Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
08:18:33 (562614): wrapper (7.7.26015): starting
08:18:33 (562614): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 08:18:33] Arguments: --nthreads 4
[2026-01-11 08:18:33] Threads: 4
[2026-01-11 08:18:33] Checking for CVMFS
[2026-01-11 08:18:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 08:18:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 08:18:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 08:18:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 08:18:34] 2.12.7.0 11818 324 55356 155009 0 122 3976641 6144000 3692 130560 0 1458949 99.990 16762 667 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-11 08:18:34] CVMFS is ok
[2026-01-11 08:18:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 08:18:34] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-11 08:18:34] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-11 08:18:34] Further information can be found at the LHC@home message board.
[2026-01-11 08:18:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 08:18:34] Checking for apptainer binary...
[2026-01-11 08:18:34] apptainer is not installed, using version from CVMFS
[2026-01-11 08:18:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 08:18:34] biggy
[2026-01-11 08:18:34] apptainer works
[2026-01-11 08:18:34] Set ATHENA_PROC_NUMBER=4
[2026-01-11 08:18:34] Set ATHENA_CORE_NUMBER=4
[2026-01-11 08:18:34] Starting ATLAS job with PandaID=6965384113
[2026-01-11 08:18:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/single_8TB/boinc-client/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 08:45:56]  *** The last 200 lines of the pilot log: ***
[2026-01-11 08:45:56]  mtime=0
[2026-01-11 08:45:56]  protocol_id=None
[2026-01-11 08:45:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-11 08:45:56]  replicas=None
[2026-01-11 08:45:56]  scope=mc16_13TeV
[2026-01-11 08:45:56]  status=None
[2026-01-11 08:45:56]  status_code=0
[2026-01-11 08:45:56]  storage_token=
[2026-01-11 08:45:56]  surl=/single_8TB/boinc-client/slots/9/PanDA_Pilot-6965384113/log.47962010._002254.job.log.tgz.1
[2026-01-11 08:45:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/83/b5/log.47962010._002254.job.log.tgz.1
[2026-01-11 08:45:56]  workdir=None
[2026-01-11 08:45:56] ]
[2026-01-11 08:45:56] 2026-01-11 07:45:19,022 | INFO     | transferring file log.47962010._002254.job.log.tgz.1 from /single_8TB/boinc-client/slots/9/PanDA_Pilot-6965384113/log.47962010._002254.job.log.tgz.1 to /single_8TB
[2026-01-11 08:45:56] 2026-01-11 07:45:19,022 | INFO     | executing command: /usr/bin/env mv /single_8TB/boinc-client/slots/9/PanDA_Pilot-6965384113/log.47962010._002254.job.log.tgz.1 /single_8TB/boinc-client/slots/9/log.
[2026-01-11 08:45:56] 2026-01-11 07:45:19,031 | INFO     | adding to output.list: log.47962010._002254.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/83/b5/log.47962010._002254.job.log.tgz.
[2026-01-11 08:45:56] 2026-01-11 07:45:19,032 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 08:45:56] 2026-01-11 07:45:19,032 | INFO     | summary of transferred files:
[2026-01-11 08:45:56] 2026-01-11 07:45:19,032 | INFO     |  -- lfn=log.47962010._002254.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 08:45:56] 2026-01-11 07:45:19,032 | INFO     | stage-out finished correctly
[2026-01-11 08:45:56] 2026-01-11 07:45:19,853 | INFO     | PID=566497 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 08:45:56] 2026-01-11 07:45:19,853 | INFO     | .. there are 6 such processes running
[2026-01-11 08:45:56] 2026-01-11 07:45:20,301 | INFO     | monitor loop #125: job 0:6965384113 is in state 'finished'
[2026-01-11 08:45:56] 2026-01-11 07:45:20,301 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 08:45:56] 2026-01-11 07:45:20,853 | INFO     | time since job start (1599s) is within the limit (349056.0s)
[2026-01-11 08:45:56] 2026-01-11 07:45:21,597 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 08:45:56] 2026-01-11 07:45:21,662 | INFO     | job 6965384113 has state=finished
[2026-01-11 08:45:56] 2026-01-11 07:45:21,662 | INFO     | preparing for final server update for job 6965384113 in state='finished'
[2026-01-11 08:45:56] 2026-01-11 07:45:21,663 | INFO     | this job has now completed (state=finished)
[2026-01-11 08:45:56] 2026-01-11 07:45:21,663 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 08:45:56] 2026-01-11 07:45:21,663 | INFO     | log transfer has been attempted: DONE
[2026-01-11 08:45:56] 2026-01-11 07:45:21,663 | INFO     | job 6965384113 has finished - writing final server update
[2026-01-11 08:45:56] 2026-01-11 07:45:21,663 | INFO     | total number of processed events: 50 (read)
[2026-01-11 08:45:56] 2026-01-11 07:45:21,664 | INFO     | executing command: lscpu
[2026-01-11 08:45:56] 2026-01-11 07:45:21,682 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 08:45:56] 2026-01-11 07:45:22,804 | INFO     | monitor loop #126: job 0:6965384113 is in state 'finished'
[2026-01-11 08:45:56] 2026-01-11 07:45:22,804 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 08:45:56] 2026-01-11 07:45:22,859 | INFO     | time since job start (1601s) is within the limit (349056.0s)
[2026-01-11 08:45:56] 2026-01-11 07:45:23,532 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 08:45:56] 2026-01-11 07:45:23,534 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 5223.9465
[2026-01-11 08:45:56] 2026-01-11 07:45:23,537 | INFO     | using path: /single_8TB/boinc-client/slots/9/PanDA_Pilot-6965384113/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 08:45:56] 2026-01-11 07:45:23,537 | INFO     | extracted standard info from prmon json
[2026-01-11 08:45:56] 2026-01-11 07:45:23,538 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 08:45:56] 2026-01-11 07:45:23,538 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 08:45:56] 2026-01-11 07:45:23,538 | INFO     | fitting pss+swap vs Time
[2026-01-11 08:45:56] 2026-01-11 07:45:23,538 | INFO     | sum of square deviations: 2120970.0
[2026-01-11 08:45:56] 2026-01-11 07:45:23,538 | INFO     | sum of deviations: 132092084.0
[2026-01-11 08:45:56] 2026-01-11 07:45:23,538 | INFO     | mean x: 1768116793.0
[2026-01-11 08:45:56] 2026-01-11 07:45:23,539 | INFO     | mean y: 2318072.3157894737
[2026-01-11 08:45:56] 2026-01-11 07:45:23,539 | INFO     | intersect: -110114388879.11049
[2026-01-11 08:45:56] 2026-01-11 07:45:23,539 | INFO     | chi2: 8.308297198658204e-05
[2026-01-11 08:45:56] 2026-01-11 07:45:23,539 | INFO     | current memory leak: 62.28 B/s (using 19 data points, chi2=0.00)
[2026-01-11 08:45:56] 2026-01-11 07:45:23,539 | INFO     | could have reported an average CPU frequency of 5261 MHz (4 samples)
[2026-01-11 08:45:56] 2026-01-11 07:45:23,539 | INFO     | ..............................
[2026-01-11 08:45:56] 2026-01-11 07:45:23,539 | INFO     | . Timing measurements:
[2026-01-11 08:45:56] 2026-01-11 07:45:23,539 | INFO     | . get job = 0 s
[2026-01-11 08:45:56] 2026-01-11 07:45:23,539 | INFO     | . initial setup = 1 s
[2026-01-11 08:45:56] 2026-01-11 07:45:23,539 | INFO     | . payload setup = 2 s
[2026-01-11 08:45:56] 2026-01-11 07:45:23,539 | INFO     | . stage-in = 0 s
[2026-01-11 08:45:56] 2026-01-11 07:45:23,539 | INFO     | . payload execution = 1578 s
[2026-01-11 08:45:56] 2026-01-11 07:45:23,539 | INFO     | . stage-out = 0 s
[2026-01-11 08:45:56] 2026-01-11 07:45:23,539 | INFO     | . log creation = 0 s
[2026-01-11 08:45:56] 2026-01-11 07:45:23,540 | INFO     | ..............................
[2026-01-11 08:45:56] 2026-01-11 07:45:23,578 | INFO     | 
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | job summary report
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | --------------------------------------------------
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | PanDA job id: 6965384113
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | task id: 47962010
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | errors: (none)
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | pilot state: finished 
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | transexitcode: 0
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | exeerrorcode: 0
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | exeerrordiag: 
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | exitcode: 0
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | exitmsg: OK
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | cpuconsumptiontime: 5581 s
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | nevents: 50
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | neventsw: 0
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | pid: 577141
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | pgrp: 577141
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | corecount: 4
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | event service: False
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | sizes: {0: 2284579, 2: 2284841, 11: 2284869, 1584: 2310598, 1586: 2319612, 1588: 2319668, 1590: 2320042}
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | --------------------------------------------------
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | 
[2026-01-11 08:45:56] 2026-01-11 07:45:23,579 | INFO     | executing command: ls -lF /single_8TB/boinc-client/slots/9
[2026-01-11 08:45:56] 2026-01-11 07:45:23,593 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,593 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,593 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,593 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,593 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,593 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,593 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,593 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,593 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,594 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,594 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,594 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,594 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,594 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,594 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,594 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,594 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,594 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 08:45:56] 2026-01-11 07:45:23,594 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,594 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 08:45:56] 2026-01-11 07:45:23,594 | INFO     | job 6965384113 has completed (purged errors)
[2026-01-11 08:45:56] 2026-01-11 07:45:23,594 | INFO     | overall cleanup function is called
[2026-01-11 08:45:56] 2026-01-11 07:45:24,604 | INFO     | --- collectZombieJob: --- 10, [577141]
[2026-01-11 08:45:56] 2026-01-11 07:45:24,604 | INFO     | zombie collector waiting for pid 577141
[2026-01-11 08:45:56] 2026-01-11 07:45:24,605 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 08:45:56] 2026-01-11 07:45:24,605 | INFO     | collected zombie processes
[2026-01-11 08:45:56] 2026-01-11 07:45:24,605 | INFO     | will attempt to kill all subprocesses of pid=577141
[2026-01-11 08:45:56] 2026-01-11 07:45:24,713 | INFO     | process IDs to be killed: [577141] (in reverse order)
[2026-01-11 08:45:56] 2026-01-11 07:45:24,763 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 08:45:56] 2026-01-11 07:45:24,763 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 08:45:56] 2026-01-11 07:45:24,767 | INFO     | did not find any defunct processes belonging to 577141
[2026-01-11 08:45:56] 2026-01-11 07:45:24,771 | INFO     | did not find any defunct processes belonging to 577141
[2026-01-11 08:45:56] 2026-01-11 07:45:24,772 | INFO     | ready for new job
[2026-01-11 08:45:56] 2026-01-11 07:45:24,772 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 08:45:56] 2026-01-11 07:45:24,772 | INFO     | ***************************************
[2026-01-11 08:45:56] 2026-01-11 07:45:24,772 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 08:45:56] 2026-01-11 07:45:24,772 | INFO     | ***************************************
[2026-01-11 08:45:56] 2026-01-11 07:45:24,772 | INFO     | 
[2026-01-11 08:45:56] 2026-01-11 07:45:24,773 | INFO     | architecture information:
[2026-01-11 08:45:56] 2026-01-11 07:45:24,774 | INFO     | executing command: cat /etc/os-release
[2026-01-11 08:45:56] 2026-01-11 07:45:24,782 | INFO     | cat /etc/os-release:
[2026-01-11 08:45:56] NAME="CentOS Linux"
[2026-01-11 08:45:56] VERSION="7 (Core)"
[2026-01-11 08:45:56] ID="centos"
[2026-01-11 08:45:56] ID_LIKE="rhel fedora"
[2026-01-11 08:45:56] VERSION_ID="7"
[2026-01-11 08:45:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 08:45:56] ANSI_COLOR="0;31"
[2026-01-11 08:45:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 08:45:56] HOME_URL="https://www.centos.org/"
[2026-01-11 08:45:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 08:45:56] 
[2026-01-11 08:45:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 08:45:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 08:45:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 08:45:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 08:45:56] 
[2026-01-11 08:45:56] 2026-01-11 07:45:24,782 | INFO     | ***************************************
[2026-01-11 08:45:56] 2026-01-11 07:45:25,284 | INFO     | executing command: df -mP /single_8TB/boinc-client/slots/9
[2026-01-11 08:45:56] 2026-01-11 07:45:25,295 | INFO     | sufficient remaining disk space (3320448024576 B)
[2026-01-11 08:45:56] 2026-01-11 07:45:25,295 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 08:45:56] 2026-01-11 07:45:25,295 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 08:45:56] 2026-01-11 07:45:25,295 | INFO     | update_server=False
[2026-01-11 08:45:56] 2026-01-11 07:45:25,295 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 08:45:56] 2026-01-11 07:45:25,296 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 08:45:56] 2026-01-11 07:45:25,296 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 08:45:56] 2026-01-11 07:45:25,307 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-11 08:45:56] 2026-01-11 07:45:25,307 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-11 08:45:56] 2026-01-11 07:45:25,307 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 08:45:56] 2026-01-11 07:45:25,307 | INFO     | will abort loop
[2026-01-11 08:45:56] 2026-01-11 07:45:25,545 | INFO     | all payload control threads have been joined
[2026-01-11 08:45:56] 2026-01-11 07:45:26,299 | INFO     | [job] retrieve thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:26,301 | INFO     | [job] queue monitor thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:26,312 | INFO     | [job] job monitor thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:26,371 | INFO     | all data control threads have been joined
[2026-01-11 08:45:56] 2026-01-11 07:45:26,537 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:26,550 | INFO     | [payload] control thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:26,561 | INFO     | [payload] failed_post thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:26,578 | INFO     | all job control threads have been joined
[2026-01-11 08:45:56] 2026-01-11 07:45:26,682 | INFO     | [job] validate thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:26,823 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:26,849 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:27,071 | INFO     | [payload] validate_post thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:27,172 | INFO     | [data] copytool_in thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:27,302 | INFO     | [data] copytool_out thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:27,376 | INFO     | [data] control thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:27,583 | INFO     | [job] control thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:27,640 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 08:45:56] 2026-01-11 07:45:31,646 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:35,479 | INFO     | job.realtimelogging is not enabled
[2026-01-11 08:45:56] 2026-01-11 07:45:36,483 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 08:45:56] 2026-01-11 07:45:43,447 | INFO     | [monitor] cgroup control has ended
[2026-01-11 08:45:56] 2026-01-11 07:45:44,243 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125012757837632)>', '<ExcThread(monitor, started 125012354766592)>']
[2026-01-11 08:45:56] 2026-01-11 07:45:49,268 | INFO     | all workflow threads have been joined
[2026-01-11 08:45:56] 2026-01-11 07:45:49,269 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 08:45:56] 2026-01-11 07:45:49,269 | INFO     | traces error code: 0
[2026-01-11 08:45:56] 2026-01-11 07:45:49,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 08:45:56] 2026-01-11 07:45:56,065 | INFO     | PID=566497 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 08:45:56] 2026-01-11 07:45:56,065 | INFO     | .. there are 6 such processes running
[2026-01-11 08:45:56] 2026-01-11 07:45:56,066 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 08:45:56] 2026-01-11 07:45:56,066 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 08:45:56] 2026-01-11 07:45:56,066 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 08:45:56] 2026-01-11 07:45:56,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 08:45:56] 2026-01-11 07:45:56,066 | INFO     | [monitor] control thread has ended
[2026-01-11 08:45:56] 2026-01-11 07:45:56,117 [wrapper] ==== pilot stdout END ====
[2026-01-11 08:45:56] 2026-01-11 07:45:56,118 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 08:45:56] 2026-01-11 07:45:56,119 [wrapper] pilotpid: 566497
[2026-01-11 08:45:56] 2026-01-11 07:45:56,120 [wrapper] Pilot exit status: 0
[2026-01-11 08:45:56] 2026-01-11 07:45:56,125 [wrapper] pandaids: 6965384113
[2026-01-11 08:45:56] 2026-01-11 07:45:56,156 [wrapper] cleanup supervisor_pilot  606692 566498
[2026-01-11 08:45:56] 2026-01-11 07:45:56,158 [wrapper] Test setup, not cleaning
[2026-01-11 08:45:56] 2026-01-11 07:45:56,160 [wrapper] apfmon messages muted
[2026-01-11 08:45:56] 2026-01-11 07:45:56,161 [wrapper] ==== wrapper stdout END ====
[2026-01-11 08:45:56] 2026-01-11 07:45:56,162 [wrapper] ==== wrapper stderr END ====
[2026-01-11 08:45:56]  *** Error codes and diagnostics ***
[2026-01-11 08:45:56]     "exeErrorCode": 0,
[2026-01-11 08:45:56]     "exeErrorDiag": "",
[2026-01-11 08:45:56]     "pilotErrorCode": 0,
[2026-01-11 08:45:56]     "pilotErrorDiag": "",
[2026-01-11 08:45:56]  *** Listing of results directory ***
[2026-01-11 08:45:56] total 429904
[2026-01-11 08:45:56] -rw-r--r-- 1 boinc boinc      5112 Jan 10 14:13 queuedata.json
[2026-01-11 08:45:56] -rw-r--r-- 1 boinc boinc    579449 Jan 10 14:14 pilot3.tar.gz
[2026-01-11 08:45:56] -rwx------ 1 boinc boinc     36322 Jan 10 14:14 runpilot2-wrapper.sh
[2026-01-11 08:45:56] -rw-r--r-- 1 boinc boinc       100 Jan 11 08:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 08:45:56] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 08:18 run_atlas
[2026-01-11 08:45:56] -rw-r--r-- 1 boinc boinc       105 Jan 11 08:18 job.xml
[2026-01-11 08:45:56] -rw-r--r-- 2 boinc boinc 390344352 Jan 11 08:18 EVNT.47962006._000079.pool.root.1
[2026-01-11 08:45:56] drwxrwx--x 2 boinc boinc         5 Jan 11 08:18 shared
[2026-01-11 08:45:56] -rw-r--r-- 2 boinc boinc    592618 Jan 11 08:18 input.tar.gz
[2026-01-11 08:45:56] -rw-r--r-- 2 boinc boinc     15847 Jan 11 08:18 start_atlas.sh
[2026-01-11 08:45:56] -rw-r--r-- 1 boinc boinc         0 Jan 11 08:18 boinc_setup_complete
[2026-01-11 08:45:56] -rw-r--r-- 1 boinc boinc     10105 Jan 11 08:18 init_data.xml
[2026-01-11 08:45:56] -rw-r--r-- 1 boinc boinc         0 Jan 11 08:18 boinc_lockfile
[2026-01-11 08:45:56] -rw-r--r-- 1 boinc boinc      2890 Jan 11 08:18 pandaJob.out
[2026-01-11 08:45:56] -rw------- 1 boinc boinc    989548 Jan 11 08:18 agis_schedconf.cvmfs.json
[2026-01-11 08:45:56] -rw------- 1 boinc boinc   1516240 Jan 11 08:18 agis_ddmendpoints.agis.ALL.json
[2026-01-11 08:45:56] drwx------ 5 boinc boinc        22 Jan 11 08:18 pilot3
[2026-01-11 08:45:56] -rw-r--r-- 1 boinc boinc       528 Jan 11 08:43 boinc_task_state.xml
[2026-01-11 08:45:56] -rw------- 1 boinc boinc  44533478 Jan 11 08:45 HITS.47962010._002254.pool.root.1
[2026-01-11 08:45:56] -rw------- 1 boinc boinc      1021 Jan 11 08:45 memory_monitor_summary.json
[2026-01-11 08:45:56] -rw------- 1 boinc boinc    715345 Jan 11 08:45 log.47962010._002254.job.log.tgz.1
[2026-01-11 08:45:56] -rw------- 1 boinc boinc      8506 Jan 11 08:45 heartbeat.json
[2026-01-11 08:45:56] -rw-r--r-- 1 boinc boinc      8192 Jan 11 08:45 boinc_mmap_file
[2026-01-11 08:45:56] -rw-r--r-- 1 boinc boinc        26 Jan 11 08:45 wrapper_checkpoint.txt
[2026-01-11 08:45:56] -rw------- 1 boinc boinc        95 Jan 11 08:45 pilot_heartbeat.json
[2026-01-11 08:45:56] -rw------- 1 boinc boinc       821 Jan 11 08:45 pilotlog.txt
[2026-01-11 08:45:56] -rw------- 1 boinc boinc    282648 Jan 11 08:45 log.47962010._002254.job.log.1
[2026-01-11 08:45:56] -rw------- 1 boinc boinc       353 Jan 11 08:45 output.list
[2026-01-11 08:45:56] -rw-r--r-- 1 boinc boinc       620 Jan 11 08:45 runtime_log
[2026-01-11 08:45:56] -rw------- 1 boinc boinc   1013760 Jan 11 08:45 result.tar.gz
[2026-01-11 08:45:56] -rw-r--r-- 1 boinc boinc      8939 Jan 11 08:45 runtime_log.err
[2026-01-11 08:45:56] -rw------- 1 boinc boinc       648 Jan 11 08:45 hG3MDmPyny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmynmKDmTDKMUo.diag
[2026-01-11 08:45:56] -rw-r--r-- 1 boinc boinc     21915 Jan 11 08:45 stderr.txt
[2026-01-11 08:45:56] HITS file was successfully produced:
[2026-01-11 08:45:56] -rw------- 1 boinc boinc 44533478 Jan 11 08:45 shared/HITS.pool.root.1
[2026-01-11 08:45:56]  *** Contents of shared directory: ***
[2026-01-11 08:45:56] total 425632
[2026-01-11 08:45:56] -rw-r--r-- 2 boinc boinc 390344352 Jan 11 08:18 ATLAS.root_0
[2026-01-11 08:45:56] -rw-r--r-- 2 boinc boinc    592618 Jan 11 08:18 input.tar.gz
[2026-01-11 08:45:56] -rw-r--r-- 2 boinc boinc     15847 Jan 11 08:18 start_atlas.sh
[2026-01-11 08:45:56] -rw------- 1 boinc boinc  44533478 Jan 11 08:45 HITS.pool.root.1
[2026-01-11 08:45:56] -rw------- 1 boinc boinc   1013760 Jan 11 08:45 result.tar.gz
08:45:57 (562614): run_atlas exited; CPU time 5582.163058
08:45:57 (562614): called boinc_finish(0)

</stderr_txt>
]]>

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