-01-10 14:24:02,020 | INFO     | intersect: 205855499515.1384
[2026-01-10 09:24:35] 2026-01-10 14:24:02,020 | INFO     | chi2: 2.10849655456522
[2026-01-10 09:24:35] 2026-01-10 14:24:02,021 | INFO     | current memory leak: -116.43 B/s (using 55 data points, chi2=2.11)
[2026-01-10 09:24:35] 2026-01-10 14:24:02,021 | INFO     | could have reported an average CPU frequency of 3234 MHz (6 samples)
[2026-01-10 09:24:35] 2026-01-10 14:24:02,021 | INFO     | ..............................
[2026-01-10 09:24:35] 2026-01-10 14:24:02,021 | INFO     | . Timing measurements:
[2026-01-10 09:24:35] 2026-01-10 14:24:02,021 | INFO     | . get job = 0 s
[2026-01-10 09:24:35] 2026-01-10 14:24:02,021 | INFO     | . initial setup = 3 s
[2026-01-10 09:24:35] 2026-01-10 14:24:02,021 | INFO     | . payload setup = 19 s
[2026-01-10 09:24:35] 2026-01-10 14:24:02,021 | INFO     | . stage-in = 0 s
[2026-01-10 09:24:35] 2026-01-10 14:24:02,021 | INFO     | . payload execution = 3750 s
[2026-01-10 09:24:35] 2026-01-10 14:24:02,021 | INFO     | . stage-out = 0 s
[2026-01-10 09:24:35] 2026-01-10 14:24:02,021 | INFO     | . log creation = 0 s
[2026-01-10 09:24:35] 2026-01-10 14:24:02,021 | INFO     | ..............................
[2026-01-10 09:24:35] 2026-01-10 14:24:02,103 | INFO     | 
[2026-01-10 09:24:35] 2026-01-10 14:24:02,108 | INFO     | job summary report
[2026-01-10 09:24:35] 2026-01-10 14:24:02,116 | INFO     | --------------------------------------------------
[2026-01-10 09:24:35] 2026-01-10 14:24:02,120 | INFO     | PanDA job id: 6965383993
[2026-01-10 09:24:35] 2026-01-10 14:24:02,120 | INFO     | task id: 47962010
[2026-01-10 09:24:35] 2026-01-10 14:24:02,120 | INFO     | errors: (none)
[2026-01-10 09:24:35] 2026-01-10 14:24:02,120 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 09:24:35] 2026-01-10 14:24:02,120 | INFO     | pilot state: finished 
[2026-01-10 09:24:35] 2026-01-10 14:24:02,120 | INFO     | transexitcode: 0
[2026-01-10 09:24:35] 2026-01-10 14:24:02,120 | INFO     | exeerrorcode: 0
[2026-01-10 09:24:35] 2026-01-10 14:24:02,120 | INFO     | exeerrordiag: 
[2026-01-10 09:24:35] 2026-01-10 14:24:02,120 | INFO     | exitcode: 0
[2026-01-10 09:24:35] 2026-01-10 14:24:02,120 | INFO     | exitmsg: OK
[2026-01-10 09:24:35] 2026-01-10 14:24:02,120 | INFO     | cpuconsumptiontime: 12142 s
[2026-01-10 09:24:35] 2026-01-10 14:24:02,120 | INFO     | nevents: 50
[2026-01-10 09:24:35] 2026-01-10 14:24:02,120 | INFO     | neventsw: 0
[2026-01-10 09:24:35] 2026-01-10 14:24:02,120 | INFO     | pid: 627751
[2026-01-10 09:24:35] 2026-01-10 14:24:02,121 | INFO     | pgrp: 627751
[2026-01-10 09:24:35] 2026-01-10 14:24:02,121 | INFO     | corecount: 8
[2026-01-10 09:24:35] 2026-01-10 14:24:02,121 | INFO     | event service: False
[2026-01-10 09:24:35] 2026-01-10 14:24:02,121 | INFO     | sizes: {0: 2284398, 1: 2284597, 12: 2284597, 13: 2284887, 22: 2284943, 3774: 2311577, 3775: 2320571, 3776: 2320627, 3784: 2320873}
[2026-01-10 09:24:35] 2026-01-10 14:24:02,121 | INFO     | --------------------------------------------------
[2026-01-10 09:24:35] 2026-01-10 14:24:02,121 | INFO     | 
[2026-01-10 09:24:35] 2026-01-10 14:24:02,121 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-10 09:24:35] 2026-01-10 14:24:02,158 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,158 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,158 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,158 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,158 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,158 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,158 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,158 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,158 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,158 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,159 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,159 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,159 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,159 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,159 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,159 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,159 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,159 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 09:24:35] 2026-01-10 14:24:02,159 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,159 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 09:24:35] 2026-01-10 14:24:02,159 | INFO     | job 6965383993 has completed (purged errors)
[2026-01-10 09:24:35] 2026-01-10 14:24:02,159 | INFO     | overall cleanup function is called
[2026-01-10 09:24:35] 2026-01-10 14:24:02,843 | INFO     | PID=598910 has CPU usage=15.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 09:24:35] 2026-01-10 14:24:02,843 | INFO     | .. there are 19 such processes running
[2026-01-10 09:24:35] 2026-01-10 14:24:03,255 | INFO     | --- collectZombieJob: --- 10, [627751]
[2026-01-10 09:24:35] 2026-01-10 14:24:03,255 | INFO     | zombie collector waiting for pid 627751
[2026-01-10 09:24:35] 2026-01-10 14:24:03,255 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 09:24:35] 2026-01-10 14:24:03,255 | INFO     | collected zombie processes
[2026-01-10 09:24:35] 2026-01-10 14:24:03,255 | INFO     | will attempt to kill all subprocesses of pid=627751
[2026-01-10 09:24:35] 2026-01-10 14:24:03,827 | INFO     | process IDs to be killed: [627751] (in reverse order)
[2026-01-10 09:24:35] 2026-01-10 14:24:04,024 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 09:24:35] 2026-01-10 14:24:04,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 09:24:35] 2026-01-10 14:24:04,065 | INFO     | did not find any defunct processes belonging to 627751
[2026-01-10 09:24:35] 2026-01-10 14:24:04,100 | INFO     | did not find any defunct processes belonging to 627751
[2026-01-10 09:24:35] 2026-01-10 14:24:04,100 | INFO     | ready for new job
[2026-01-10 09:24:35] 2026-01-10 14:24:04,100 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 09:24:35] 2026-01-10 14:24:04,105 | INFO     | ***************************************
[2026-01-10 09:24:35] 2026-01-10 14:24:04,105 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 09:24:35] 2026-01-10 14:24:04,105 | INFO     | ***************************************
[2026-01-10 09:24:35] 2026-01-10 14:24:04,105 | INFO     | 
[2026-01-10 09:24:35] 2026-01-10 14:24:04,114 | INFO     | architecture information:
[2026-01-10 09:24:35] 2026-01-10 14:24:04,114 | INFO     | executing command: cat /etc/os-release
[2026-01-10 09:24:35] 2026-01-10 14:24:04,138 | INFO     | cat /etc/os-release:
[2026-01-10 09:24:35] NAME="CentOS Linux"
[2026-01-10 09:24:35] VERSION="7 (Core)"
[2026-01-10 09:24:35] ID="centos"
[2026-01-10 09:24:35] ID_LIKE="rhel fedora"
[2026-01-10 09:24:35] VERSION_ID="7"
[2026-01-10 09:24:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 09:24:35] ANSI_COLOR="0;31"
[2026-01-10 09:24:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 09:24:35] HOME_URL="https://www.centos.org/"
[2026-01-10 09:24:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 09:24:35] 
[2026-01-10 09:24:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 09:24:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 09:24:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 09:24:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 09:24:35] 
[2026-01-10 09:24:35] 2026-01-10 14:24:04,139 | INFO     | ***************************************
[2026-01-10 09:24:35] 2026-01-10 14:24:04,643 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-10 09:24:35] 2026-01-10 14:24:04,660 | INFO     | sufficient remaining disk space (72034025472 B)
[2026-01-10 09:24:35] 2026-01-10 14:24:04,660 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 09:24:35] 2026-01-10 14:24:04,660 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 09:24:35] 2026-01-10 14:24:04,660 | INFO     | update_server=False
[2026-01-10 09:24:35] 2026-01-10 14:24:04,660 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 09:24:35] 2026-01-10 14:24:04,661 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 09:24:35] 2026-01-10 14:24:04,661 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 09:24:35] 2026-01-10 14:24:04,891 | INFO     | all data control threads have been joined
[2026-01-10 09:24:35] 2026-01-10 14:24:04,975 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 09:24:35] 2026-01-10 14:24:04,975 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 09:24:35] 2026-01-10 14:24:04,975 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:24:35] 2026-01-10 14:24:04,975 | INFO     | will abort loop
[2026-01-10 09:24:35] 2026-01-10 14:24:05,447 | INFO     | all payload control threads have been joined
[2026-01-10 09:24:35] 2026-01-10 14:24:05,665 | INFO     | [job] retrieve thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:05,719 | INFO     | [payload] validate_post thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:05,897 | INFO     | [data] control thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:05,981 | INFO     | [data] copytool_in thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:05,985 | INFO     | [job] job monitor thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:06,134 | INFO     | [job] validate thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:06,180 | INFO     | [payload] failed_post thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:06,189 | INFO     | all job control threads have been joined
[2026-01-10 09:24:35] 2026-01-10 14:24:06,225 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:06,225 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:06,391 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:06,452 | INFO     | [payload] control thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:06,671 | INFO     | [data] copytool_out thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:07,115 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:24:35] 2026-01-10 14:24:07,124 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:07,195 | INFO     | [job] control thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:08,121 | INFO     | [job] queue monitor thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:08,670 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 09:24:35] 2026-01-10 14:24:29,727 | INFO     | [monitor] cgroup control has ended
[2026-01-10 09:24:35] 2026-01-10 14:24:29,884 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140514103396160)>', '<ExcThread(monitor, started 140513462179584)>']
[2026-01-10 09:24:35] 2026-01-10 14:24:34,912 | INFO     | all workflow threads have been joined
[2026-01-10 09:24:35] 2026-01-10 14:24:34,914 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 09:24:35] 2026-01-10 14:24:34,916 | INFO     | traces error code: 0
[2026-01-10 09:24:35] 2026-01-10 14:24:34,924 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 09:24:35] 2026-01-10 14:24:35,554 | INFO     | PID=598910 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 09:24:35] 2026-01-10 14:24:35,554 | INFO     | .. there are 18 such processes running
[2026-01-10 09:24:35] 2026-01-10 14:24:35,555 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 09:24:35] 2026-01-10 14:24:35,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 09:24:35] 2026-01-10 14:24:35,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 09:24:35] 2026-01-10 14:24:35,555 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 09:24:35] 2026-01-10 14:24:35,556 | INFO     | [monitor] control thread has ended
[2026-01-10 09:24:35] 2026-01-10 14:24:35,687 [wrapper] ==== pilot stdout END ====
[2026-01-10 09:24:35] 2026-01-10 14:24:35,690 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 09:24:35] 2026-01-10 14:24:35,693 [wrapper] pilotpid: 598910
[2026-01-10 09:24:35] 2026-01-10 14:24:35,695 [wrapper] Pilot exit status: 0
[2026-01-10 09:24:35] 2026-01-10 14:24:35,710 [wrapper] pandaids: 6965383993
[2026-01-10 09:24:35] 2026-01-10 14:24:35,816 [wrapper] cleanup supervisor_pilot 1017050 598912
[2026-01-10 09:24:35] 2026-01-10 14:24:35,821 [wrapper] Test setup, not cleaning
[2026-01-10 09:24:35] 2026-01-10 14:24:35,824 [wrapper] apfmon messages muted
[2026-01-10 09:24:35] 2026-01-10 14:24:35,827 [wrapper] ==== wrapper stdout END ====
[2026-01-10 09:24:35] 2026-01-10 14:24:35,830 [wrapper] ==== wrapper stderr END ====
[2026-01-10 09:24:35]  *** Error codes and diagnostics ***
[2026-01-10 09:24:35]     "exeErrorCode": 0,
[2026-01-10 09:24:35]     "exeErrorDiag": "",
[2026-01-10 09:24:35]     "pilotErrorCode": 0,
[2026-01-10 09:24:35]     "pilotErrorDiag": "",
[2026-01-10 09:24:35]  *** Listing of results directory ***
[2026-01-10 09:24:35] total 432800
[2026-01-10 09:24:35] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:13 queuedata.json
[2026-01-10 09:24:35] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 09:24:35] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 09:24:35] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 09:24:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:19 run_atlas
[2026-01-10 09:24:35] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:19 job.xml
[2026-01-10 09:24:35] -rw-r--r--. 2 boincer umatlas 392203700 Jan 10 08:19 EVNT.47962006._000062.pool.root.1
[2026-01-10 09:24:35] -rw-r--r--. 2 boincer umatlas    592621 Jan 10 08:19 input.tar.gz
[2026-01-10 09:24:35] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:19 start_atlas.sh
[2026-01-10 09:24:35] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:19 shared
[2026-01-10 09:24:35] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:19 boinc_lockfile
[2026-01-10 09:24:35] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 08:19 pandaJob.out
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas        57 Jan 10 08:19 setup.sh.local
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas    989556 Jan 10 08:20 agis_schedconf.cvmfs.json
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas   1516240 Jan 10 08:20 agis_ddmendpoints.agis.ALL.json
[2026-01-10 09:24:35] drwx------. 5 boincer umatlas      4096 Jan 10 08:20 pilot3
[2026-01-10 09:24:35] -rw-r--r--. 1 boincer umatlas       530 Jan 10 09:13 boinc_task_state.xml
[2026-01-10 09:24:35] -rw-r--r--. 1 boincer umatlas      6943 Jan 10 09:22 init_data.xml
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas  43648292 Jan 10 09:23 HITS.47962010._002134.pool.root.1
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas      1038 Jan 10 09:23 memory_monitor_summary.json
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas   1173639 Jan 10 09:23 log.47962010._002134.job.log.tgz.1
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas      8537 Jan 10 09:24 heartbeat.json
[2026-01-10 09:24:35] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 09:24 boinc_mmap_file
[2026-01-10 09:24:35] -rw-r--r--. 1 boincer umatlas        27 Jan 10 09:24 wrapper_checkpoint.txt
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas       822 Jan 10 09:24 pilotlog.txt
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas        95 Jan 10 09:24 pilot_heartbeat.json
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas    534245 Jan 10 09:24 log.47962010._002134.job.log.1
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas       353 Jan 10 09:24 output.list
[2026-01-10 09:24:35] -rw-r--r--. 1 boincer umatlas       620 Jan 10 09:24 runtime_log
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas   1730560 Jan 10 09:24 result.tar.gz
[2026-01-10 09:24:35] -rw-r--r--. 1 boincer umatlas      9337 Jan 10 09:24 runtime_log.err
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas       652 Jan 10 09:24 hIGODmNyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMYhKDmkAXQdm.diag
[2026-01-10 09:24:35] -rw-r--r--. 1 boincer umatlas     22044 Jan 10 09:24 stderr.txt
[2026-01-10 09:24:35] HITS file was successfully produced:
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas 43648292 Jan 10 09:23 shared/HITS.pool.root.1
[2026-01-10 09:24:35]  *** Contents of shared directory: ***
[2026-01-10 09:24:35] total 427932
[2026-01-10 09:24:35] -rw-r--r--. 2 boincer umatlas 392203700 Jan 10 08:19 ATLAS.root_0
[2026-01-10 09:24:35] -rw-r--r--. 2 boincer umatlas    592621 Jan 10 08:19 input.tar.gz
[2026-01-10 09:24:35] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:19 start_atlas.sh
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas  43648292 Jan 10 09:23 HITS.pool.root.1
[2026-01-10 09:24:35] -rw-------. 1 boincer umatlas   1730560 Jan 10 09:24 result.tar.gz
09:24:37 (576993): run_atlas exited; CPU time 12135.458795
09:24:37 (576993): called boinc_finish(0)

</stderr_txt>
]]>

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