Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:21:05 (21237): wrapper (7.7.26015): starting
14:21:05 (21237): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 14:21:05] Arguments: --nthreads 8
[2026-01-10 14:21:05] Threads: 8
[2026-01-10 14:21:05] Checking for CVMFS
[2026-01-10 14:21:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 14:21:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 14:21:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 14:21:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 14:21:08] 2.11.2.0 25330 36885 130012 154981 3 11 17296956 25165824 899 130560 0 16842308 99.796 11268771 3530 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 14:21:08] CVMFS is ok
[2026-01-10 14:21:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 14:21:08] Checking for apptainer binary...
[2026-01-10 14:21:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 14:21:08] Running /usr/bin/apptainer --version
[2026-01-10 14:21:08] apptainer version 1.3.2-1.el7
[2026-01-10 14:21:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 14:21:13] cg-vwn437.simple-grid.lan
[2026-01-10 14:21:13] apptainer works
[2026-01-10 14:21:13] Set ATHENA_PROC_NUMBER=8
[2026-01-10 14:21:13] Set ATHENA_CORE_NUMBER=8
[2026-01-10 14:21:13] Starting ATLAS job with PandaID=6965383864
[2026-01-10 14:21:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 16:30:07]  *** The last 200 lines of the pilot log: ***
[2026-01-10 16:30:07] 2026-01-10 15:29:21,005 | INFO     | time since job start (7428s) is within the limit (349056.0s)
[2026-01-10 16:30:07] 2026-01-10 15:29:23,012 | INFO     | time since job start (7430s) is within the limit (349056.0s)
[2026-01-10 16:30:07] 2026-01-10 15:29:23,077 | INFO     | monitor loop #624: job 0:6965383864 is in state 'finished'
[2026-01-10 16:30:07] 2026-01-10 15:29:23,078 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 16:30:07] 2026-01-10 15:29:25,022 | INFO     | time since job start (7432s) is within the limit (349056.0s)
[2026-01-10 16:30:07] 2026-01-10 15:29:25,023 | INFO     | 7442s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-10 16:30:07] 2026-01-10 15:29:25,588 | INFO     | monitor loop #625: job 0:6965383864 is in state 'finished'
[2026-01-10 16:30:07] 2026-01-10 15:29:25,589 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 16:30:07] 2026-01-10 15:29:27,034 | INFO     | time since job start (7434s) is within the limit (349056.0s)
[2026-01-10 16:30:07] 2026-01-10 15:29:28,093 | INFO     | monitor loop #626: job 0:6965383864 is in state 'finished'
[2026-01-10 16:30:07] 2026-01-10 15:29:28,093 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 16:30:07] 2026-01-10 15:29:28,195 | INFO     | PID=25209 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 16:30:07] 2026-01-10 15:29:28,195 | INFO     | .. there are 2 such processes running
[2026-01-10 16:30:07] 2026-01-10 15:29:29,196 | INFO     | time since job start (7436s) is within the limit (349056.0s)
[2026-01-10 16:30:07] 2026-01-10 15:29:30,595 | INFO     | monitor loop #627: job 0:6965383864 is in state 'finished'
[2026-01-10 16:30:07] 2026-01-10 15:29:30,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 16:30:07] 2026-01-10 15:29:31,203 | INFO     | time since job start (7438s) is within the limit (349056.0s)
[2026-01-10 16:30:07] 2026-01-10 15:29:32,438 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 16:30:07] 2026-01-10 15:29:32,439 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-10 16:30:07] 2026-01-10 15:29:32,441 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6965383864/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 16:30:07] 2026-01-10 15:29:32,442 | INFO     | extracted standard info from prmon json
[2026-01-10 16:30:07] 2026-01-10 15:29:32,442 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 16:30:07] 2026-01-10 15:29:32,442 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 16:30:07] 2026-01-10 15:29:32,445 | INFO     | fitting pss+swap vs Time
[2026-01-10 16:30:07] 2026-01-10 15:29:32,445 | INFO     | sum of square deviations: 424049095.2972981
[2026-01-10 16:30:07] 2026-01-10 15:29:32,446 | INFO     | sum of deviations: -5303455224.378359
[2026-01-10 16:30:07] 2026-01-10 15:29:32,446 | INFO     | mean x: 1768055460.3513513
[2026-01-10 16:30:07] 2026-01-10 15:29:32,447 | INFO     | mean y: 1610125.189189189
[2026-01-10 16:30:07] 2026-01-10 15:29:32,447 | INFO     | intersect: 22114151036.559467
[2026-01-10 16:30:07] 2026-01-10 15:29:32,447 | INFO     | chi2: 48.539487668417095
[2026-01-10 16:30:07] 2026-01-10 15:29:32,447 | INFO     | sum of square deviations: 369297172.1509438
[2026-01-10 16:30:07] 2026-01-10 15:29:32,448 | INFO     | sum of deviations: 12321104448.84903
[2026-01-10 16:30:07] 2026-01-10 15:29:32,448 | INFO     | mean x: 1768055307.8679245
[2026-01-10 16:30:07] 2026-01-10 15:29:32,448 | INFO     | mean y: 1659354.1320754718
[2026-01-10 16:30:07] 2026-01-10 15:29:32,448 | INFO     | intersect: -58987132768.75651
[2026-01-10 16:30:07] 2026-01-10 15:29:32,449 | INFO     | chi2: 43.61767399085268
[2026-01-10 16:30:07] 2026-01-10 15:29:32,449 | INFO     | current chi2=43.61767399085268 (change=10.139813817538217 %)
[2026-01-10 16:30:07] 2026-01-10 15:29:32,449 | INFO     | right removable region: 105
[2026-01-10 16:30:07] 2026-01-10 15:29:32,449 | INFO     | sum of square deviations: 369273382.1509438
[2026-01-10 16:30:07] 2026-01-10 15:29:32,450 | INFO     | sum of deviations: -32127008437.11321
[2026-01-10 16:30:07] 2026-01-10 15:29:32,450 | INFO     | mean x: 1768055612.8679245
[2026-01-10 16:30:07] 2026-01-10 15:29:32,450 | INFO     | mean y: 1684828.3490566039
[2026-01-10 16:30:07] 2026-01-10 15:29:32,450 | INFO     | intersect: 153823596554.10324
[2026-01-10 16:30:07] 2026-01-10 15:29:32,451 | INFO     | chi2: 38.98132238317539
[2026-01-10 16:30:07] 2026-01-10 15:29:32,451 | INFO     | current chi2=38.98132238317539 (change=19.691524868444095 %)
[2026-01-10 16:30:07] 2026-01-10 15:29:32,451 | INFO     | left removable region: 10
[2026-01-10 16:30:07] 2026-01-10 15:29:32,451 | INFO     | sum of square deviations: 265822656.989474
[2026-01-10 16:30:07] 2026-01-10 15:29:32,452 | INFO     | sum of deviations: -32381584962.71579
[2026-01-10 16:30:07] 2026-01-10 15:29:32,452 | INFO     | mean x: 1768055582.4105263
[2026-01-10 16:30:07] 2026-01-10 15:29:32,452 | INFO     | mean y: 1832992.9157894736
[2026-01-10 16:30:07] 2026-01-10 15:29:32,452 | INFO     | intersect: 215380170975.96246
[2026-01-10 16:30:07] 2026-01-10 15:29:32,453 | INFO     | chi2: 27.335575511370287
[2026-01-10 16:30:07] 2026-01-10 15:29:32,453 | INFO     | current memory leak: -121.82 B/s (using 95 data points, chi2=27.34)
[2026-01-10 16:30:07] 2026-01-10 15:29:32,453 | INFO     | could have reported an average CPU frequency of 1999 MHz (7 samples)
[2026-01-10 16:30:07] 2026-01-10 15:29:32,453 | INFO     | ..............................
[2026-01-10 16:30:07] 2026-01-10 15:29:32,454 | INFO     | . Timing measurements:
[2026-01-10 16:30:07] 2026-01-10 15:29:32,454 | INFO     | . get job = 0 s
[2026-01-10 16:30:07] 2026-01-10 15:29:32,454 | INFO     | . initial setup = 10 s
[2026-01-10 16:30:07] 2026-01-10 15:29:32,454 | INFO     | . payload setup = 191 s
[2026-01-10 16:30:07] 2026-01-10 15:29:32,454 | INFO     | . stage-in = 0 s
[2026-01-10 16:30:07] 2026-01-10 15:29:32,454 | INFO     | . payload execution = 6924 s
[2026-01-10 16:30:07] 2026-01-10 15:29:32,454 | INFO     | . stage-out = 3 s
[2026-01-10 16:30:07] 2026-01-10 15:29:32,454 | INFO     | . log creation = 1 s
[2026-01-10 16:30:07] 2026-01-10 15:29:32,454 | INFO     | ..............................
[2026-01-10 16:30:07] 2026-01-10 15:29:32,591 | INFO     | 
[2026-01-10 16:30:07] 2026-01-10 15:29:32,591 | INFO     | job summary report
[2026-01-10 16:30:07] 2026-01-10 15:29:32,592 | INFO     | --------------------------------------------------
[2026-01-10 16:30:07] 2026-01-10 15:29:32,592 | INFO     | PanDA job id: 6965383864
[2026-01-10 16:30:07] 2026-01-10 15:29:32,592 | INFO     | task id: 47962010
[2026-01-10 16:30:07] 2026-01-10 15:29:32,592 | INFO     | errors: (none)
[2026-01-10 16:30:07] 2026-01-10 15:29:32,592 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 16:30:07] 2026-01-10 15:29:32,592 | INFO     | pilot state: finished 
[2026-01-10 16:30:07] 2026-01-10 15:29:32,592 | INFO     | transexitcode: 0
[2026-01-10 16:30:07] 2026-01-10 15:29:32,592 | INFO     | exeerrorcode: 0
[2026-01-10 16:30:07] 2026-01-10 15:29:32,592 | INFO     | exeerrordiag: 
[2026-01-10 16:30:07] 2026-01-10 15:29:32,593 | INFO     | exitcode: 0
[2026-01-10 16:30:07] 2026-01-10 15:29:32,593 | INFO     | exitmsg: OK
[2026-01-10 16:30:07] 2026-01-10 15:29:32,593 | INFO     | cpuconsumptiontime: 20299 s
[2026-01-10 16:30:07] 2026-01-10 15:29:32,593 | INFO     | nevents: 50
[2026-01-10 16:30:07] 2026-01-10 15:29:32,593 | INFO     | neventsw: 0
[2026-01-10 16:30:07] 2026-01-10 15:29:32,593 | INFO     | pid: 31693
[2026-01-10 16:30:07] 2026-01-10 15:29:32,593 | INFO     | pgrp: 31693
[2026-01-10 16:30:07] 2026-01-10 15:29:32,593 | INFO     | corecount: 8
[2026-01-10 16:30:07] 2026-01-10 15:29:32,593 | INFO     | event service: False
[2026-01-10 16:30:07] 2026-01-10 15:29:32,593 | INFO     | sizes: {0: 2283741, 1: 2284426, 2: 2284625, 12: 2284625, 23: 2284653, 34: 2284681, 45: 2284837, 55: 2284865, 66: 2284893, 77: 2284921, 88: 2284977, 98: 2285285, 10
[2026-01-10 16:30:07] 2026-01-10 15:29:32,594 | INFO     | --------------------------------------------------
[2026-01-10 16:30:07] 2026-01-10 15:29:32,594 | INFO     | 
[2026-01-10 16:30:07] 2026-01-10 15:29:32,594 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-10 16:30:07] 2026-01-10 15:29:33,046 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,047 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,047 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,047 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,047 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,047 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,047 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,047 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,047 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,048 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,048 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,048 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,048 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,048 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,048 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,048 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,048 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,049 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 16:30:07] 2026-01-10 15:29:33,049 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,049 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 16:30:07] 2026-01-10 15:29:33,049 | INFO     | job 6965383864 has completed (purged errors)
[2026-01-10 16:30:07] 2026-01-10 15:29:33,049 | INFO     | overall cleanup function is called
[2026-01-10 16:30:07] 2026-01-10 15:29:34,071 | INFO     | --- collectZombieJob: --- 10, [31693]
[2026-01-10 16:30:07] 2026-01-10 15:29:34,072 | INFO     | zombie collector waiting for pid 31693
[2026-01-10 16:30:07] 2026-01-10 15:29:34,072 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 16:30:07] 2026-01-10 15:29:34,072 | INFO     | collected zombie processes
[2026-01-10 16:30:07] 2026-01-10 15:29:34,072 | INFO     | will attempt to kill all subprocesses of pid=31693
[2026-01-10 16:30:07] 2026-01-10 15:29:34,161 | INFO     | process IDs to be killed: [31693] (in reverse order)
[2026-01-10 16:30:07] 2026-01-10 15:29:34,823 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 16:30:07] 2026-01-10 15:29:34,823 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 16:30:07] 2026-01-10 15:29:34,825 | INFO     | did not find any defunct processes belonging to 31693
[2026-01-10 16:30:07] 2026-01-10 15:29:34,827 | INFO     | did not find any defunct processes belonging to 31693
[2026-01-10 16:30:07] 2026-01-10 15:29:34,827 | INFO     | ready for new job
[2026-01-10 16:30:07] 2026-01-10 15:29:34,828 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 16:30:07] 2026-01-10 15:29:34,829 | INFO     | ***************************************
[2026-01-10 16:30:07] 2026-01-10 15:29:34,830 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 16:30:07] 2026-01-10 15:29:34,830 | INFO     | ***************************************
[2026-01-10 16:30:07] 2026-01-10 15:29:34,830 | INFO     | 
[2026-01-10 16:30:07] 2026-01-10 15:29:34,836 | INFO     | pilot is running in a VM
[2026-01-10 16:30:07] 2026-01-10 15:29:34,837 | INFO     | architecture information:
[2026-01-10 16:30:07] 2026-01-10 15:29:34,846 | INFO     | executing command: cat /etc/os-release
[2026-01-10 16:30:07] 2026-01-10 15:29:34,971 | INFO     | cat /etc/os-release:
[2026-01-10 16:30:07] NAME="CentOS Linux"
[2026-01-10 16:30:07] VERSION="7 (Core)"
[2026-01-10 16:30:07] ID="centos"
[2026-01-10 16:30:07] ID_LIKE="rhel fedora"
[2026-01-10 16:30:07] VERSION_ID="7"
[2026-01-10 16:30:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 16:30:07] ANSI_COLOR="0;31"
[2026-01-10 16:30:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 16:30:07] HOME_URL="https://www.centos.org/"
[2026-01-10 16:30:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 16:30:07] 
[2026-01-10 16:30:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 16:30:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 16:30:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 16:30:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 16:30:07] 
[2026-01-10 16:30:07] 2026-01-10 15:29:34,972 | INFO     | ***************************************
[2026-01-10 16:30:07] 2026-01-10 15:29:35,476 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-10 16:30:07] 2026-01-10 15:29:35,677 | INFO     | sufficient remaining disk space (497426628608 B)
[2026-01-10 16:30:07] 2026-01-10 15:29:35,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 16:30:07] 2026-01-10 15:29:35,678 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 16:30:07] 2026-01-10 15:29:35,678 | INFO     | update_server=False
[2026-01-10 16:30:07] 2026-01-10 15:29:35,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 16:30:07] 2026-01-10 15:29:36,108 | INFO     | all job control threads have been joined
[2026-01-10 16:30:07] 2026-01-10 15:29:36,517 | INFO     | all data control threads have been joined
[2026-01-10 16:30:07] 2026-01-10 15:29:36,620 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:30:07] 2026-01-10 15:29:36,621 | INFO     | aborting loop
[2026-01-10 16:30:07] 2026-01-10 15:29:36,684 | INFO     | [job] retrieve thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:36,734 | INFO     | [data] copytool_in thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:36,860 | INFO     | all payload control threads have been joined
[2026-01-10 16:30:07] 2026-01-10 15:29:36,967 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:37,114 | INFO     | [job] control thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:37,140 | INFO     | [payload] failed_post thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:37,159 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:37,164 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 16:30:07] 2026-01-10 15:29:37,440 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:37,487 | INFO     | [payload] validate_post thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:37,523 | INFO     | [data] control thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:37,612 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:30:07] 2026-01-10 15:29:37,626 | INFO     | [job] job monitor thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:37,784 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:37,866 | INFO     | [payload] control thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:37,881 | INFO     | [job] validate thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:38,618 | INFO     | [job] queue monitor thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:38,782 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 16:30:07] 2026-01-10 15:29:39,171 | INFO     | [data] copytool_out thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:42,791 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 16:30:07] 2026-01-10 15:29:44,834 | INFO     | [monitor] cgroup control has ended
[2026-01-10 16:30:07] 2026-01-10 15:29:46,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139811512428352)>', '<ExcThread(monitor, started 139811209848576)>']
[2026-01-10 16:30:07] 2026-01-10 15:29:51,876 | INFO     | all workflow threads have been joined
[2026-01-10 16:30:07] 2026-01-10 15:29:51,877 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 16:30:07] 2026-01-10 15:29:51,877 | INFO     | traces error code: 0
[2026-01-10 16:30:07] 2026-01-10 15:29:51,877 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 16:30:07] 2026-01-10 15:30:04,319 | INFO     | PID=25209 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 16:30:07] 2026-01-10 15:30:04,319 | INFO     | .. there are 2 such processes running
[2026-01-10 16:30:07] 2026-01-10 15:30:04,320 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 16:30:07] 2026-01-10 15:30:04,320 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 16:30:07] 2026-01-10 15:30:04,320 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 16:30:07] 2026-01-10 15:30:04,320 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 16:30:07] 2026-01-10 15:30:04,320 | INFO     | [monitor] control thread has ended
[2026-01-10 16:30:07] 2026-01-10 15:30:04,663 [wrapper] ==== pilot stdout END ====
[2026-01-10 16:30:07] 2026-01-10 15:30:04,756 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 16:30:07] 2026-01-10 15:30:04,858 [wrapper] pilotpid: 25209
[2026-01-10 16:30:07] 2026-01-10 15:30:04,941 [wrapper] Pilot exit status: 0
[2026-01-10 16:30:07] 2026-01-10 15:30:05,361 [wrapper] pandaids: 6965383864
[2026-01-10 16:30:07] 2026-01-10 15:30:06,087 [wrapper] cleanup supervisor_pilot 24922 25210
[2026-01-10 16:30:07] 2026-01-10 15:30:06,109 [wrapper] Test setup, not cleaning
[2026-01-10 16:30:07] 2026-01-10 15:30:06,112 [wrapper] apfmon messages muted
[2026-01-10 16:30:07] 2026-01-10 15:30:06,115 [wrapper] ==== wrapper stdout END ====
[2026-01-10 16:30:07] 2026-01-10 15:30:06,119 [wrapper] ==== wrapper stderr END ====
[2026-01-10 16:30:07]  *** Error codes and diagnostics ***
[2026-01-10 16:30:07]     "exeErrorCode": 0,
[2026-01-10 16:30:07]     "exeErrorDiag": "",
[2026-01-10 16:30:07]     "pilotErrorCode": 0,
[2026-01-10 16:30:07]     "pilotErrorDiag": "",
[2026-01-10 16:30:07]  *** Listing of results directory ***
[2026-01-10 16:30:07] total 434540
[2026-01-10 16:30:07] -rw-r--r--. 1 boinc boinc      5112 Jan 10 14:13 queuedata.json
[2026-01-10 16:30:07] -rwx------. 1 boinc boinc     36322 Jan 10 14:14 runpilot2-wrapper.sh
[2026-01-10 16:30:07] -rw-r--r--. 1 boinc boinc    579449 Jan 10 14:14 pilot3.tar.gz
[2026-01-10 16:30:07] -rw-r--r--. 1 boinc boinc       100 Jan 10 14:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 16:30:07] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 14:21 run_atlas
[2026-01-10 16:30:07] -rw-r--r--. 1 boinc boinc       105 Jan 10 14:21 job.xml
[2026-01-10 16:30:07] -rw-r--r--. 1 boinc boinc      6391 Jan 10 14:21 init_data.xml
[2026-01-10 16:30:07] -rw-r--r--. 2 boinc boinc 391066744 Jan 10 14:21 EVNT.47962006._000045.pool.root.1
[2026-01-10 16:30:07] -rw-r--r--. 2 boinc boinc     15847 Jan 10 14:21 start_atlas.sh
[2026-01-10 16:30:07] drwxrwx--x. 2 boinc boinc        68 Jan 10 14:21 shared
[2026-01-10 16:30:07] -rw-r--r--. 2 boinc boinc    592619 Jan 10 14:21 input.tar.gz
[2026-01-10 16:30:07] -rw-r--r--. 1 boinc boinc         0 Jan 10 14:21 boinc_lockfile
[2026-01-10 16:30:07] -rw-r--r--. 1 boinc boinc      2890 Jan 10 14:21 pandaJob.out
[2026-01-10 16:30:07] -rw-------. 1 boinc boinc    989556 Jan 10 14:25 agis_schedconf.cvmfs.json
[2026-01-10 16:30:07] -rw-------. 1 boinc boinc   1516240 Jan 10 14:25 agis_ddmendpoints.agis.ALL.json
[2026-01-10 16:30:07] drwx------. 5 boinc boinc      4096 Jan 10 14:25 pilot3
[2026-01-10 16:30:07] -rw-r--r--. 1 boinc boinc       530 Jan 10 15:52 boinc_task_state.xml
[2026-01-10 16:30:07] -rw-------. 1 boinc boinc  45455207 Jan 10 16:26 HITS.47962010._002005.pool.root.1
[2026-01-10 16:30:07] -rw-------. 1 boinc boinc      1025 Jan 10 16:27 memory_monitor_summary.json
[2026-01-10 16:30:07] -rw-------. 1 boinc boinc   1242827 Jan 10 16:27 log.47962010._002005.job.log.tgz.1
[2026-01-10 16:30:07] -rw-------. 1 boinc boinc        95 Jan 10 16:29 pilot_heartbeat.json
[2026-01-10 16:30:07] -rw-------. 1 boinc boinc      7907 Jan 10 16:29 heartbeat.json
[2026-01-10 16:30:07] -rw-r--r--. 1 boinc boinc      8192 Jan 10 16:29 boinc_mmap_file
[2026-01-10 16:30:07] -rw-r--r--. 1 boinc boinc        27 Jan 10 16:29 wrapper_checkpoint.txt
[2026-01-10 16:30:07] -rw-------. 1 boinc boinc       820 Jan 10 16:30 pilotlog.txt
[2026-01-10 16:30:07] -rw-------. 1 boinc boinc   1034139 Jan 10 16:30 log.47962010._002005.job.log.1
[2026-01-10 16:30:07] -rw-------. 1 boinc boinc       353 Jan 10 16:30 output.list
[2026-01-10 16:30:07] -rw-r--r--. 1 boinc boinc       620 Jan 10 16:30 runtime_log
[2026-01-10 16:30:07] -rw-------. 1 boinc boinc   2293760 Jan 10 16:30 result.tar.gz
[2026-01-10 16:30:07] -rw-------. 1 boinc boinc       654 Jan 10 16:30 txNNDmDyny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7mmKDm1AcU6n.diag
[2026-01-10 16:30:07] -rw-r--r--. 1 boinc boinc      8816 Jan 10 16:30 runtime_log.err
[2026-01-10 16:30:07] -rw-r--r--. 1 boinc boinc     21401 Jan 10 16:30 stderr.txt
[2026-01-10 16:30:07] HITS file was successfully produced:
[2026-01-10 16:30:07] -rw-------. 1 boinc boinc 45455207 Jan 10 16:26 shared/HITS.pool.root.1
[2026-01-10 16:30:07]  *** Contents of shared directory: ***
[2026-01-10 16:30:07] total 429132
[2026-01-10 16:30:07] -rw-r--r--. 2 boinc boinc 391066744 Jan 10 14:21 ATLAS.root_0
[2026-01-10 16:30:07] -rw-r--r--. 2 boinc boinc     15847 Jan 10 14:21 start_atlas.sh
[2026-01-10 16:30:07] -rw-r--r--. 2 boinc boinc    592619 Jan 10 14:21 input.tar.gz
[2026-01-10 16:30:07] -rw-------. 1 boinc boinc  45455207 Jan 10 16:26 HITS.pool.root.1
[2026-01-10 16:30:07] -rw-------. 1 boinc boinc   2293760 Jan 10 16:30 result.tar.gz
16:30:09 (21237): run_atlas exited; CPU time 20322.810196
16:30:09 (21237): called boinc_finish(0)

</stderr_txt>
]]>

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