Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:02:50 (2294754): wrapper (7.7.26015): starting
09:02:50 (2294754): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 09:02:50] Arguments: --nthreads 8
[2026-01-10 09:02:50] Threads: 8
[2026-01-10 09:02:50] Checking for CVMFS
[2026-01-10 09:02:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 09:02:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 09:02:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 09:02:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 09:02:54] 2.13.3.0 12257 94895 679932 154981 1 294 28481350 32935937 33334 16776704 0 648829666 99.727 434369612 23223 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 09:02:54] CVMFS is ok
[2026-01-10 09:02:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 09:02:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 09:02:54] Further information can be found at the LHC@home message board.
[2026-01-10 09:02:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 09:02:54] Checking for apptainer binary...
[2026-01-10 09:02:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 09:02:54] Running /usr/bin/apptainer --version
[2026-01-10 09:02:54] apptainer version 1.4.5-2.el9
[2026-01-10 09:02:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 09:02:55] c-1-3.aglt2.org
[2026-01-10 09:02:55] apptainer works
[2026-01-10 09:02:55] Set ATHENA_PROC_NUMBER=8
[2026-01-10 09:02:55] Set ATHENA_CORE_NUMBER=8
[2026-01-10 09:02:55] Starting ATLAS job with PandaID=6965383940
[2026-01-10 09:02:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 13:09:18]  *** The last 200 lines of the pilot log: ***
[2026-01-10 13:09:18] 2026-01-10 18:07:48,852 | INFO     | monitor loop #610: job 0:6965383940 is in state 'finished'
[2026-01-10 13:09:18] 2026-01-10 18:07:48,852 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:09:18] 2026-01-10 18:07:50,035 | INFO     | time since job start (14588s) is within the limit (349056.0s)
[2026-01-10 13:09:18] 2026-01-10 18:07:51,409 | INFO     | monitor loop #611: job 0:6965383940 is in state 'finished'
[2026-01-10 13:09:18] 2026-01-10 18:07:51,409 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:09:18] 2026-01-10 18:07:52,057 | INFO     | time since job start (14590s) is within the limit (349056.0s)
[2026-01-10 13:09:18] 2026-01-10 18:07:53,925 | INFO     | monitor loop #612: job 0:6965383940 is in state 'finished'
[2026-01-10 13:09:18] 2026-01-10 18:07:53,938 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:09:18] 2026-01-10 18:07:54,074 | INFO     | time since job start (14592s) is within the limit (349056.0s)
[2026-01-10 13:09:18] 2026-01-10 18:07:56,466 | INFO     | monitor loop #613: job 0:6965383940 is in state 'finished'
[2026-01-10 13:09:18] 2026-01-10 18:07:56,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:09:18] 2026-01-10 18:07:59,028 | INFO     | monitor loop #614: job 0:6965383940 is in state 'finished'
[2026-01-10 13:09:18] 2026-01-10 18:07:59,028 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:09:18] 2026-01-10 18:08:01,414 | INFO     | PID=2313413 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 13:09:18] 2026-01-10 18:08:01,415 | INFO     | .. there are 60 such processes running
[2026-01-10 13:09:18] 2026-01-10 18:08:01,621 | INFO     | monitor loop #615: job 0:6965383940 is in state 'finished'
[2026-01-10 13:09:18] 2026-01-10 18:08:01,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:09:18] 2026-01-10 18:08:01,764 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 13:09:18] 2026-01-10 18:08:01,801 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 1799.9995125
[2026-01-10 13:09:18] 2026-01-10 18:08:01,946 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6965383940/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 13:09:18] 2026-01-10 18:08:01,947 | INFO     | extracted standard info from prmon json
[2026-01-10 13:09:18] 2026-01-10 18:08:01,948 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 13:09:18] 2026-01-10 18:08:01,948 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 13:09:18] 2026-01-10 18:08:01,988 | INFO     | fitting pss+swap vs Time
[2026-01-10 13:09:18] 2026-01-10 18:08:02,003 | INFO     | sum of square deviations: 4024384190.5276756
[2026-01-10 13:09:18] 2026-01-10 18:08:02,030 | INFO     | sum of deviations: 25679581772.480972
[2026-01-10 13:09:18] 2026-01-10 18:08:02,031 | INFO     | mean x: 1768061229.1659575
[2026-01-10 13:09:18] 2026-01-10 18:08:02,031 | INFO     | mean y: 2265033.885106383
[2026-01-10 13:09:18] 2026-01-10 18:08:02,031 | INFO     | intersect: -11279727629.734613
[2026-01-10 13:09:18] 2026-01-10 18:08:02,031 | INFO     | chi2: 22.60058218692251
[2026-01-10 13:09:18] 2026-01-10 18:08:02,032 | INFO     | sum of square deviations: 3773159335.2869644
[2026-01-10 13:09:18] 2026-01-10 18:08:02,057 | INFO     | sum of deviations: 85251681097.68689
[2026-01-10 13:09:18] 2026-01-10 18:08:02,058 | INFO     | mean x: 1768061076.730435
[2026-01-10 13:09:18] 2026-01-10 18:08:02,058 | INFO     | mean y: 2301251.9304347825
[2026-01-10 13:09:18] 2026-01-10 18:08:02,058 | INFO     | intersect: -39945701384.749176
[2026-01-10 13:09:18] 2026-01-10 18:08:02,059 | INFO     | chi2: 19.153235459123945
[2026-01-10 13:09:18] 2026-01-10 18:08:02,059 | INFO     | current chi2=19.153235459123945 (change=15.253353649417582 %)
[2026-01-10 13:09:18] 2026-01-10 18:08:02,059 | INFO     | right removable region: 229
[2026-01-10 13:09:18] 2026-01-10 18:08:02,059 | INFO     | sum of square deviations: 3772719946.821727
[2026-01-10 13:09:18] 2026-01-10 18:08:02,085 | INFO     | sum of deviations: -49271974949.96943
[2026-01-10 13:09:18] 2026-01-10 18:08:02,085 | INFO     | mean x: 1768061381.7347827
[2026-01-10 13:09:18] 2026-01-10 18:08:02,085 | INFO     | mean y: 2310441.5086956522
[2026-01-10 13:09:18] 2026-01-10 18:08:02,085 | INFO     | intersect: 23093310393.47546
[2026-01-10 13:09:18] 2026-01-10 18:08:02,086 | INFO     | chi2: 17.61258012217664
[2026-01-10 13:09:18] 2026-01-10 18:08:02,086 | INFO     | current chi2=17.61258012217664 (change=22.070237056247606 %)
[2026-01-10 13:09:18] 2026-01-10 18:08:02,086 | INFO     | left removable region: 10
[2026-01-10 13:09:18] 2026-01-10 18:08:02,087 | INFO     | sum of square deviations: 3256931806.009126
[2026-01-10 13:09:18] 2026-01-10 18:08:02,137 | INFO     | sum of deviations: -36725287324.05476
[2026-01-10 13:09:18] 2026-01-10 18:08:02,137 | INFO     | mean x: 1768061351.3881278
[2026-01-10 13:09:18] 2026-01-10 18:08:02,137 | INFO     | mean y: 2396779.671232877
[2026-01-10 13:09:18] 2026-01-10 18:08:02,138 | INFO     | intersect: 19939124044.418762
[2026-01-10 13:09:18] 2026-01-10 18:08:02,138 | INFO     | chi2: 10.325749811840387
[2026-01-10 13:09:18] 2026-01-10 18:08:02,138 | INFO     | current memory leak: -11.28 B/s (using 219 data points, chi2=10.33)
[2026-01-10 13:09:18] 2026-01-10 18:08:02,139 | INFO     | could have reported an average CPU frequency of 1775 MHz (11 samples)
[2026-01-10 13:09:18] 2026-01-10 18:08:02,139 | INFO     | ..............................
[2026-01-10 13:09:18] 2026-01-10 18:08:02,140 | INFO     | . Timing measurements:
[2026-01-10 13:09:18] 2026-01-10 18:08:02,140 | INFO     | . get job = 0 s
[2026-01-10 13:09:18] 2026-01-10 18:08:02,140 | INFO     | . initial setup = 12 s
[2026-01-10 13:09:18] 2026-01-10 18:08:02,140 | INFO     | . payload setup = 60 s
[2026-01-10 13:09:18] 2026-01-10 18:08:02,140 | INFO     | . stage-in = 0 s
[2026-01-10 13:09:18] 2026-01-10 18:08:02,140 | INFO     | . payload execution = 14365 s
[2026-01-10 13:09:18] 2026-01-10 18:08:02,140 | INFO     | . stage-out = 11 s
[2026-01-10 13:09:18] 2026-01-10 18:08:02,140 | INFO     | . log creation = 2 s
[2026-01-10 13:09:18] 2026-01-10 18:08:02,140 | INFO     | ..............................
[2026-01-10 13:09:18] 2026-01-10 18:08:02,426 | INFO     | time since job start (14600s) is within the limit (349056.0s)
[2026-01-10 13:09:18] 2026-01-10 18:08:03,376 | INFO     | 
[2026-01-10 13:09:18] 2026-01-10 18:08:03,376 | INFO     | job summary report
[2026-01-10 13:09:18] 2026-01-10 18:08:03,377 | INFO     | --------------------------------------------------
[2026-01-10 13:09:18] 2026-01-10 18:08:03,377 | INFO     | PanDA job id: 6965383940
[2026-01-10 13:09:18] 2026-01-10 18:08:03,377 | INFO     | task id: 47962010
[2026-01-10 13:09:18] 2026-01-10 18:08:03,377 | INFO     | errors: (none)
[2026-01-10 13:09:18] 2026-01-10 18:08:03,377 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 13:09:18] 2026-01-10 18:08:03,377 | INFO     | pilot state: finished 
[2026-01-10 13:09:18] 2026-01-10 18:08:03,377 | INFO     | transexitcode: 0
[2026-01-10 13:09:18] 2026-01-10 18:08:03,378 | INFO     | exeerrorcode: 0
[2026-01-10 13:09:18] 2026-01-10 18:08:03,378 | INFO     | exeerrordiag: 
[2026-01-10 13:09:18] 2026-01-10 18:08:03,378 | INFO     | exitcode: 0
[2026-01-10 13:09:18] 2026-01-10 18:08:03,378 | INFO     | exitmsg: OK
[2026-01-10 13:09:18] 2026-01-10 18:08:03,378 | INFO     | cpuconsumptiontime: 24321 s
[2026-01-10 13:09:18] 2026-01-10 18:08:03,378 | INFO     | nevents: 50
[2026-01-10 13:09:18] 2026-01-10 18:08:03,378 | INFO     | neventsw: 0
[2026-01-10 13:09:18] 2026-01-10 18:08:03,378 | INFO     | pid: 2347834
[2026-01-10 13:09:18] 2026-01-10 18:08:03,379 | INFO     | pgrp: 2347834
[2026-01-10 13:09:18] 2026-01-10 18:08:03,379 | INFO     | corecount: 8
[2026-01-10 13:09:18] 2026-01-10 18:08:03,379 | INFO     | event service: False
[2026-01-10 13:09:18] 2026-01-10 18:08:03,379 | INFO     | sizes: {0: 2284342, 1: 2284398, 4: 2284454, 5: 2284681, 16: 2284681, 29: 2284709, 41: 2284865, 49: 2285155, 52: 2285183, 14435: 2315844, 14436: 2315843, 14449: 232
[2026-01-10 13:09:18] 2026-01-10 18:08:03,379 | INFO     | --------------------------------------------------
[2026-01-10 13:09:18] 2026-01-10 18:08:03,379 | INFO     | 
[2026-01-10 13:09:18] 2026-01-10 18:08:03,388 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-10 13:09:18] 2026-01-10 18:08:03,478 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,479 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,479 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,479 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,479 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,479 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,480 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,480 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,480 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,480 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,480 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,480 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,480 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,481 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,481 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,481 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,481 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,481 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 13:09:18] 2026-01-10 18:08:03,481 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,481 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 13:09:18] 2026-01-10 18:08:03,486 | INFO     | job 6965383940 has completed (purged errors)
[2026-01-10 13:09:18] 2026-01-10 18:08:03,486 | INFO     | overall cleanup function is called
[2026-01-10 13:09:18] 2026-01-10 18:08:04,566 | INFO     | --- collectZombieJob: --- 10, [2347834]
[2026-01-10 13:09:18] 2026-01-10 18:08:04,566 | INFO     | zombie collector waiting for pid 2347834
[2026-01-10 13:09:18] 2026-01-10 18:08:04,566 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 13:09:18] 2026-01-10 18:08:04,566 | INFO     | collected zombie processes
[2026-01-10 13:09:18] 2026-01-10 18:08:04,567 | INFO     | will attempt to kill all subprocesses of pid=2347834
[2026-01-10 13:09:18] 2026-01-10 18:08:09,723 | INFO     | process IDs to be killed: [2347834] (in reverse order)
[2026-01-10 13:09:18] 2026-01-10 18:08:11,402 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 13:09:18] 2026-01-10 18:08:11,403 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 13:09:18] 2026-01-10 18:08:11,688 | INFO     | did not find any defunct processes belonging to 2347834
[2026-01-10 13:09:18] 2026-01-10 18:08:12,010 | INFO     | did not find any defunct processes belonging to 2347834
[2026-01-10 13:09:18] 2026-01-10 18:08:12,011 | INFO     | ready for new job
[2026-01-10 13:09:18] 2026-01-10 18:08:12,011 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 13:09:18] 2026-01-10 18:08:12,039 | INFO     | ***************************************
[2026-01-10 13:09:18] 2026-01-10 18:08:12,039 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 13:09:18] 2026-01-10 18:08:12,039 | INFO     | ***************************************
[2026-01-10 13:09:18] 2026-01-10 18:08:12,039 | INFO     | 
[2026-01-10 13:09:18] 2026-01-10 18:08:12,047 | INFO     | architecture information:
[2026-01-10 13:09:18] 2026-01-10 18:08:12,049 | INFO     | executing command: cat /etc/os-release
[2026-01-10 13:09:18] 2026-01-10 18:08:12,156 | INFO     | cat /etc/os-release:
[2026-01-10 13:09:18] NAME="CentOS Linux"
[2026-01-10 13:09:18] VERSION="7 (Core)"
[2026-01-10 13:09:18] ID="centos"
[2026-01-10 13:09:18] ID_LIKE="rhel fedora"
[2026-01-10 13:09:18] VERSION_ID="7"
[2026-01-10 13:09:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 13:09:18] ANSI_COLOR="0;31"
[2026-01-10 13:09:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 13:09:18] HOME_URL="https://www.centos.org/"
[2026-01-10 13:09:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 13:09:18] 
[2026-01-10 13:09:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 13:09:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 13:09:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 13:09:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 13:09:18] 
[2026-01-10 13:09:18] 2026-01-10 18:08:12,157 | INFO     | ***************************************
[2026-01-10 13:09:18] 2026-01-10 18:08:12,663 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-10 13:09:18] 2026-01-10 18:08:12,778 | INFO     | sufficient remaining disk space (75182899200 B)
[2026-01-10 13:09:18] 2026-01-10 18:08:12,778 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 13:09:18] 2026-01-10 18:08:12,778 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 13:09:18] 2026-01-10 18:08:12,779 | INFO     | update_server=False
[2026-01-10 13:09:18] 2026-01-10 18:08:12,779 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 13:09:18] 2026-01-10 18:08:12,793 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:09:18] 2026-01-10 18:08:12,793 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 13:09:18] 2026-01-10 18:08:12,911 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:09:18] 2026-01-10 18:08:12,911 | INFO     | aborting loop
[2026-01-10 13:09:18] 2026-01-10 18:08:13,500 | INFO     | all data control threads have been joined
[2026-01-10 13:09:18] 2026-01-10 18:08:13,627 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 13:09:18] 2026-01-10 18:08:13,638 | INFO     | all job control threads have been joined
[2026-01-10 13:09:18] 2026-01-10 18:08:13,793 | INFO     | [job] retrieve thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:13,799 | INFO     | [job] queue monitor thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:13,925 | INFO     | [job] job monitor thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:14,036 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:14,307 | INFO     | all payload control threads have been joined
[2026-01-10 13:09:18] 2026-01-10 18:08:14,315 | INFO     | [job] validate thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:14,506 | INFO     | [data] control thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:14,558 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:14,584 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:14,644 | INFO     | [job] control thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:14,697 | INFO     | [payload] validate_post thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:14,722 | INFO     | [payload] failed_post thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:14,922 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:15,238 | INFO     | [data] copytool_in thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:15,316 | INFO     | [payload] control thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:15,638 | INFO     | [data] copytool_out thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:16,818 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 13:09:18] 2026-01-10 18:08:45,767 | INFO     | PID=2313413 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 13:09:18] 2026-01-10 18:08:45,767 | INFO     | .. there are 60 such processes running
[2026-01-10 13:09:18] 2026-01-10 18:08:45,783 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 13:09:18] 2026-01-10 18:08:45,783 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 13:09:18] 2026-01-10 18:08:45,783 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 13:09:18] 2026-01-10 18:09:08,612 | INFO     | [monitor] cgroup control has ended
[2026-01-10 13:09:18] 2026-01-10 18:09:10,022 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139944231642944)>', '<ExcThread(monitor, started 139943506597632)>']
[2026-01-10 13:09:18] 2026-01-10 18:09:10,994 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 13:09:18] 2026-01-10 18:09:10,994 | INFO     | [monitor] control thread has ended
[2026-01-10 13:09:18] 2026-01-10 18:09:15,069 | INFO     | all workflow threads have been joined
[2026-01-10 13:09:18] 2026-01-10 18:09:15,069 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 13:09:18] 2026-01-10 18:09:15,090 | INFO     | traces error code: 0
[2026-01-10 13:09:18] 2026-01-10 18:09:15,093 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 13:09:18] 2026-01-10 18:09:15,922 [wrapper] ==== pilot stdout END ====
[2026-01-10 13:09:18] 2026-01-10 18:09:15,938 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 13:09:18] 2026-01-10 18:09:15,986 [wrapper] pilotpid: 2313413
[2026-01-10 13:09:18] 2026-01-10 18:09:16,037 [wrapper] Pilot exit status: 0
[2026-01-10 13:09:18] 2026-01-10 18:09:16,138 [wrapper] pandaids: 6965383940
[2026-01-10 13:09:18] 2026-01-10 18:09:16,594 [wrapper] cleanup supervisor_pilot   27953 2313414
[2026-01-10 13:09:18] 2026-01-10 18:09:16,634 [wrapper] Test setup, not cleaning
[2026-01-10 13:09:18] 2026-01-10 18:09:16,686 [wrapper] apfmon messages muted
[2026-01-10 13:09:18] 2026-01-10 18:09:16,733 [wrapper] ==== wrapper stdout END ====
[2026-01-10 13:09:18] 2026-01-10 18:09:16,786 [wrapper] ==== wrapper stderr END ====
[2026-01-10 13:09:18]  *** Error codes and diagnostics ***
[2026-01-10 13:09:18]     "exeErrorCode": 0,
[2026-01-10 13:09:18]     "exeErrorDiag": "",
[2026-01-10 13:09:18]     "pilotErrorCode": 0,
[2026-01-10 13:09:18]     "pilotErrorDiag": "",
[2026-01-10 13:09:18]  *** Listing of results directory ***
[2026-01-10 13:09:18] total 432300
[2026-01-10 13:09:18] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:13 queuedata.json
[2026-01-10 13:09:18] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 13:09:18] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 13:09:18] -rw-r--r--. 1 boincer umatlas       100 Jan 10 09:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 13:09:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 09:02 run_atlas
[2026-01-10 13:09:18] -rw-r--r--. 1 boincer umatlas       105 Jan 10 09:02 job.xml
[2026-01-10 13:09:18] -rw-r--r--. 2 boincer umatlas 391830875 Jan 10 09:02 EVNT.47962006._000054.pool.root.1
[2026-01-10 13:09:18] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:02 start_atlas.sh
[2026-01-10 13:09:18] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 09:02 shared
[2026-01-10 13:09:18] -rw-r--r--. 2 boincer umatlas    592615 Jan 10 09:02 input.tar.gz
[2026-01-10 13:09:18] -rw-r--r--. 1 boincer umatlas         0 Jan 10 09:02 boinc_lockfile
[2026-01-10 13:09:18] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 09:02 pandaJob.out
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas        57 Jan 10 09:02 setup.sh.local
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas    989556 Jan 10 09:04 agis_schedconf.cvmfs.json
[2026-01-10 13:09:18] drwx------. 5 boincer umatlas      4096 Jan 10 09:04 pilot3
[2026-01-10 13:09:18] -rw-r--r--. 1 boincer umatlas       531 Jan 10 12:26 boinc_task_state.xml
[2026-01-10 13:09:18] -rw-r--r--. 1 boincer umatlas      6839 Jan 10 13:03 init_data.xml
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas  41434320 Jan 10 13:06 HITS.47962010._002081.pool.root.1
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas      1042 Jan 10 13:06 memory_monitor_summary.json
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas   1516240 Jan 10 13:07 agis_ddmendpoints.agis.ALL.json
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas   1301522 Jan 10 13:07 log.47962010._002081.job.log.tgz.1
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas      8571 Jan 10 13:08 heartbeat.json
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas        96 Jan 10 13:08 pilot_heartbeat.json
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas      4824 Jan 10 13:09 pilotlog.txt
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas   1442563 Jan 10 13:09 log.47962010._002081.job.log.1
[2026-01-10 13:09:18] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 13:09 boinc_mmap_file
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas       353 Jan 10 13:09 output.list
[2026-01-10 13:09:18] -rw-r--r--. 1 boincer umatlas        28 Jan 10 13:09 wrapper_checkpoint.txt
[2026-01-10 13:09:18] -rw-r--r--. 1 boincer umatlas       620 Jan 10 13:09 runtime_log
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas   2764800 Jan 10 13:09 result.tar.gz
[2026-01-10 13:09:18] -rw-r--r--. 1 boincer umatlas      9328 Jan 10 13:09 runtime_log.err
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas       654 Jan 10 13:09 1z9MDmNyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvXhKDmmFWtAn.diag
[2026-01-10 13:09:18] -rw-r--r--. 1 boincer umatlas     21799 Jan 10 13:09 stderr.txt
[2026-01-10 13:09:18] HITS file was successfully produced:
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas 41434320 Jan 10 13:06 shared/HITS.pool.root.1
[2026-01-10 13:09:18]  *** Contents of shared directory: ***
[2026-01-10 13:09:18] total 426416
[2026-01-10 13:09:18] -rw-r--r--. 2 boincer umatlas 391830875 Jan 10 09:02 ATLAS.root_0
[2026-01-10 13:09:18] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:02 start_atlas.sh
[2026-01-10 13:09:18] -rw-r--r--. 2 boincer umatlas    592615 Jan 10 09:02 input.tar.gz
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas  41434320 Jan 10 13:06 HITS.pool.root.1
[2026-01-10 13:09:18] -rw-------. 1 boincer umatlas   2764800 Jan 10 13:09 result.tar.gz
13:09:19 (2294754): run_atlas exited; CPU time 25124.581622
13:09:19 (2294754): called boinc_finish(0)

</stderr_txt>
]]>

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