Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:30:12 (27173): wrapper (7.7.26015): starting
16:30:12 (27173): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 16:30:12] Arguments: --nthreads 8
[2026-01-10 16:30:12] Threads: 8
[2026-01-10 16:30:12] Checking for CVMFS
[2026-01-10 16:30:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 16:30:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 16:30:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 16:30:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 16:30:16] 2.11.2.0 25330 37014 130044 154984 2 84 17459297 25165825 96 130560 0 16950239 99.797 11273030 3527 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 16:30:16] CVMFS is ok
[2026-01-10 16:30:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 16:30:16] Checking for apptainer binary...
[2026-01-10 16:30:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 16:30:16] Running /usr/bin/apptainer --version
[2026-01-10 16:30:16] apptainer version 1.3.2-1.el7
[2026-01-10 16:30:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 16:30:39] cg-vwn437.simple-grid.lan
[2026-01-10 16:30:39] apptainer works
[2026-01-10 16:30:39] Set ATHENA_PROC_NUMBER=8
[2026-01-10 16:30:39] Set ATHENA_CORE_NUMBER=8
[2026-01-10 16:30:39] Starting ATLAS job with PandaID=6965383912
[2026-01-10 16:30:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 18:59:16]  *** The last 200 lines of the pilot log: ***
[2026-01-10 18:59:16] 2026-01-10 17:58:25,761 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:59:16] 2026-01-10 17:58:27,354 | INFO     | time since job start (8620s) is within the limit (349056.0s)
[2026-01-10 18:59:16] 2026-01-10 17:58:28,269 | INFO     | monitor loop #699: job 0:6965383912 is in state 'finished'
[2026-01-10 18:59:16] 2026-01-10 17:58:28,270 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:59:16] 2026-01-10 17:58:28,532 | INFO     | PID=30892 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 18:59:16] 2026-01-10 17:58:28,532 | INFO     | .. there are 2 such processes running
[2026-01-10 18:59:16] 2026-01-10 17:58:29,533 | INFO     | time since job start (8622s) is within the limit (349056.0s)
[2026-01-10 18:59:16] 2026-01-10 17:58:30,779 | INFO     | monitor loop #700: job 0:6965383912 is in state 'finished'
[2026-01-10 18:59:16] 2026-01-10 17:58:30,780 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:59:16] 2026-01-10 17:58:31,542 | INFO     | time since job start (8624s) is within the limit (349056.0s)
[2026-01-10 18:59:16] 2026-01-10 17:58:33,288 | INFO     | monitor loop #701: job 0:6965383912 is in state 'finished'
[2026-01-10 18:59:16] 2026-01-10 17:58:33,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:59:16] 2026-01-10 17:58:33,549 | INFO     | time since job start (8626s) is within the limit (349056.0s)
[2026-01-10 18:59:16] 2026-01-10 17:58:35,557 | INFO     | time since job start (8628s) is within the limit (349056.0s)
[2026-01-10 18:59:16] 2026-01-10 17:58:35,795 | INFO     | monitor loop #702: job 0:6965383912 is in state 'finished'
[2026-01-10 18:59:16] 2026-01-10 17:58:35,796 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:59:16] 2026-01-10 17:58:37,565 | INFO     | time since job start (8630s) is within the limit (349056.0s)
[2026-01-10 18:59:16] 2026-01-10 17:58:38,166 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 18:59:16] 2026-01-10 17:58:38,167 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-10 18:59:16] 2026-01-10 17:58:38,169 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6965383912/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 18:59:16] 2026-01-10 17:58:38,170 | INFO     | extracted standard info from prmon json
[2026-01-10 18:59:16] 2026-01-10 17:58:38,170 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 18:59:16] 2026-01-10 17:58:38,170 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 18:59:16] 2026-01-10 17:58:38,173 | INFO     | fitting pss+swap vs Time
[2026-01-10 18:59:16] 2026-01-10 17:58:38,174 | INFO     | sum of square deviations: 697042535.7862587
[2026-01-10 18:59:16] 2026-01-10 17:58:38,175 | INFO     | sum of deviations: 34887173907.37404
[2026-01-10 18:59:16] 2026-01-10 17:58:38,175 | INFO     | mean x: 1768063813.6946564
[2026-01-10 18:59:16] 2026-01-10 17:58:38,175 | INFO     | mean y: 1827159.5343511452
[2026-01-10 18:59:16] 2026-01-10 17:58:38,175 | INFO     | intersect: -88490261315.55817
[2026-01-10 18:59:16] 2026-01-10 17:58:38,176 | INFO     | chi2: 37.79187793737208
[2026-01-10 18:59:16] 2026-01-10 17:58:38,176 | INFO     | sum of square deviations: 620259545.7777768
[2026-01-10 18:59:16] 2026-01-10 17:58:38,186 | INFO     | sum of deviations: 62299255765.88888
[2026-01-10 18:59:16] 2026-01-10 17:58:38,186 | INFO     | mean x: 1768063661.2222223
[2026-01-10 18:59:16] 2026-01-10 17:58:38,186 | INFO     | mean y: 1881587.5396825396
[2026-01-10 18:59:16] 2026-01-10 17:58:38,186 | INFO     | intersect: -177583535663.45212
[2026-01-10 18:59:16] 2026-01-10 17:58:38,187 | INFO     | chi2: 32.51116752306506
[2026-01-10 18:59:16] 2026-01-10 17:58:38,187 | INFO     | current chi2=32.51116752306506 (change=13.973135770225817 %)
[2026-01-10 18:59:16] 2026-01-10 17:58:38,187 | INFO     | right removable region: 125
[2026-01-10 18:59:16] 2026-01-10 17:58:38,187 | INFO     | sum of square deviations: 620204035.7777768
[2026-01-10 18:59:16] 2026-01-10 17:58:38,188 | INFO     | sum of deviations: -1491964867.0000334
[2026-01-10 18:59:16] 2026-01-10 17:58:38,188 | INFO     | mean x: 1768063966.2222223
[2026-01-10 18:59:16] 2026-01-10 17:58:38,188 | INFO     | mean y: 1899404.4285714286
[2026-01-10 18:59:16] 2026-01-10 17:58:38,188 | INFO     | intersect: 4255159892.977637
[2026-01-10 18:59:16] 2026-01-10 17:58:38,189 | INFO     | chi2: 30.24618338592476
[2026-01-10 18:59:16] 2026-01-10 17:58:38,189 | INFO     | current chi2=30.24618338592476 (change=19.96644507571677 %)
[2026-01-10 18:59:16] 2026-01-10 17:58:38,189 | INFO     | left removable region: 10
[2026-01-10 18:59:16] 2026-01-10 17:58:38,189 | INFO     | sum of square deviations: 471527722.99130577
[2026-01-10 18:59:16] 2026-01-10 17:58:38,190 | INFO     | sum of deviations: 688749712.3826122
[2026-01-10 18:59:16] 2026-01-10 17:58:38,190 | INFO     | mean x: 1768063935.7913043
[2026-01-10 18:59:16] 2026-01-10 17:58:38,190 | INFO     | mean y: 2048545.1826086957
[2026-01-10 18:59:16] 2026-01-10 17:58:38,190 | INFO     | intersect: -2580521827.403488
[2026-01-10 18:59:16] 2026-01-10 17:58:38,191 | INFO     | chi2: 18.937966479002075
[2026-01-10 18:59:16] 2026-01-10 17:58:38,191 | INFO     | current memory leak: 1.46 B/s (using 115 data points, chi2=18.94)
[2026-01-10 18:59:16] 2026-01-10 17:58:38,191 | INFO     | could have reported an average CPU frequency of 1999 MHz (8 samples)
[2026-01-10 18:59:16] 2026-01-10 17:58:38,192 | INFO     | ..............................
[2026-01-10 18:59:16] 2026-01-10 17:58:38,192 | INFO     | . Timing measurements:
[2026-01-10 18:59:16] 2026-01-10 17:58:38,192 | INFO     | . get job = 0 s
[2026-01-10 18:59:16] 2026-01-10 17:58:38,192 | INFO     | . initial setup = 11 s
[2026-01-10 18:59:16] 2026-01-10 17:58:38,192 | INFO     | . payload setup = 183 s
[2026-01-10 18:59:16] 2026-01-10 17:58:38,192 | INFO     | . stage-in = 0 s
[2026-01-10 18:59:16] 2026-01-10 17:58:38,192 | INFO     | . payload execution = 8116 s
[2026-01-10 18:59:16] 2026-01-10 17:58:38,193 | INFO     | . stage-out = 3 s
[2026-01-10 18:59:16] 2026-01-10 17:58:38,193 | INFO     | . log creation = 1 s
[2026-01-10 18:59:16] 2026-01-10 17:58:38,193 | INFO     | ..............................
[2026-01-10 18:59:16] 2026-01-10 17:58:38,356 | INFO     | 
[2026-01-10 18:59:16] 2026-01-10 17:58:38,357 | INFO     | job summary report
[2026-01-10 18:59:16] 2026-01-10 17:58:38,357 | INFO     | --------------------------------------------------
[2026-01-10 18:59:16] 2026-01-10 17:58:38,357 | INFO     | PanDA job id: 6965383912
[2026-01-10 18:59:16] 2026-01-10 17:58:38,357 | INFO     | task id: 47962010
[2026-01-10 18:59:16] 2026-01-10 17:58:38,357 | INFO     | errors: (none)
[2026-01-10 18:59:16] 2026-01-10 17:58:38,357 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 18:59:16] 2026-01-10 17:58:38,357 | INFO     | pilot state: finished 
[2026-01-10 18:59:16] 2026-01-10 17:58:38,357 | INFO     | transexitcode: 0
[2026-01-10 18:59:16] 2026-01-10 17:58:38,358 | INFO     | exeerrorcode: 0
[2026-01-10 18:59:16] 2026-01-10 17:58:38,358 | INFO     | exeerrordiag: 
[2026-01-10 18:59:16] 2026-01-10 17:58:38,358 | INFO     | exitcode: 0
[2026-01-10 18:59:16] 2026-01-10 17:58:38,358 | INFO     | exitmsg: OK
[2026-01-10 18:59:16] 2026-01-10 17:58:38,358 | INFO     | cpuconsumptiontime: 20049 s
[2026-01-10 18:59:16] 2026-01-10 17:58:38,358 | INFO     | nevents: 50
[2026-01-10 18:59:16] 2026-01-10 17:58:38,358 | INFO     | neventsw: 0
[2026-01-10 18:59:16] 2026-01-10 17:58:38,358 | INFO     | pid: 4955
[2026-01-10 18:59:16] 2026-01-10 17:58:38,358 | INFO     | pgrp: 4955
[2026-01-10 18:59:16] 2026-01-10 17:58:38,358 | INFO     | corecount: 8
[2026-01-10 18:59:16] 2026-01-10 17:58:38,358 | INFO     | event service: False
[2026-01-10 18:59:16] 2026-01-10 17:58:38,359 | INFO     | sizes: {0: 2283741, 1: 2284426, 2: 2284625, 12: 2284625, 23: 2284653, 34: 2284681, 45: 2284837, 55: 2284865, 66: 2284893, 77: 2284921, 87: 2284977, 98: 2285285, 10
[2026-01-10 18:59:16] 2026-01-10 17:58:38,359 | INFO     | --------------------------------------------------
[2026-01-10 18:59:16] 2026-01-10 17:58:38,359 | INFO     | 
[2026-01-10 18:59:16] 2026-01-10 17:58:38,359 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-10 18:59:16] 2026-01-10 17:58:38,910 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,911 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,911 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,911 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,911 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,911 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,911 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,911 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,911 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,912 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,912 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,912 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,912 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,912 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,912 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,912 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,912 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,912 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 18:59:16] 2026-01-10 17:58:38,913 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,913 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 18:59:16] 2026-01-10 17:58:38,913 | INFO     | job 6965383912 has completed (purged errors)
[2026-01-10 18:59:16] 2026-01-10 17:58:38,913 | INFO     | overall cleanup function is called
[2026-01-10 18:59:16] 2026-01-10 17:58:39,933 | INFO     | --- collectZombieJob: --- 10, [4955]
[2026-01-10 18:59:16] 2026-01-10 17:58:39,934 | INFO     | zombie collector waiting for pid 4955
[2026-01-10 18:59:16] 2026-01-10 17:58:39,934 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 18:59:16] 2026-01-10 17:58:39,934 | INFO     | collected zombie processes
[2026-01-10 18:59:16] 2026-01-10 17:58:39,934 | INFO     | will attempt to kill all subprocesses of pid=4955
[2026-01-10 18:59:16] 2026-01-10 17:58:40,029 | INFO     | process IDs to be killed: [4955] (in reverse order)
[2026-01-10 18:59:16] 2026-01-10 17:58:41,141 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 18:59:16] 2026-01-10 17:58:41,141 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 18:59:16] 2026-01-10 17:58:41,144 | INFO     | did not find any defunct processes belonging to 4955
[2026-01-10 18:59:16] 2026-01-10 17:58:41,149 | INFO     | did not find any defunct processes belonging to 4955
[2026-01-10 18:59:16] 2026-01-10 17:58:41,149 | INFO     | ready for new job
[2026-01-10 18:59:16] 2026-01-10 17:58:41,149 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 18:59:16] 2026-01-10 17:58:41,151 | INFO     | ***************************************
[2026-01-10 18:59:16] 2026-01-10 17:58:41,151 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 18:59:16] 2026-01-10 17:58:41,151 | INFO     | ***************************************
[2026-01-10 18:59:16] 2026-01-10 17:58:41,151 | INFO     | 
[2026-01-10 18:59:16] 2026-01-10 17:58:41,152 | INFO     | pilot is running in a VM
[2026-01-10 18:59:16] 2026-01-10 17:58:41,152 | INFO     | architecture information:
[2026-01-10 18:59:16] 2026-01-10 17:58:41,167 | INFO     | executing command: cat /etc/os-release
[2026-01-10 18:59:16] 2026-01-10 17:58:41,432 | INFO     | cat /etc/os-release:
[2026-01-10 18:59:16] NAME="CentOS Linux"
[2026-01-10 18:59:16] VERSION="7 (Core)"
[2026-01-10 18:59:16] ID="centos"
[2026-01-10 18:59:16] ID_LIKE="rhel fedora"
[2026-01-10 18:59:16] VERSION_ID="7"
[2026-01-10 18:59:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 18:59:16] ANSI_COLOR="0;31"
[2026-01-10 18:59:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 18:59:16] HOME_URL="https://www.centos.org/"
[2026-01-10 18:59:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 18:59:16] 
[2026-01-10 18:59:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 18:59:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 18:59:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 18:59:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 18:59:16] 
[2026-01-10 18:59:16] 2026-01-10 17:58:41,432 | INFO     | ***************************************
[2026-01-10 18:59:16] 2026-01-10 17:58:41,936 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-10 18:59:16] 2026-01-10 17:58:42,233 | INFO     | sufficient remaining disk space (497678286848 B)
[2026-01-10 18:59:16] 2026-01-10 17:58:42,233 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 18:59:16] 2026-01-10 17:58:42,234 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 18:59:16] 2026-01-10 17:58:42,234 | INFO     | update_server=False
[2026-01-10 18:59:16] 2026-01-10 17:58:42,234 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 18:59:16] 2026-01-10 17:58:42,234 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 18:59:16] 2026-01-10 17:58:42,234 | INFO     | aborting loop
[2026-01-10 18:59:16] 2026-01-10 17:58:42,335 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 18:59:16] 2026-01-10 17:58:42,745 | INFO     | all data control threads have been joined
[2026-01-10 18:59:16] 2026-01-10 17:58:42,843 | INFO     | all payload control threads have been joined
[2026-01-10 18:59:16] 2026-01-10 17:58:42,876 | INFO     | all job control threads have been joined
[2026-01-10 18:59:16] 2026-01-10 17:58:43,240 | INFO     | [job] retrieve thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:58:43,240 | INFO     | [job] job monitor thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:58:43,355 | INFO     | [data] copytool_in thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:58:43,375 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 18:59:16] 2026-01-10 17:58:43,605 | INFO     | [payload] failed_post thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:58:43,737 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:58:43,751 | INFO     | [data] control thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:58:43,849 | INFO     | [payload] control thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:58:43,882 | INFO     | [job] control thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:58:44,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 18:59:16] 2026-01-10 17:58:44,221 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:58:44,254 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:58:44,300 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:58:44,342 | INFO     | [data] copytool_out thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:58:44,381 | INFO     | [job] queue monitor thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:58:44,437 | INFO     | [job] validate thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:58:44,636 | INFO     | [payload] validate_post thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:58:48,131 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 18:59:16] 2026-01-10 17:59:00,778 | INFO     | [monitor] cgroup control has ended
[2026-01-10 18:59:16] 2026-01-10 17:59:02,199 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140231462627136)>', '<ExcThread(monitor, started 140230875145984)>']
[2026-01-10 18:59:16] 2026-01-10 17:59:07,225 | INFO     | all workflow threads have been joined
[2026-01-10 18:59:16] 2026-01-10 17:59:07,226 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 18:59:16] 2026-01-10 17:59:07,226 | INFO     | traces error code: 0
[2026-01-10 18:59:16] 2026-01-10 17:59:07,226 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 18:59:16] 2026-01-10 17:59:10,705 | INFO     | PID=30892 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 18:59:16] 2026-01-10 17:59:10,705 | INFO     | .. there are 2 such processes running
[2026-01-10 18:59:16] 2026-01-10 17:59:10,707 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 18:59:16] 2026-01-10 17:59:10,707 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 18:59:16] 2026-01-10 17:59:10,707 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 18:59:16] 2026-01-10 17:59:10,707 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 18:59:16] 2026-01-10 17:59:10,707 | INFO     | [monitor] control thread has ended
[2026-01-10 18:59:16] 2026-01-10 17:59:11,021 [wrapper] ==== pilot stdout END ====
[2026-01-10 18:59:16] 2026-01-10 17:59:11,138 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 18:59:16] 2026-01-10 17:59:11,223 [wrapper] pilotpid: 30892
[2026-01-10 18:59:16] 2026-01-10 17:59:11,298 [wrapper] Pilot exit status: 0
[2026-01-10 18:59:16] 2026-01-10 17:59:11,665 [wrapper] pandaids: 6965383912
[2026-01-10 18:59:16] 2026-01-10 17:59:12,647 [wrapper] cleanup supervisor_pilot 22064 30893
[2026-01-10 18:59:16] 2026-01-10 17:59:12,716 [wrapper] Test setup, not cleaning
[2026-01-10 18:59:16] 2026-01-10 17:59:12,843 [wrapper] apfmon messages muted
[2026-01-10 18:59:16] 2026-01-10 17:59:12,979 [wrapper] ==== wrapper stdout END ====
[2026-01-10 18:59:16] 2026-01-10 17:59:13,061 [wrapper] ==== wrapper stderr END ====
[2026-01-10 18:59:16]  *** Error codes and diagnostics ***
[2026-01-10 18:59:16]     "exeErrorCode": 0,
[2026-01-10 18:59:16]     "exeErrorDiag": "",
[2026-01-10 18:59:16]     "pilotErrorCode": 0,
[2026-01-10 18:59:16]     "pilotErrorDiag": "",
[2026-01-10 18:59:16]  *** Listing of results directory ***
[2026-01-10 18:59:16] total 437256
[2026-01-10 18:59:16] -rw-r--r--. 1 boinc boinc      5112 Jan 10 14:13 queuedata.json
[2026-01-10 18:59:16] -rw-r--r--. 1 boinc boinc    579449 Jan 10 14:14 pilot3.tar.gz
[2026-01-10 18:59:16] -rwx------. 1 boinc boinc     36322 Jan 10 14:14 runpilot2-wrapper.sh
[2026-01-10 18:59:16] -rw-r--r--. 1 boinc boinc       100 Jan 10 16:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 18:59:16] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 16:30 run_atlas
[2026-01-10 18:59:16] -rw-r--r--. 1 boinc boinc       105 Jan 10 16:30 job.xml
[2026-01-10 18:59:16] -rw-r--r--. 1 boinc boinc      6391 Jan 10 16:30 init_data.xml
[2026-01-10 18:59:16] -rw-r--r--. 2 boinc boinc 394716078 Jan 10 16:30 EVNT.47962006._000049.pool.root.1
[2026-01-10 18:59:16] -rw-r--r--. 2 boinc boinc     15847 Jan 10 16:30 start_atlas.sh
[2026-01-10 18:59:16] drwxrwx--x. 2 boinc boinc        68 Jan 10 16:30 shared
[2026-01-10 18:59:16] -rw-r--r--. 2 boinc boinc    592614 Jan 10 16:30 input.tar.gz
[2026-01-10 18:59:16] -rw-r--r--. 1 boinc boinc         0 Jan 10 16:30 boinc_lockfile
[2026-01-10 18:59:16] -rw-r--r--. 1 boinc boinc      2890 Jan 10 16:30 pandaJob.out
[2026-01-10 18:59:16] -rw-------. 1 boinc boinc    989556 Jan 10 16:34 agis_schedconf.cvmfs.json
[2026-01-10 18:59:16] -rw-------. 1 boinc boinc   1516240 Jan 10 16:34 agis_ddmendpoints.agis.ALL.json
[2026-01-10 18:59:16] drwx------. 5 boinc boinc      4096 Jan 10 16:34 pilot3
[2026-01-10 18:59:16] -rw-r--r--. 1 boinc boinc       529 Jan 10 18:25 boinc_task_state.xml
[2026-01-10 18:59:16] -rw-------. 1 boinc boinc  44234618 Jan 10 18:55 HITS.47962010._002053.pool.root.1
[2026-01-10 18:59:16] -rw-------. 1 boinc boinc      1017 Jan 10 18:56 memory_monitor_summary.json
[2026-01-10 18:59:16] -rw-------. 1 boinc boinc   1260494 Jan 10 18:56 log.47962010._002053.job.log.tgz.1
[2026-01-10 18:59:16] -rw-------. 1 boinc boinc      8576 Jan 10 18:58 heartbeat.json
[2026-01-10 18:59:16] -rw-r--r--. 1 boinc boinc      8192 Jan 10 18:59 boinc_mmap_file
[2026-01-10 18:59:16] -rw-r--r--. 1 boinc boinc        27 Jan 10 18:59 wrapper_checkpoint.txt
[2026-01-10 18:59:16] -rw-------. 1 boinc boinc        95 Jan 10 18:59 pilot_heartbeat.json
[2026-01-10 18:59:16] -rw-------. 1 boinc boinc       820 Jan 10 18:59 pilotlog.txt
[2026-01-10 18:59:16] -rw-------. 1 boinc boinc   1187978 Jan 10 18:59 log.47962010._002053.job.log.1
[2026-01-10 18:59:16] -rw-------. 1 boinc boinc       353 Jan 10 18:59 output.list
[2026-01-10 18:59:16] -rw-r--r--. 1 boinc boinc       620 Jan 10 18:59 runtime_log
[2026-01-10 18:59:16] -rw-------. 1 boinc boinc   2467840 Jan 10 18:59 result.tar.gz
[2026-01-10 18:59:16] -rw-r--r--. 1 boinc boinc      8816 Jan 10 18:59 runtime_log.err
[2026-01-10 18:59:16] -rw-------. 1 boinc boinc       654 Jan 10 18:59 KIUMDmNyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXXhKDmKA2xwm.diag
[2026-01-10 18:59:16] -rw-r--r--. 1 boinc boinc     21332 Jan 10 18:59 stderr.txt
[2026-01-10 18:59:16] HITS file was successfully produced:
[2026-01-10 18:59:16] -rw-------. 1 boinc boinc 44234618 Jan 10 18:55 shared/HITS.pool.root.1
[2026-01-10 18:59:16]  *** Contents of shared directory: ***
[2026-01-10 18:59:16] total 431676
[2026-01-10 18:59:16] -rw-r--r--. 2 boinc boinc 394716078 Jan 10 16:30 ATLAS.root_0
[2026-01-10 18:59:16] -rw-r--r--. 2 boinc boinc     15847 Jan 10 16:30 start_atlas.sh
[2026-01-10 18:59:16] -rw-r--r--. 2 boinc boinc    592614 Jan 10 16:30 input.tar.gz
[2026-01-10 18:59:16] -rw-------. 1 boinc boinc  44234618 Jan 10 18:55 HITS.pool.root.1
[2026-01-10 18:59:16] -rw-------. 1 boinc boinc   2467840 Jan 10 18:59 result.tar.gz
18:59:18 (27173): run_atlas exited; CPU time 20075.499335
18:59:18 (27173): called boinc_finish(0)

</stderr_txt>
]]>

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