Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:13:51 (2893669): wrapper (7.7.26015): starting
09:13:51 (2893669): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 09:13:51] Arguments: --nthreads 8
[2026-01-10 09:13:51] Threads: 8
[2026-01-10 09:13:51] Checking for CVMFS
[2026-01-10 09:13:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 09:13:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 09:13:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 09:13:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 09:13:52] 2.13.3.0 6723 24454 180348 154982 3 15 38853310 40960001 8770 16776704 0 17737038 99.590 18372977 38976 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 09:13:52] CVMFS is ok
[2026-01-10 09:13:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 09:13:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 09:13:52] Further information can be found at the LHC@home message board.
[2026-01-10 09:13:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 09:13:52] Checking for apptainer binary...
[2026-01-10 09:13:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 09:13:52] Running /usr/bin/apptainer --version
[2026-01-10 09:13:52] apptainer version 1.4.5-2.el9
[2026-01-10 09:13:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 09:13:52] c-210-35-2.aglt2.org
[2026-01-10 09:13:52] apptainer works
[2026-01-10 09:13:52] Set ATHENA_PROC_NUMBER=8
[2026-01-10 09:13:52] Set ATHENA_CORE_NUMBER=8
[2026-01-10 09:13:52] Starting ATLAS job with PandaID=6965383966
[2026-01-10 09:13:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 10:43:51]  *** The last 200 lines of the pilot log: ***
[2026-01-10 10:43:51] 2026-01-10 15:42:53,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:43:51] 2026-01-10 15:42:54,850 | INFO     | time since job start (5318s) is within the limit (349056.0s)
[2026-01-10 10:43:51] 2026-01-10 15:42:55,201 | INFO     | job 6965383966 has state=finished
[2026-01-10 10:43:51] 2026-01-10 15:42:55,201 | INFO     | preparing for final server update for job 6965383966 in state='finished'
[2026-01-10 10:43:51] 2026-01-10 15:42:55,202 | INFO     | this job has now completed (state=finished)
[2026-01-10 10:43:51] 2026-01-10 15:42:55,202 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 10:43:51] 2026-01-10 15:42:55,202 | INFO     | log transfer has been attempted: DONE
[2026-01-10 10:43:51] 2026-01-10 15:42:55,202 | INFO     | job 6965383966 has finished - writing final server update
[2026-01-10 10:43:51] 2026-01-10 15:42:55,202 | INFO     | total number of processed events: 50 (read)
[2026-01-10 10:43:51] 2026-01-10 15:42:55,222 | INFO     | executing command: lscpu
[2026-01-10 10:43:51] 2026-01-10 15:42:55,611 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 10:43:51] 2026-01-10 15:42:56,361 | INFO     | monitor loop #352: job 0:6965383966 is in state 'finished'
[2026-01-10 10:43:51] 2026-01-10 15:42:56,361 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:43:51] 2026-01-10 15:42:56,860 | INFO     | time since job start (5320s) is within the limit (349056.0s)
[2026-01-10 10:43:51] 2026-01-10 15:42:58,870 | INFO     | monitor loop #353: job 0:6965383966 is in state 'finished'
[2026-01-10 10:43:51] 2026-01-10 15:42:58,870 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:43:51] 2026-01-10 15:42:58,870 | INFO     | time since job start (5322s) is within the limit (349056.0s)
[2026-01-10 10:43:51] 2026-01-10 15:43:00,878 | INFO     | time since job start (5324s) is within the limit (349056.0s)
[2026-01-10 10:43:51] 2026-01-10 15:43:01,375 | INFO     | monitor loop #354: job 0:6965383966 is in state 'finished'
[2026-01-10 10:43:51] 2026-01-10 15:43:01,375 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:43:51] 2026-01-10 15:43:02,575 | INFO     | PID=2898181 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 10:43:51] 2026-01-10 15:43:02,575 | INFO     | .. there are 9 such processes running
[2026-01-10 10:43:51] 2026-01-10 15:43:03,576 | INFO     | time since job start (5327s) is within the limit (349056.0s)
[2026-01-10 10:43:51] 2026-01-10 15:43:03,881 | INFO     | monitor loop #355: job 0:6965383966 is in state 'finished'
[2026-01-10 10:43:51] 2026-01-10 15:43:03,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:43:51] 2026-01-10 15:43:05,583 | INFO     | time since job start (5329s) is within the limit (349056.0s)
[2026-01-10 10:43:51] 2026-01-10 15:43:06,394 | INFO     | monitor loop #356: job 0:6965383966 is in state 'finished'
[2026-01-10 10:43:51] 2026-01-10 15:43:06,394 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:43:51] 2026-01-10 15:43:07,590 | INFO     | time since job start (5331s) is within the limit (349056.0s)
[2026-01-10 10:43:51] 2026-01-10 15:43:08,903 | INFO     | monitor loop #357: job 0:6965383966 is in state 'finished'
[2026-01-10 10:43:51] 2026-01-10 15:43:08,903 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:43:51] 2026-01-10 15:43:09,597 | INFO     | time since job start (5333s) is within the limit (349056.0s)
[2026-01-10 10:43:51] 2026-01-10 15:43:11,408 | INFO     | monitor loop #358: job 0:6965383966 is in state 'finished'
[2026-01-10 10:43:51] 2026-01-10 15:43:11,408 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:43:51] 2026-01-10 15:43:11,606 | INFO     | time since job start (5335s) is within the limit (349056.0s)
[2026-01-10 10:43:51] 2026-01-10 15:43:13,613 | INFO     | time since job start (5337s) is within the limit (349056.0s)
[2026-01-10 10:43:51] 2026-01-10 15:43:13,917 | INFO     | monitor loop #359: job 0:6965383966 is in state 'finished'
[2026-01-10 10:43:51] 2026-01-10 15:43:13,918 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:43:51] 2026-01-10 15:43:15,331 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 10:43:51] 2026-01-10 15:43:15,334 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3009.97192857143
[2026-01-10 10:43:51] 2026-01-10 15:43:15,454 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965383966/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:43:51] 2026-01-10 15:43:15,455 | INFO     | extracted standard info from prmon json
[2026-01-10 10:43:51] 2026-01-10 15:43:15,455 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 10:43:51] 2026-01-10 15:43:15,455 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 10:43:51] 2026-01-10 15:43:15,457 | INFO     | fitting pss+swap vs Time
[2026-01-10 10:43:51] 2026-01-10 15:43:15,464 | INFO     | sum of square deviations: 152877405.8987342
[2026-01-10 10:43:51] 2026-01-10 15:43:15,464 | INFO     | sum of deviations: -51924381389.4557
[2026-01-10 10:43:51] 2026-01-10 15:43:15,464 | INFO     | mean x: 1768057233.227848
[2026-01-10 10:43:51] 2026-01-10 15:43:15,464 | INFO     | mean y: 2413970.025316456
[2026-01-10 10:43:51] 2026-01-10 15:43:15,464 | INFO     | intersect: 600518085705.8494
[2026-01-10 10:43:51] 2026-01-10 15:43:15,465 | INFO     | chi2: 5.216722762147579
[2026-01-10 10:43:51] 2026-01-10 15:43:15,465 | INFO     | current memory leak: -339.65 B/s (using 79 data points, chi2=5.22)
[2026-01-10 10:43:51] 2026-01-10 15:43:15,465 | INFO     | could have reported an average CPU frequency of 3049 MHz (6 samples)
[2026-01-10 10:43:51] 2026-01-10 15:43:15,465 | INFO     | ..............................
[2026-01-10 10:43:51] 2026-01-10 15:43:15,466 | INFO     | . Timing measurements:
[2026-01-10 10:43:51] 2026-01-10 15:43:15,466 | INFO     | . get job = 0 s
[2026-01-10 10:43:51] 2026-01-10 15:43:15,466 | INFO     | . initial setup = 3 s
[2026-01-10 10:43:51] 2026-01-10 15:43:15,466 | INFO     | . payload setup = 37 s
[2026-01-10 10:43:51] 2026-01-10 15:43:15,466 | INFO     | . stage-in = 0 s
[2026-01-10 10:43:51] 2026-01-10 15:43:15,466 | INFO     | . payload execution = 5240 s
[2026-01-10 10:43:51] 2026-01-10 15:43:15,466 | INFO     | . stage-out = 2 s
[2026-01-10 10:43:51] 2026-01-10 15:43:15,466 | INFO     | . log creation = 0 s
[2026-01-10 10:43:51] 2026-01-10 15:43:15,466 | INFO     | ..............................
[2026-01-10 10:43:51] 2026-01-10 15:43:15,630 | INFO     | time since job start (5339s) is within the limit (349056.0s)
[2026-01-10 10:43:51] 2026-01-10 15:43:15,807 | INFO     | 
[2026-01-10 10:43:51] 2026-01-10 15:43:15,809 | INFO     | job summary report
[2026-01-10 10:43:51] 2026-01-10 15:43:15,809 | INFO     | --------------------------------------------------
[2026-01-10 10:43:51] 2026-01-10 15:43:15,809 | INFO     | PanDA job id: 6965383966
[2026-01-10 10:43:51] 2026-01-10 15:43:15,809 | INFO     | task id: 47962010
[2026-01-10 10:43:51] 2026-01-10 15:43:15,809 | INFO     | errors: (none)
[2026-01-10 10:43:51] 2026-01-10 15:43:15,809 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 10:43:51] 2026-01-10 15:43:15,809 | INFO     | pilot state: finished 
[2026-01-10 10:43:51] 2026-01-10 15:43:15,809 | INFO     | transexitcode: 0
[2026-01-10 10:43:51] 2026-01-10 15:43:15,810 | INFO     | exeerrorcode: 0
[2026-01-10 10:43:51] 2026-01-10 15:43:15,810 | INFO     | exeerrordiag: 
[2026-01-10 10:43:51] 2026-01-10 15:43:15,810 | INFO     | exitcode: 0
[2026-01-10 10:43:51] 2026-01-10 15:43:15,810 | INFO     | exitmsg: OK
[2026-01-10 10:43:51] 2026-01-10 15:43:15,810 | INFO     | cpuconsumptiontime: 12473 s
[2026-01-10 10:43:51] 2026-01-10 15:43:15,810 | INFO     | nevents: 50
[2026-01-10 10:43:51] 2026-01-10 15:43:15,810 | INFO     | neventsw: 0
[2026-01-10 10:43:51] 2026-01-10 15:43:15,810 | INFO     | pid: 2907527
[2026-01-10 10:43:51] 2026-01-10 15:43:15,810 | INFO     | pgrp: 2907527
[2026-01-10 10:43:51] 2026-01-10 15:43:15,810 | INFO     | corecount: 8
[2026-01-10 10:43:51] 2026-01-10 15:43:15,810 | INFO     | event service: False
[2026-01-10 10:43:51] 2026-01-10 15:43:15,810 | INFO     | sizes: {0: 2284396, 1: 2284595, 9: 2284857, 12: 2284885, 5283: 2311954, 5284: 2311953, 5288: 2321131, 5289: 2321187, 5311: 2321433}
[2026-01-10 10:43:51] 2026-01-10 15:43:15,810 | INFO     | --------------------------------------------------
[2026-01-10 10:43:51] 2026-01-10 15:43:15,810 | INFO     | 
[2026-01-10 10:43:51] 2026-01-10 15:43:15,811 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 10:43:51] 2026-01-10 15:43:16,212 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,213 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,213 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,213 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,213 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,213 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,213 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,213 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,213 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,213 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,213 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,213 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,213 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,213 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,214 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,214 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,214 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,214 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 10:43:51] 2026-01-10 15:43:16,214 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,214 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 10:43:51] 2026-01-10 15:43:16,214 | INFO     | job 6965383966 has completed (purged errors)
[2026-01-10 10:43:51] 2026-01-10 15:43:16,214 | INFO     | overall cleanup function is called
[2026-01-10 10:43:51] 2026-01-10 15:43:17,290 | INFO     | --- collectZombieJob: --- 10, [2907527]
[2026-01-10 10:43:51] 2026-01-10 15:43:17,290 | INFO     | zombie collector waiting for pid 2907527
[2026-01-10 10:43:51] 2026-01-10 15:43:17,290 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 10:43:51] 2026-01-10 15:43:17,290 | INFO     | collected zombie processes
[2026-01-10 10:43:51] 2026-01-10 15:43:17,290 | INFO     | will attempt to kill all subprocesses of pid=2907527
[2026-01-10 10:43:51] 2026-01-10 15:43:18,587 | INFO     | process IDs to be killed: [2907527] (in reverse order)
[2026-01-10 10:43:51] 2026-01-10 15:43:18,807 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 10:43:51] 2026-01-10 15:43:18,808 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 10:43:51] 2026-01-10 15:43:18,869 | INFO     | did not find any defunct processes belonging to 2907527
[2026-01-10 10:43:51] 2026-01-10 15:43:18,885 | INFO     | did not find any defunct processes belonging to 2907527
[2026-01-10 10:43:51] 2026-01-10 15:43:18,886 | INFO     | ready for new job
[2026-01-10 10:43:51] 2026-01-10 15:43:18,890 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 10:43:51] 2026-01-10 15:43:18,908 | INFO     | ***************************************
[2026-01-10 10:43:51] 2026-01-10 15:43:18,909 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 10:43:51] 2026-01-10 15:43:18,909 | INFO     | ***************************************
[2026-01-10 10:43:51] 2026-01-10 15:43:18,909 | INFO     | 
[2026-01-10 10:43:51] 2026-01-10 15:43:18,930 | INFO     | architecture information:
[2026-01-10 10:43:51] 2026-01-10 15:43:18,951 | INFO     | executing command: cat /etc/os-release
[2026-01-10 10:43:51] 2026-01-10 15:43:19,094 | INFO     | cat /etc/os-release:
[2026-01-10 10:43:51] NAME="CentOS Linux"
[2026-01-10 10:43:51] VERSION="7 (Core)"
[2026-01-10 10:43:51] ID="centos"
[2026-01-10 10:43:51] ID_LIKE="rhel fedora"
[2026-01-10 10:43:51] VERSION_ID="7"
[2026-01-10 10:43:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 10:43:51] ANSI_COLOR="0;31"
[2026-01-10 10:43:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 10:43:51] HOME_URL="https://www.centos.org/"
[2026-01-10 10:43:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 10:43:51] 
[2026-01-10 10:43:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 10:43:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 10:43:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 10:43:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 10:43:51] 
[2026-01-10 10:43:51] 2026-01-10 15:43:19,094 | INFO     | ***************************************
[2026-01-10 10:43:51] 2026-01-10 15:43:19,598 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 10:43:51] 2026-01-10 15:43:19,833 | INFO     | sufficient remaining disk space (72887566336 B)
[2026-01-10 10:43:51] 2026-01-10 15:43:19,834 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 10:43:51] 2026-01-10 15:43:19,834 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 10:43:51] 2026-01-10 15:43:19,834 | INFO     | update_server=False
[2026-01-10 10:43:51] 2026-01-10 15:43:19,834 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 10:43:51] 2026-01-10 15:43:19,953 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:43:51] 2026-01-10 15:43:19,953 | INFO     | aborting loop
[2026-01-10 10:43:51] 2026-01-10 15:43:19,977 | INFO     | all payload control threads have been joined
[2026-01-10 10:43:51] 2026-01-10 15:43:20,392 | INFO     | all job control threads have been joined
[2026-01-10 10:43:51] 2026-01-10 15:43:20,840 | INFO     | [job] retrieve thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:20,874 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:43:51] 2026-01-10 15:43:20,886 | INFO     | all data control threads have been joined
[2026-01-10 10:43:51] 2026-01-10 15:43:20,933 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:20,940 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 10:43:51] 2026-01-10 15:43:20,959 | INFO     | [job] job monitor thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:20,982 | INFO     | [payload] control thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:21,020 | INFO     | [data] copytool_in thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:21,398 | INFO     | [job] control thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:21,523 | INFO     | [payload] validate_post thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:21,523 | INFO     | [payload] failed_post thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:21,576 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:21,879 | INFO     | [job] queue monitor thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:21,892 | INFO     | [data] control thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:21,981 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:22,001 | INFO     | [job] validate thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:22,333 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 10:43:51] 2026-01-10 15:43:22,947 | INFO     | [data] copytool_out thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:25,648 | INFO     | [monitor] cgroup control has ended
[2026-01-10 10:43:51] 2026-01-10 15:43:26,342 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:29,964 | INFO     | job.realtimelogging is not enabled
[2026-01-10 10:43:51] 2026-01-10 15:43:30,970 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 10:43:51] 2026-01-10 15:43:31,211 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140379255011136)>', '<ExcThread(monitor, started 140378900514560)>']
[2026-01-10 10:43:51] 2026-01-10 15:43:36,237 | INFO     | all workflow threads have been joined
[2026-01-10 10:43:51] 2026-01-10 15:43:36,237 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 10:43:51] 2026-01-10 15:43:36,237 | INFO     | traces error code: 0
[2026-01-10 10:43:51] 2026-01-10 15:43:36,237 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 10:43:51] 2026-01-10 15:43:49,586 | INFO     | PID=2898181 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 10:43:51] 2026-01-10 15:43:49,586 | INFO     | .. there are 9 such processes running
[2026-01-10 10:43:51] 2026-01-10 15:43:49,587 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 10:43:51] 2026-01-10 15:43:49,587 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 10:43:51] 2026-01-10 15:43:49,587 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 10:43:51] 2026-01-10 15:43:49,587 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 10:43:51] 2026-01-10 15:43:49,587 | INFO     | [monitor] control thread has ended
[2026-01-10 10:43:51] 2026-01-10 15:43:51,216 [wrapper] ==== pilot stdout END ====
[2026-01-10 10:43:51] 2026-01-10 15:43:51,222 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 10:43:51] 2026-01-10 15:43:51,229 [wrapper] pilotpid: 2898181
[2026-01-10 10:43:51] 2026-01-10 15:43:51,232 [wrapper] Pilot exit status: 0
[2026-01-10 10:43:51] 2026-01-10 15:43:51,262 [wrapper] pandaids: 6965383966
[2026-01-10 10:43:51] 2026-01-10 15:43:51,318 [wrapper] cleanup supervisor_pilot 3036472 2898182
[2026-01-10 10:43:51] 2026-01-10 15:43:51,321 [wrapper] Test setup, not cleaning
[2026-01-10 10:43:51] 2026-01-10 15:43:51,344 [wrapper] apfmon messages muted
[2026-01-10 10:43:51] 2026-01-10 15:43:51,360 [wrapper] ==== wrapper stdout END ====
[2026-01-10 10:43:51] 2026-01-10 15:43:51,364 [wrapper] ==== wrapper stderr END ====
[2026-01-10 10:43:51]  *** Error codes and diagnostics ***
[2026-01-10 10:43:51]     "exeErrorCode": 0,
[2026-01-10 10:43:51]     "exeErrorDiag": "",
[2026-01-10 10:43:51]     "pilotErrorCode": 0,
[2026-01-10 10:43:51]     "pilotErrorDiag": "",
[2026-01-10 10:43:51]  *** Listing of results directory ***
[2026-01-10 10:43:51] total 433900
[2026-01-10 10:43:51] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:13 queuedata.json
[2026-01-10 10:43:51] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 10:43:51] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 10:43:51] -rw-r--r--. 1 boincer umatlas       100 Jan 10 09:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 10:43:51] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 09:13 run_atlas
[2026-01-10 10:43:51] -rw-r--r--. 1 boincer umatlas       105 Jan 10 09:13 job.xml
[2026-01-10 10:43:51] -rw-r--r--. 2 boincer umatlas 394320947 Jan 10 09:13 EVNT.47962006._000059.pool.root.1
[2026-01-10 10:43:51] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:13 start_atlas.sh
[2026-01-10 10:43:51] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 09:13 shared
[2026-01-10 10:43:51] -rw-r--r--. 2 boincer umatlas    592619 Jan 10 09:13 input.tar.gz
[2026-01-10 10:43:51] -rw-r--r--. 1 boincer umatlas         0 Jan 10 09:13 boinc_lockfile
[2026-01-10 10:43:51] -rw-r--r--. 1 boincer umatlas      2889 Jan 10 09:13 pandaJob.out
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas        57 Jan 10 09:13 setup.sh.local
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas    989556 Jan 10 09:14 agis_schedconf.cvmfs.json
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas   1516240 Jan 10 09:14 agis_ddmendpoints.agis.ALL.json
[2026-01-10 10:43:51] drwx------. 5 boincer umatlas      4096 Jan 10 09:14 pilot3
[2026-01-10 10:43:51] -rw-r--r--. 1 boincer umatlas       529 Jan 10 10:13 boinc_task_state.xml
[2026-01-10 10:43:51] -rw-r--r--. 1 boincer umatlas      6840 Jan 10 10:39 init_data.xml
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas  42191278 Jan 10 10:42 HITS.47962010._002107.pool.root.1
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas      1040 Jan 10 10:42 memory_monitor_summary.json
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas   1213752 Jan 10 10:42 log.47962010._002107.job.log.tgz.1
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas        95 Jan 10 10:42 pilot_heartbeat.json
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas      8575 Jan 10 10:43 heartbeat.json
[2026-01-10 10:43:51] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 10:43 boinc_mmap_file
[2026-01-10 10:43:51] -rw-r--r--. 1 boincer umatlas        27 Jan 10 10:43 wrapper_checkpoint.txt
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas       822 Jan 10 10:43 pilotlog.txt
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas    731451 Jan 10 10:43 log.47962010._002107.job.log.1
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas       353 Jan 10 10:43 output.list
[2026-01-10 10:43:51] -rw-r--r--. 1 boincer umatlas       620 Jan 10 10:43 runtime_log
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas   1966080 Jan 10 10:43 result.tar.gz
[2026-01-10 10:43:51] -rw-r--r--. 1 boincer umatlas      9352 Jan 10 10:43 runtime_log.err
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas       653 Jan 10 10:43 9JhNDmNyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8XhKDmMJUixm.diag
[2026-01-10 10:43:51] -rw-r--r--. 1 boincer umatlas     22385 Jan 10 10:43 stderr.txt
[2026-01-10 10:43:51] HITS file was successfully produced:
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas 42191278 Jan 10 10:42 shared/HITS.pool.root.1
[2026-01-10 10:43:51]  *** Contents of shared directory: ***
[2026-01-10 10:43:51] total 428800
[2026-01-10 10:43:51] -rw-r--r--. 2 boincer umatlas 394320947 Jan 10 09:13 ATLAS.root_0
[2026-01-10 10:43:51] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:13 start_atlas.sh
[2026-01-10 10:43:51] -rw-r--r--. 2 boincer umatlas    592619 Jan 10 09:13 input.tar.gz
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas  42191278 Jan 10 10:42 HITS.pool.root.1
[2026-01-10 10:43:51] -rw-------. 1 boincer umatlas   1966080 Jan 10 10:43 result.tar.gz
10:43:52 (2893669): run_atlas exited; CPU time 12512.009036
10:43:52 (2893669): called boinc_finish(0)

</stderr_txt>
]]>

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