Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:02:37 (1829330): wrapper (7.7.26015): starting
03:02:37 (1829330): wrapper: running run_atlas (--nthreads 12)
[2026-01-11 03:02:37] Arguments: --nthreads 12
[2026-01-11 03:02:37] Threads: 12
[2026-01-11 03:02:37] Checking for CVMFS
[2026-01-11 03:02:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 03:02:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 03:02:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 03:02:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 03:02:37] 2.13.3.0 4294 4839 114488 154999 1 188 38986776 46080001 922 130560 0 10291499 99.996 179038 929 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-01-11 03:02:37] CVMFS is ok
[2026-01-11 03:02:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 03:02:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 03:02:37] Further information can be found at the LHC@home message board.
[2026-01-11 03:02:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 03:02:37] Checking for apptainer binary...
[2026-01-11 03:02:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 03:02:37] Running /usr/bin/apptainer --version
[2026-01-11 03:02:37] apptainer version 1.4.5-2.el9
[2026-01-11 03:02:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 03:02:37] gpu01.farm.particle.cz
[2026-01-11 03:02:37] apptainer works
[2026-01-11 03:02:37] Set ATHENA_PROC_NUMBER=12
[2026-01-11 03:02:37] Set ATHENA_CORE_NUMBER=12
[2026-01-11 03:02:37] Starting ATLAS job with PandaID=6965382588
[2026-01-11 03:02:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 03:59:14]  *** The last 200 lines of the pilot log: ***
[2026-01-11 03:59:14] 2026-01-11 02:58:35,730 | INFO     | adding to output.list: log.47898826._040164.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ac/29/log.47898826._040164.job.log.tg
[2026-01-11 03:59:14] 2026-01-11 02:58:35,731 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 03:59:14] 2026-01-11 02:58:35,731 | INFO     | summary of transferred files:
[2026-01-11 03:59:14] 2026-01-11 02:58:35,731 | INFO     |  -- lfn=log.47898826._040164.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 03:59:14] 2026-01-11 02:58:35,731 | INFO     | stage-out finished correctly
[2026-01-11 03:59:14] 2026-01-11 02:58:37,278 | INFO     | time since job start (3352s) is within the limit (349056.0s)
[2026-01-11 03:59:14] 2026-01-11 02:58:38,026 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 03:59:14] 2026-01-11 02:58:39,280 | INFO     | time since job start (3354s) is within the limit (349056.0s)
[2026-01-11 03:59:14] 2026-01-11 02:58:40,391 | INFO     | PID=1833199 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 03:59:14] 2026-01-11 02:58:40,391 | INFO     | .. there are 2 such processes running
[2026-01-11 03:59:14] 2026-01-11 02:58:40,454 | INFO     | job 6965382588 has state=finished
[2026-01-11 03:59:14] 2026-01-11 02:58:40,454 | INFO     | preparing for final server update for job 6965382588 in state='finished'
[2026-01-11 03:59:14] 2026-01-11 02:58:40,455 | INFO     | this job has now completed (state=finished)
[2026-01-11 03:59:14] 2026-01-11 02:58:40,455 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 03:59:14] 2026-01-11 02:58:40,455 | INFO     | log transfer has been attempted: DONE
[2026-01-11 03:59:14] 2026-01-11 02:58:40,455 | INFO     | job 6965382588 has finished - writing final server update
[2026-01-11 03:59:14] 2026-01-11 02:58:40,455 | INFO     | total number of processed events: 400 (read)
[2026-01-11 03:59:14] 2026-01-11 02:58:40,455 | INFO     | executing command: lscpu
[2026-01-11 03:59:14] 2026-01-11 02:58:40,480 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 03:59:14] 2026-01-11 02:58:41,392 | INFO     | time since job start (3356s) is within the limit (349056.0s)
[2026-01-11 03:59:14] 2026-01-11 02:58:41,862 | WARNING  | process 1839900 can no longer be monitored (due to stat problems) - aborting
[2026-01-11 03:59:14] 2026-01-11 02:58:41,862 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6965382588/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 03:59:14] 2026-01-11 02:58:41,862 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6965382588/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 03:59:14] 2026-01-11 02:58:41,863 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-11 03:59:14] 2026-01-11 02:58:41,863 | WARNING  | maxPSS not found in memory monitor output
[2026-01-11 03:59:14] 2026-01-11 02:58:41,863 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4679630 B
[2026-01-11 03:59:14] 2026-01-11 02:58:41,863 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16080 B
[2026-01-11 03:59:14] 2026-01-11 02:58:41,863 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-01-11 03:59:14] 2026-01-11 02:58:43,139 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 03:59:14] 2026-01-11 02:58:43,146 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3221.818437500001
[2026-01-11 03:59:14] 2026-01-11 02:58:43,150 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6965382588/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 03:59:14] 2026-01-11 02:58:43,150 | INFO     | extracted standard info from prmon json
[2026-01-11 03:59:14] 2026-01-11 02:58:43,150 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 03:59:14] 2026-01-11 02:58:43,150 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 03:59:14] 2026-01-11 02:58:43,151 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 03:59:14] 2026-01-11 02:58:43,151 | INFO     | sufficient remaining disk space (41832939520 B)
[2026-01-11 03:59:14] 2026-01-11 02:58:43,151 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 03:59:14] 2026-01-11 02:58:43,151 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-11 03:59:14] 2026-01-11 02:58:43,152 | INFO     | fitting pss+swap vs Time
[2026-01-11 03:59:14] 2026-01-11 02:58:43,152 | INFO     | sum of square deviations: 34277852.0
[2026-01-11 03:59:14] 2026-01-11 02:58:43,153 | INFO     | sum of deviations: -1416038414.5
[2026-01-11 03:59:14] 2026-01-11 02:58:43,153 | INFO     | mean x: 1768098724.5
[2026-01-11 03:59:14] 2026-01-11 02:58:43,153 | INFO     | mean y: 2748026.5625
[2026-01-11 03:59:14] 2026-01-11 02:58:43,153 | INFO     | intersect: 73043955933.06879
[2026-01-11 03:59:14] 2026-01-11 02:58:43,153 | INFO     | chi2: 0.017490030027046792
[2026-01-11 03:59:14] 2026-01-11 02:58:43,153 | INFO     | current memory leak: -41.31 B/s (using 48 data points, chi2=0.02)
[2026-01-11 03:59:14] 2026-01-11 02:58:43,154 | INFO     | size of work directory /var/lib/boinc/slots/0/PanDA_Pilot-6965382588: 4968399 B (within 4404019200 B limit)
[2026-01-11 03:59:14] 2026-01-11 02:58:43,154 | INFO     | could have reported an average CPU frequency of 3230 MHz (5 samples)
[2026-01-11 03:59:14] 2026-01-11 02:58:43,154 | INFO     | pfn file=/var/lib/boinc/slots/0/PanDA_Pilot-6965382588/HITS.47898826._040164.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-11 03:59:14] 2026-01-11 02:58:43,154 | INFO     | ..............................
[2026-01-11 03:59:14] 2026-01-11 02:58:43,154 | INFO     | total size of present files: 0 B (workdir size: 4968399 B)
[2026-01-11 03:59:14] 2026-01-11 02:58:43,154 | INFO     | . Timing measurements:
[2026-01-11 03:59:14] 2026-01-11 02:58:43,154 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/0/PanDA_Pilot-6965382588/HITS.47898826._040164.pool.root.1 since it does not exist
[2026-01-11 03:59:14] 2026-01-11 02:58:43,154 | INFO     | . get job = 0 s
[2026-01-11 03:59:14] 2026-01-11 02:58:43,155 | INFO     | . initial setup = 2 s
[2026-01-11 03:59:14] 2026-01-11 02:58:43,155 | INFO     | . payload setup = 3 s
[2026-01-11 03:59:14] 2026-01-11 02:58:43,155 | INFO     | . stage-in = 0 s
[2026-01-11 03:59:14] 2026-01-11 02:58:43,155 | INFO     | . payload execution = 3328 s
[2026-01-11 03:59:14] 2026-01-11 02:58:43,155 | INFO     | . stage-out = 0 s
[2026-01-11 03:59:14] 2026-01-11 02:58:43,155 | INFO     | . log creation = 0 s
[2026-01-11 03:59:14] 2026-01-11 02:58:43,155 | INFO     | ..............................
[2026-01-11 03:59:14] 2026-01-11 02:58:43,208 | INFO     | 
[2026-01-11 03:59:14] 2026-01-11 02:58:43,208 | INFO     | job summary report
[2026-01-11 03:59:14] 2026-01-11 02:58:43,208 | INFO     | --------------------------------------------------
[2026-01-11 03:59:14] 2026-01-11 02:58:43,209 | INFO     | PanDA job id: 6965382588
[2026-01-11 03:59:14] 2026-01-11 02:58:43,209 | INFO     | task id: 47898826
[2026-01-11 03:59:14] 2026-01-11 02:58:43,209 | INFO     | errors: (none)
[2026-01-11 03:59:14] 2026-01-11 02:58:43,209 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 03:59:14] 2026-01-11 02:58:43,209 | INFO     | pilot state: finished 
[2026-01-11 03:59:14] 2026-01-11 02:58:43,209 | INFO     | transexitcode: 0
[2026-01-11 03:59:14] 2026-01-11 02:58:43,209 | INFO     | exeerrorcode: 0
[2026-01-11 03:59:14] 2026-01-11 02:58:43,210 | INFO     | exeerrordiag: 
[2026-01-11 03:59:14] 2026-01-11 02:58:43,210 | INFO     | exitcode: 0
[2026-01-11 03:59:14] 2026-01-11 02:58:43,210 | INFO     | exitmsg: OK
[2026-01-11 03:59:14] 2026-01-11 02:58:43,210 | INFO     | cpuconsumptiontime: 36798 s
[2026-01-11 03:59:14] 2026-01-11 02:58:43,210 | INFO     | nevents: 400
[2026-01-11 03:59:14] 2026-01-11 02:58:43,210 | INFO     | neventsw: 0
[2026-01-11 03:59:14] 2026-01-11 02:58:43,210 | INFO     | pid: 1839900
[2026-01-11 03:59:14] 2026-01-11 02:58:43,210 | INFO     | pgrp: 1839900
[2026-01-11 03:59:14] 2026-01-11 02:58:43,211 | INFO     | corecount: 12
[2026-01-11 03:59:14] 2026-01-11 02:58:43,211 | INFO     | event service: False
[2026-01-11 03:59:14] 2026-01-11 02:58:43,211 | INFO     | sizes: {0: 2283691, 1: 2283946, 4: 2284208, 11: 2284236, 3336: 2309904, 3337: 2318902, 3339: 2319086, 3344: 2319340}
[2026-01-11 03:59:14] 2026-01-11 02:58:43,211 | INFO     | --------------------------------------------------
[2026-01-11 03:59:14] 2026-01-11 02:58:43,211 | INFO     | 
[2026-01-11 03:59:14] 2026-01-11 02:58:43,211 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-01-11 03:59:14] 2026-01-11 02:58:43,226 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,226 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,227 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,227 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,227 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,227 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,227 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,227 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,227 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,228 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,228 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,228 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,228 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,228 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,228 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,228 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,229 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,229 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 03:59:14] 2026-01-11 02:58:43,229 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,229 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 03:59:14] 2026-01-11 02:58:43,229 | INFO     | job 6965382588 has completed (purged errors)
[2026-01-11 03:59:14] 2026-01-11 02:58:43,229 | INFO     | overall cleanup function is called
[2026-01-11 03:59:14] 2026-01-11 02:58:43,306 | INFO     | number of running child processes to parent process 1839900: 1
[2026-01-11 03:59:14] 2026-01-11 02:58:43,306 | INFO     | maximum number of monitored processes: 6
[2026-01-11 03:59:14] 2026-01-11 02:58:43,306 | INFO     | aborting job monitoring since job object (job id=6965382588) has expired
[2026-01-11 03:59:14] 2026-01-11 02:58:44,238 | INFO     | --- collectZombieJob: --- 10, [1839900]
[2026-01-11 03:59:14] 2026-01-11 02:58:44,239 | INFO     | zombie collector waiting for pid 1839900
[2026-01-11 03:59:14] 2026-01-11 02:58:44,239 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 03:59:14] 2026-01-11 02:58:44,239 | INFO     | collected zombie processes
[2026-01-11 03:59:14] 2026-01-11 02:58:44,239 | INFO     | will attempt to kill all subprocesses of pid=1839900
[2026-01-11 03:59:14] 2026-01-11 02:58:44,326 | INFO     | process IDs to be killed: [1839900] (in reverse order)
[2026-01-11 03:59:14] 2026-01-11 02:58:44,363 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 03:59:14] 2026-01-11 02:58:44,363 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 03:59:14] 2026-01-11 02:58:44,367 | INFO     | did not find any defunct processes belonging to 1839900
[2026-01-11 03:59:14] 2026-01-11 02:58:44,369 | INFO     | did not find any defunct processes belonging to 1839900
[2026-01-11 03:59:14] 2026-01-11 02:58:44,369 | INFO     | ready for new job
[2026-01-11 03:59:14] 2026-01-11 02:58:44,369 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 03:59:14] 2026-01-11 02:58:44,370 | INFO     | ***************************************
[2026-01-11 03:59:14] 2026-01-11 02:58:44,370 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 03:59:14] 2026-01-11 02:58:44,370 | INFO     | ***************************************
[2026-01-11 03:59:14] 2026-01-11 02:58:44,370 | INFO     | 
[2026-01-11 03:59:14] 2026-01-11 02:58:44,372 | INFO     | architecture information:
[2026-01-11 03:59:14] 2026-01-11 02:58:44,372 | INFO     | executing command: cat /etc/os-release
[2026-01-11 03:59:14] 2026-01-11 02:58:44,383 | INFO     | cat /etc/os-release:
[2026-01-11 03:59:14] NAME="CentOS Linux"
[2026-01-11 03:59:14] VERSION="7 (Core)"
[2026-01-11 03:59:14] ID="centos"
[2026-01-11 03:59:14] ID_LIKE="rhel fedora"
[2026-01-11 03:59:14] VERSION_ID="7"
[2026-01-11 03:59:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 03:59:14] ANSI_COLOR="0;31"
[2026-01-11 03:59:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 03:59:14] HOME_URL="https://www.centos.org/"
[2026-01-11 03:59:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 03:59:14] 
[2026-01-11 03:59:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 03:59:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 03:59:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 03:59:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 03:59:14] 
[2026-01-11 03:59:14] 2026-01-11 02:58:44,383 | INFO     | ***************************************
[2026-01-11 03:59:14] 2026-01-11 02:58:44,886 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-01-11 03:59:14] 2026-01-11 02:58:44,899 | INFO     | sufficient remaining disk space (41838182400 B)
[2026-01-11 03:59:14] 2026-01-11 02:58:44,899 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 03:59:14] 2026-01-11 02:58:44,900 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 03:59:14] 2026-01-11 02:58:44,900 | INFO     | update_server=False
[2026-01-11 03:59:14] 2026-01-11 02:58:44,900 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 03:59:14] 2026-01-11 02:58:44,900 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 03:59:14] 2026-01-11 02:58:44,900 | INFO     | aborting loop
[2026-01-11 03:59:14] 2026-01-11 02:58:44,900 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 03:59:14] 2026-01-11 02:58:44,900 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 03:59:14] 2026-01-11 02:58:45,905 | INFO     | [job] retrieve thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:45,906 | INFO     | [job] job monitor thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:45,906 | INFO     | [job] queue monitor thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:45,938 | INFO     | all data control threads have been joined
[2026-01-11 03:59:14] 2026-01-11 02:58:46,036 | INFO     | all job control threads have been joined
[2026-01-11 03:59:14] 2026-01-11 02:58:46,120 | INFO     | all payload control threads have been joined
[2026-01-11 03:59:14] 2026-01-11 02:58:46,276 | INFO     | [payload] failed_post thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:46,295 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 03:59:14] 2026-01-11 02:58:46,382 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:46,614 | INFO     | [data] copytool_in thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:46,645 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:46,674 | INFO     | [job] validate thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:46,857 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:46,943 | INFO     | [data] control thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:47,041 | INFO     | [job] control thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:47,126 | INFO     | [payload] control thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:47,154 | INFO     | [payload] validate_post thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:48,301 | INFO     | [data] copytool_out thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:48,906 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:49,704 | INFO     | [monitor] cgroup control has ended
[2026-01-11 03:59:14] 2026-01-11 02:58:55,826 | INFO     | job.realtimelogging is not enabled
[2026-01-11 03:59:14] 2026-01-11 02:58:56,831 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 03:59:14] 2026-01-11 02:58:58,871 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139652534048576)>', '<ExcThread(monitor, started 139652170233600)>']
[2026-01-11 03:59:14] 2026-01-11 02:59:03,897 | INFO     | all workflow threads have been joined
[2026-01-11 03:59:14] 2026-01-11 02:59:03,897 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 03:59:14] 2026-01-11 02:59:03,897 | INFO     | traces error code: 0
[2026-01-11 03:59:14] 2026-01-11 02:59:03,897 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 03:59:14] 2026-01-11 02:59:14,571 | INFO     | PID=1833199 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 03:59:14] 2026-01-11 02:59:14,571 | INFO     | .. there are 2 such processes running
[2026-01-11 03:59:14] 2026-01-11 02:59:14,571 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 03:59:14] 2026-01-11 02:59:14,572 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 03:59:14] 2026-01-11 02:59:14,572 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 03:59:14] 2026-01-11 02:59:14,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 03:59:14] 2026-01-11 02:59:14,572 | INFO     | [monitor] control thread has ended
[2026-01-11 03:59:14] 2026-01-11 02:59:14,638 [wrapper] ==== pilot stdout END ====
[2026-01-11 03:59:14] 2026-01-11 02:59:14,640 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 03:59:14] 2026-01-11 02:59:14,642 [wrapper] pilotpid: 1833199
[2026-01-11 03:59:14] 2026-01-11 02:59:14,644 [wrapper] Pilot exit status: 0
[2026-01-11 03:59:14] 2026-01-11 02:59:14,651 [wrapper] pandaids: 6965382588
[2026-01-11 03:59:14] 2026-01-11 02:59:14,676 [wrapper] cleanup supervisor_pilot 1894921 1833200
[2026-01-11 03:59:14] 2026-01-11 02:59:14,678 [wrapper] Test setup, not cleaning
[2026-01-11 03:59:14] 2026-01-11 02:59:14,680 [wrapper] apfmon messages muted
[2026-01-11 03:59:14] 2026-01-11 02:59:14,682 [wrapper] ==== wrapper stdout END ====
[2026-01-11 03:59:14] 2026-01-11 02:59:14,684 [wrapper] ==== wrapper stderr END ====
[2026-01-11 03:59:14]  *** Error codes and diagnostics ***
[2026-01-11 03:59:14]     "exeErrorCode": 0,
[2026-01-11 03:59:14]     "exeErrorDiag": "",
[2026-01-11 03:59:14]     "pilotErrorCode": 0,
[2026-01-11 03:59:14]     "pilotErrorDiag": "",
[2026-01-11 03:59:14]  *** Listing of results directory ***
[2026-01-11 03:59:14] total 439460
[2026-01-11 03:59:14] -rw-r--r-- 1 boinc boinc      5112 Jan 10 14:09 queuedata.json
[2026-01-11 03:59:14] -rw-r--r-- 1 boinc boinc    579449 Jan 10 14:09 pilot3.tar.gz
[2026-01-11 03:59:14] -rwx------ 1 boinc boinc     36322 Jan 10 14:10 runpilot2-wrapper.sh
[2026-01-11 03:59:14] -rw-r--r-- 1 boinc boinc       100 Jan 11 03:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 03:59:14] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 03:02 run_atlas
[2026-01-11 03:59:14] -rw-r--r-- 1 boinc boinc       105 Jan 11 03:02 job.xml
[2026-01-11 03:59:14] -rw-r--r-- 1 boinc boinc      9456 Jan 11 03:02 init_data.xml
[2026-01-11 03:59:14] -rw-r--r-- 2 boinc boinc 225693201 Jan 11 03:02 EVNT.47898824._000611.pool.root.1
[2026-01-11 03:59:14] -rw-r--r-- 2 boinc boinc     15847 Jan 11 03:02 start_atlas.sh
[2026-01-11 03:59:14] drwxrwx--x 2 boinc boinc      4096 Jan 11 03:02 shared
[2026-01-11 03:59:14] -rw-r--r-- 2 boinc boinc    592407 Jan 11 03:02 input.tar.gz
[2026-01-11 03:59:14] -rw-r--r-- 1 boinc boinc         0 Jan 11 03:02 boinc_lockfile
[2026-01-11 03:59:14] -rw-r--r-- 1 boinc boinc      2518 Jan 11 03:02 pandaJob.out
[2026-01-11 03:59:14] -rw------- 1 boinc boinc    989545 Jan 11 03:02 agis_schedconf.cvmfs.json
[2026-01-11 03:59:14] -rw------- 1 boinc boinc   1516240 Jan 11 03:02 agis_ddmendpoints.agis.ALL.json
[2026-01-11 03:59:14] drwx------ 5 boinc boinc      4096 Jan 11 03:02 pilot3
[2026-01-11 03:59:14] -rw------- 1 boinc boinc 218595077 Jan 11 03:58 HITS.47898826._040164.pool.root.1
[2026-01-11 03:59:14] -rw------- 1 boinc boinc        95 Jan 11 03:58 pilot_heartbeat.json
[2026-01-11 03:59:14] -rw-r--r-- 1 boinc boinc       529 Jan 11 03:58 boinc_task_state.xml
[2026-01-11 03:59:14] -rw------- 1 boinc boinc      1014 Jan 11 03:58 memory_monitor_summary.json
[2026-01-11 03:59:14] -rw------- 1 boinc boinc    385559 Jan 11 03:58 log.47898826._040164.job.log.tgz.1
[2026-01-11 03:59:14] -rw------- 1 boinc boinc      7767 Jan 11 03:58 heartbeat.json
[2026-01-11 03:59:14] -rw-r--r-- 1 boinc boinc      8192 Jan 11 03:58 boinc_mmap_file
[2026-01-11 03:59:14] -rw-r--r-- 1 boinc boinc        27 Jan 11 03:58 wrapper_checkpoint.txt
[2026-01-11 03:59:14] -rw------- 1 boinc boinc       822 Jan 11 03:59 pilotlog.txt
[2026-01-11 03:59:14] -rw------- 1 boinc boinc    516430 Jan 11 03:59 log.47898826._040164.job.log.1
[2026-01-11 03:59:14] -rw------- 1 boinc boinc       357 Jan 11 03:59 output.list
[2026-01-11 03:59:14] -rw-r--r-- 1 boinc boinc       620 Jan 11 03:59 runtime_log
[2026-01-11 03:59:14] -rw------- 1 boinc boinc    921600 Jan 11 03:59 result.tar.gz
[2026-01-11 03:59:14] -rw-r--r-- 1 boinc boinc      8854 Jan 11 03:59 runtime_log.err
[2026-01-11 03:59:14] -rw------- 1 boinc boinc       658 Jan 11 03:59 dnCMDmTuny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3imKDmmDuaEo.diag
[2026-01-11 03:59:14] -rw-r--r-- 1 boinc boinc     22665 Jan 11 03:59 stderr.txt
[2026-01-11 03:59:14] HITS file was successfully produced:
[2026-01-11 03:59:14] -rw------- 1 boinc boinc 218595077 Jan 11 03:58 shared/HITS.pool.root.1
[2026-01-11 03:59:14]  *** Contents of shared directory: ***
[2026-01-11 03:59:14] total 435380
[2026-01-11 03:59:14] -rw-r--r-- 2 boinc boinc 225693201 Jan 11 03:02 ATLAS.root_0
[2026-01-11 03:59:14] -rw-r--r-- 2 boinc boinc     15847 Jan 11 03:02 start_atlas.sh
[2026-01-11 03:59:14] -rw-r--r-- 2 boinc boinc    592407 Jan 11 03:02 input.tar.gz
[2026-01-11 03:59:14] -rw------- 1 boinc boinc 218595077 Jan 11 03:58 HITS.pool.root.1
[2026-01-11 03:59:14] -rw------- 1 boinc boinc    921600 Jan 11 03:59 result.tar.gz
03:59:15 (1829330): run_atlas exited; CPU time 36832.221537
03:59:15 (1829330): called boinc_finish(0)

</stderr_txt>
]]>

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