Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
09:25:01 (564093): wrapper (7.7.26015): starting
09:25:01 (564093): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 09:25:01] Arguments: --nthreads 4
[2026-01-11 09:25:01] Threads: 4
[2026-01-11 09:25:01] Checking for CVMFS
[2026-01-11 09:25:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 09:25:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 09:25:02] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 09:25:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 09:25:02] 2.13.3.0 1712136 5469 59056 155010 3 131 3101745 4194304 1471 130560 41 8236422 99.930 950445 265 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-11 09:25:02] CVMFS is ok
[2026-01-11 09:25:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 09:25:02] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-11 09:25:02] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-11 09:25:02] Further information can be found at the LHC@home message board.
[2026-01-11 09:25:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 09:25:02] Checking for apptainer binary...
[2026-01-11 09:25:02] apptainer is not installed, using version from CVMFS
[2026-01-11 09:25:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 09:25:02] Ryze
[2026-01-11 09:25:02] apptainer works
[2026-01-11 09:25:02] Set ATHENA_PROC_NUMBER=4
[2026-01-11 09:25:02] Set ATHENA_CORE_NUMBER=4
[2026-01-11 09:25:02] Starting ATLAS job with PandaID=6965383975
[2026-01-11 09:25:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 10:02:17]  *** The last 200 lines of the pilot log: ***
[2026-01-11 10:02:17]  lfn=log.47962010._002116.job.log.tgz.1
[2026-01-11 10:02:17]  mtime=0
[2026-01-11 10:02:17]  protocol_id=None
[2026-01-11 10:02:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-11 10:02:17]  replicas=None
[2026-01-11 10:02:17]  scope=mc16_13TeV
[2026-01-11 10:02:17]  status=None
[2026-01-11 10:02:17]  status_code=0
[2026-01-11 10:02:17]  storage_token=
[2026-01-11 10:02:17]  surl=/var/lib/boinc-client/slots/4/PanDA_Pilot-6965383975/log.47962010._002116.job.log.tgz.1
[2026-01-11 10:02:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/78/88/log.47962010._002116.job.log.tgz.1
[2026-01-11 10:02:17]  workdir=None
[2026-01-11 10:02:17] ]
[2026-01-11 10:02:17] 2026-01-11 09:01:28,161 | INFO     | transferring file log.47962010._002116.job.log.tgz.1 from /var/lib/boinc-client/slots/4/PanDA_Pilot-6965383975/log.47962010._002116.job.log.tgz.1 to /var/lib/boinc
[2026-01-11 10:02:17] 2026-01-11 09:01:28,161 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/4/PanDA_Pilot-6965383975/log.47962010._002116.job.log.tgz.1 /var/lib/boinc-client/slots/4/log.479620
[2026-01-11 10:02:17] 2026-01-11 09:01:28,180 | INFO     | adding to output.list: log.47962010._002116.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/78/88/log.47962010._002116.job.log.tgz.
[2026-01-11 10:02:17] 2026-01-11 09:01:28,181 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 10:02:17] 2026-01-11 09:01:28,181 | INFO     | summary of transferred files:
[2026-01-11 10:02:17] 2026-01-11 09:01:28,181 | INFO     |  -- lfn=log.47962010._002116.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 10:02:17] 2026-01-11 09:01:28,181 | INFO     | stage-out finished correctly
[2026-01-11 10:02:17] 2026-01-11 09:01:29,178 | INFO     | time since job start (2180s) is within the limit (349056.0s)
[2026-01-11 10:02:17] 2026-01-11 09:01:29,178 | INFO     | 2181s have passed since pilot start - server update state is 'RUNNING'
[2026-01-11 10:02:17] 2026-01-11 09:01:30,246 | WARNING  | process 574489 can no longer be monitored (due to stat problems) - aborting
[2026-01-11 10:02:17] 2026-01-11 09:01:30,247 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6965383975/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 10:02:17] 2026-01-11 09:01:30,369 | INFO     | number of running child processes to parent process 574489: 1
[2026-01-11 10:02:17] 2026-01-11 09:01:30,369 | INFO     | maximum number of monitored processes: 10
[2026-01-11 10:02:17] 2026-01-11 09:01:30,973 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 10:02:17] 2026-01-11 09:01:31,036 | INFO     | job 6965383975 has state=finished
[2026-01-11 10:02:17] 2026-01-11 09:01:31,036 | INFO     | preparing for final server update for job 6965383975 in state='finished'
[2026-01-11 10:02:17] 2026-01-11 09:01:31,036 | INFO     | this job has now completed (state=finished)
[2026-01-11 10:02:17] 2026-01-11 09:01:31,037 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 10:02:17] 2026-01-11 09:01:31,037 | INFO     | log transfer has been attempted: DONE
[2026-01-11 10:02:17] 2026-01-11 09:01:31,037 | INFO     | job 6965383975 has finished - writing final server update
[2026-01-11 10:02:17] 2026-01-11 09:01:31,037 | INFO     | total number of processed events: 50 (read)
[2026-01-11 10:02:17] 2026-01-11 09:01:31,038 | INFO     | executing command: lscpu
[2026-01-11 10:02:17] 2026-01-11 09:01:31,064 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 10:02:17] 2026-01-11 09:01:31,184 | INFO     | time since job start (2182s) is within the limit (349056.0s)
[2026-01-11 10:02:17] 2026-01-11 09:01:32,872 | INFO     | monitor loop #169: job 0:6965383975 is in state 'finished'
[2026-01-11 10:02:17] 2026-01-11 09:01:32,873 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 10:02:17] 2026-01-11 09:01:33,188 | INFO     | time since job start (2184s) is within the limit (349056.0s)
[2026-01-11 10:02:17] 2026-01-11 09:01:33,936 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 10:02:17] 2026-01-11 09:01:33,939 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3743.6018333333336
[2026-01-11 10:02:17] 2026-01-11 09:01:33,942 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6965383975/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 10:02:17] 2026-01-11 09:01:33,943 | INFO     | extracted standard info from prmon json
[2026-01-11 10:02:17] 2026-01-11 09:01:33,943 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 10:02:17] 2026-01-11 09:01:33,943 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 10:02:17] 2026-01-11 09:01:33,944 | INFO     | fitting pss+swap vs Time
[2026-01-11 10:02:17] 2026-01-11 09:01:33,944 | INFO     | sum of square deviations: 7553630.0
[2026-01-11 10:02:17] 2026-01-11 09:01:33,944 | INFO     | sum of deviations: 384417425.0
[2026-01-11 10:02:17] 2026-01-11 09:01:33,944 | INFO     | mean x: 1768121090.0
[2026-01-11 10:02:17] 2026-01-11 09:01:33,944 | INFO     | mean y: 2193793.4482758623
[2026-01-11 10:02:17] 2026-01-11 09:01:33,944 | INFO     | intersect: -89980576941.41605
[2026-01-11 10:02:17] 2026-01-11 09:01:33,944 | INFO     | chi2: 0.005188315446783966
[2026-01-11 10:02:17] 2026-01-11 09:01:33,945 | INFO     | current memory leak: 50.89 B/s (using 29 data points, chi2=0.01)
[2026-01-11 10:02:17] 2026-01-11 09:01:33,945 | INFO     | could have reported an average CPU frequency of 3706 MHz (5 samples)
[2026-01-11 10:02:17] 2026-01-11 09:01:33,945 | INFO     | ..............................
[2026-01-11 10:02:17] 2026-01-11 09:01:33,945 | INFO     | . Timing measurements:
[2026-01-11 10:02:17] 2026-01-11 09:01:33,945 | INFO     | . get job = 0 s
[2026-01-11 10:02:17] 2026-01-11 09:01:33,945 | INFO     | . initial setup = 1 s
[2026-01-11 10:02:17] 2026-01-11 09:01:33,945 | INFO     | . payload setup = 4 s
[2026-01-11 10:02:17] 2026-01-11 09:01:33,945 | INFO     | . stage-in = 0 s
[2026-01-11 10:02:17] 2026-01-11 09:01:33,945 | INFO     | . payload execution = 2156 s
[2026-01-11 10:02:17] 2026-01-11 09:01:33,945 | INFO     | . stage-out = 0 s
[2026-01-11 10:02:17] 2026-01-11 09:01:33,945 | INFO     | . log creation = 0 s
[2026-01-11 10:02:17] 2026-01-11 09:01:33,945 | INFO     | ..............................
[2026-01-11 10:02:17] 2026-01-11 09:01:34,091 | INFO     | 
[2026-01-11 10:02:17] 2026-01-11 09:01:34,091 | INFO     | job summary report
[2026-01-11 10:02:17] 2026-01-11 09:01:34,091 | INFO     | --------------------------------------------------
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | PanDA job id: 6965383975
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | task id: 47962010
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | errors: (none)
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | pilot state: finished 
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | transexitcode: 0
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | exeerrorcode: 0
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | exeerrordiag: 
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | exitcode: 0
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | exitmsg: OK
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | cpuconsumptiontime: 7735 s
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | nevents: 50
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | neventsw: 0
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | pid: 574489
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | pgrp: 574489
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | corecount: 4
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | event service: False
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | sizes: {0: 2284462, 1: 2284604, 3: 2284866, 11: 2284894, 2164: 2310750, 2165: 2319758, 2168: 2319942, 2171: 2320220}
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | --------------------------------------------------
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | 
[2026-01-11 10:02:17] 2026-01-11 09:01:34,092 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2026-01-11 10:02:17] 2026-01-11 09:01:34,113 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | job 6965383975 has completed (purged errors)
[2026-01-11 10:02:17] 2026-01-11 09:01:34,114 | INFO     | overall cleanup function is called
[2026-01-11 10:02:17] 2026-01-11 09:01:35,124 | INFO     | --- collectZombieJob: --- 10, [574489]
[2026-01-11 10:02:17] 2026-01-11 09:01:35,124 | INFO     | zombie collector waiting for pid 574489
[2026-01-11 10:02:17] 2026-01-11 09:01:35,124 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 10:02:17] 2026-01-11 09:01:35,125 | INFO     | collected zombie processes
[2026-01-11 10:02:17] 2026-01-11 09:01:35,125 | INFO     | will attempt to kill all subprocesses of pid=574489
[2026-01-11 10:02:17] 2026-01-11 09:01:35,223 | INFO     | process IDs to be killed: [574489] (in reverse order)
[2026-01-11 10:02:17] 2026-01-11 09:01:35,277 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 10:02:17] 2026-01-11 09:01:35,277 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 10:02:17] 2026-01-11 09:01:35,281 | INFO     | did not find any defunct processes belonging to 574489
[2026-01-11 10:02:17] 2026-01-11 09:01:35,284 | INFO     | did not find any defunct processes belonging to 574489
[2026-01-11 10:02:17] 2026-01-11 09:01:35,284 | INFO     | ready for new job
[2026-01-11 10:02:17] 2026-01-11 09:01:35,284 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 10:02:17] 2026-01-11 09:01:35,285 | INFO     | ***************************************
[2026-01-11 10:02:17] 2026-01-11 09:01:35,285 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 10:02:17] 2026-01-11 09:01:35,285 | INFO     | ***************************************
[2026-01-11 10:02:17] 2026-01-11 09:01:35,285 | INFO     | 
[2026-01-11 10:02:17] 2026-01-11 09:01:35,286 | INFO     | architecture information:
[2026-01-11 10:02:17] 2026-01-11 09:01:35,286 | INFO     | executing command: cat /etc/os-release
[2026-01-11 10:02:17] 2026-01-11 09:01:35,300 | INFO     | cat /etc/os-release:
[2026-01-11 10:02:17] NAME="CentOS Linux"
[2026-01-11 10:02:17] VERSION="7 (Core)"
[2026-01-11 10:02:17] ID="centos"
[2026-01-11 10:02:17] ID_LIKE="rhel fedora"
[2026-01-11 10:02:17] VERSION_ID="7"
[2026-01-11 10:02:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 10:02:17] ANSI_COLOR="0;31"
[2026-01-11 10:02:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 10:02:17] HOME_URL="https://www.centos.org/"
[2026-01-11 10:02:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 10:02:17] 
[2026-01-11 10:02:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 10:02:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 10:02:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 10:02:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 10:02:17] 
[2026-01-11 10:02:17] 2026-01-11 09:01:35,301 | INFO     | ***************************************
[2026-01-11 10:02:17] 2026-01-11 09:01:35,802 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2026-01-11 10:02:17] 2026-01-11 09:01:35,819 | INFO     | sufficient remaining disk space (3072950534144 B)
[2026-01-11 10:02:17] 2026-01-11 09:01:35,820 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 10:02:17] 2026-01-11 09:01:35,820 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 10:02:17] 2026-01-11 09:01:35,820 | INFO     | update_server=False
[2026-01-11 10:02:17] 2026-01-11 09:01:35,820 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 10:02:17] 2026-01-11 09:01:35,820 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 10:02:17] 2026-01-11 09:01:36,256 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 10:02:17] 2026-01-11 09:01:36,352 | INFO     | all payload control threads have been joined
[2026-01-11 10:02:17] 2026-01-11 09:01:36,380 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 10:02:17] 2026-01-11 09:01:36,380 | INFO     | aborting loop
[2026-01-11 10:02:17] 2026-01-11 09:01:36,413 | INFO     | all data control threads have been joined
[2026-01-11 10:02:17] 2026-01-11 09:01:36,716 | INFO     | all job control threads have been joined
[2026-01-11 10:02:17] 2026-01-11 09:01:36,825 | INFO     | [job] retrieve thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:01:36,826 | INFO     | [job] queue monitor thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:01:36,909 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:01:37,040 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 10:02:17] 2026-01-11 09:01:37,358 | INFO     | [payload] control thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:01:37,385 | INFO     | [job] job monitor thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:01:37,415 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:01:37,418 | INFO     | [data] control thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:01:37,721 | INFO     | [job] control thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:01:37,903 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:01:38,046 | INFO     | [job] validate thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:01:38,081 | INFO     | [payload] validate_post thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:01:38,231 | INFO     | [payload] failed_post thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:01:38,249 | INFO     | [data] copytool_in thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:01:38,262 | INFO     | [data] copytool_out thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:01:38,266 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:01:41,046 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 10:02:17] 2026-01-11 09:02:06,357 | INFO     | PID=567899 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 10:02:17] 2026-01-11 09:02:06,357 | INFO     | .. there are 3 such processes running
[2026-01-11 10:02:17] 2026-01-11 09:02:06,358 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 10:02:17] 2026-01-11 09:02:06,358 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 10:02:17] 2026-01-11 09:02:06,358 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 10:02:17] 2026-01-11 09:02:12,295 | INFO     | [monitor] cgroup control has ended
[2026-01-11 10:02:17] 2026-01-11 09:02:12,477 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138218210170688)>', '<ExcThread(monitor, started 138217667942144)>']
[2026-01-11 10:02:17] 2026-01-11 09:02:13,392 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 10:02:17] 2026-01-11 09:02:13,392 | INFO     | [monitor] control thread has ended
[2026-01-11 10:02:17] 2026-01-11 09:02:17,502 | INFO     | all workflow threads have been joined
[2026-01-11 10:02:17] 2026-01-11 09:02:17,502 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 10:02:17] 2026-01-11 09:02:17,503 | INFO     | traces error code: 0
[2026-01-11 10:02:17] 2026-01-11 09:02:17,503 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 10:02:17] 2026-01-11 09:02:17,586 [wrapper] ==== pilot stdout END ====
[2026-01-11 10:02:17] 2026-01-11 09:02:17,589 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 10:02:17] 2026-01-11 09:02:17,590 [wrapper] pilotpid: 567899
[2026-01-11 10:02:17] 2026-01-11 09:02:17,592 [wrapper] Pilot exit status: 0
[2026-01-11 10:02:17] 2026-01-11 09:02:17,600 [wrapper] pandaids: 6965383975
[2026-01-11 10:02:17] 2026-01-11 09:02:17,632 [wrapper] cleanup supervisor_pilot  624865 567900
[2026-01-11 10:02:17] 2026-01-11 09:02:17,634 [wrapper] Test setup, not cleaning
[2026-01-11 10:02:17] 2026-01-11 09:02:17,637 [wrapper] apfmon messages muted
[2026-01-11 10:02:17] 2026-01-11 09:02:17,639 [wrapper] ==== wrapper stdout END ====
[2026-01-11 10:02:17] 2026-01-11 09:02:17,641 [wrapper] ==== wrapper stderr END ====
[2026-01-11 10:02:17]  *** Error codes and diagnostics ***
[2026-01-11 10:02:17]     "exeErrorCode": 0,
[2026-01-11 10:02:17]     "exeErrorDiag": "",
[2026-01-11 10:02:17]     "pilotErrorCode": 0,
[2026-01-11 10:02:17]     "pilotErrorDiag": "",
[2026-01-11 10:02:17]  *** Listing of results directory ***
[2026-01-11 10:02:17] insgesamt 435800
[2026-01-11 10:02:17] -rw-r--r-- 1 boinc boinc      5112 Jan 10 14:13 queuedata.json
[2026-01-11 10:02:17] -rw-r--r-- 1 boinc boinc    579449 Jan 10 14:14 pilot3.tar.gz
[2026-01-11 10:02:17] -rwx------ 1 boinc boinc     36322 Jan 10 14:14 runpilot2-wrapper.sh
[2026-01-11 10:02:17] -rw-r--r-- 1 boinc boinc       100 Jan 11 09:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 10:02:17] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 09:25 run_atlas
[2026-01-11 10:02:17] -rw-r--r-- 1 boinc boinc       105 Jan 11 09:25 job.xml
[2026-01-11 10:02:17] -rw-r--r-- 2 boinc boinc 394320947 Jan 11 09:25 EVNT.47962006._000059.pool.root.1
[2026-01-11 10:02:17] -rw-r--r-- 2 boinc boinc    592616 Jan 11 09:25 input.tar.gz
[2026-01-11 10:02:17] -rw-r--r-- 2 boinc boinc     15847 Jan 11 09:25 start_atlas.sh
[2026-01-11 10:02:17] drwxrwx--x 2 boinc boinc      4096 Jan 11 09:25 shared
[2026-01-11 10:02:17] -rw-r--r-- 1 boinc boinc         0 Jan 11 09:25 boinc_setup_complete
[2026-01-11 10:02:17] -rw-r--r-- 1 boinc boinc      8869 Jan 11 09:25 init_data.xml
[2026-01-11 10:02:17] -rw-r--r-- 1 boinc boinc         0 Jan 11 09:25 boinc_lockfile
[2026-01-11 10:02:17] -rw-r--r-- 1 boinc boinc      2890 Jan 11 09:25 pandaJob.out
[2026-01-11 10:02:17] -rw------- 1 boinc boinc    989548 Jan 11 09:25 agis_schedconf.cvmfs.json
[2026-01-11 10:02:17] -rw------- 1 boinc boinc   1516240 Jan 11 09:25 agis_ddmendpoints.agis.ALL.json
[2026-01-11 10:02:17] drwx------ 5 boinc boinc      4096 Jan 11 09:25 pilot3
[2026-01-11 10:02:17] -rw-r--r-- 1 boinc boinc       528 Jan 11 09:58 boinc_task_state.xml
[2026-01-11 10:02:17] -rw------- 1 boinc boinc  45849314 Jan 11 10:01 HITS.47962010._002116.pool.root.1
[2026-01-11 10:02:17] -rw------- 1 boinc boinc      1012 Jan 11 10:01 memory_monitor_summary.json
[2026-01-11 10:02:17] -rw------- 1 boinc boinc    724778 Jan 11 10:01 log.47962010._002116.job.log.tgz.1
[2026-01-11 10:02:17] -rw------- 1 boinc boinc        95 Jan 11 10:01 pilot_heartbeat.json
[2026-01-11 10:02:17] -rw------- 1 boinc boinc      8495 Jan 11 10:01 heartbeat.json
[2026-01-11 10:02:17] -rw-r--r-- 1 boinc boinc      8192 Jan 11 10:02 boinc_mmap_file
[2026-01-11 10:02:17] -rw-r--r-- 1 boinc boinc        26 Jan 11 10:02 wrapper_checkpoint.txt
[2026-01-11 10:02:17] -rw------- 1 boinc boinc      4831 Jan 11 10:02 pilotlog.txt
[2026-01-11 10:02:17] -rw------- 1 boinc boinc    364044 Jan 11 10:02 log.47962010._002116.job.log.1
[2026-01-11 10:02:17] -rw------- 1 boinc boinc       353 Jan 11 10:02 output.list
[2026-01-11 10:02:17] -rw-r--r-- 1 boinc boinc       620 Jan 11 10:02 runtime_log
[2026-01-11 10:02:17] -rw------- 1 boinc boinc   1105920 Jan 11 10:02 result.tar.gz
[2026-01-11 10:02:17] -rw------- 1 boinc boinc       633 Jan 11 10:02 UnuNDmNyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDYhKDmw5uwsm.diag
[2026-01-11 10:02:17] -rw-r--r-- 1 boinc boinc      8859 Jan 11 10:02 runtime_log.err
[2026-01-11 10:02:17] -rw-r--r-- 1 boinc boinc     21860 Jan 11 10:02 stderr.txt
[2026-01-11 10:02:17] HITS file was successfully produced:
[2026-01-11 10:02:17] -rw------- 1 boinc boinc 45849314 Jan 11 10:01 shared/HITS.pool.root.1
[2026-01-11 10:02:17]  *** Contents of shared directory: ***
[2026-01-11 10:02:17] insgesamt 431536
[2026-01-11 10:02:17] -rw-r--r-- 2 boinc boinc 394320947 Jan 11 09:25 ATLAS.root_0
[2026-01-11 10:02:17] -rw-r--r-- 2 boinc boinc    592616 Jan 11 09:25 input.tar.gz
[2026-01-11 10:02:17] -rw-r--r-- 2 boinc boinc     15847 Jan 11 09:25 start_atlas.sh
[2026-01-11 10:02:17] -rw------- 1 boinc boinc  45849314 Jan 11 10:01 HITS.pool.root.1
[2026-01-11 10:02:17] -rw------- 1 boinc boinc   1105920 Jan 11 10:02 result.tar.gz
10:02:18 (564093): run_atlas exited; CPU time 7714.726584
10:02:18 (564093): called boinc_finish(0)

</stderr_txt>
]]>

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