Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:32:00 (3996761): wrapper (7.7.26015): starting
10:32:00 (3996761): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 10:32:00] Arguments: --nthreads 12
[2026-01-10 10:32:00] Threads: 12
[2026-01-10 10:32:00] Checking for CVMFS
[2026-01-10 10:32:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 10:32:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 10:32:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 10:32:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 10:32:01] 2.13.3.0 10228 25680 200332 154984 2 317 23715091 32935937 16114 16776704 0 109183225 99.838 61450570 32914 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 10:32:01] CVMFS is ok
[2026-01-10 10:32:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 10:32:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 10:32:01] Further information can be found at the LHC@home message board.
[2026-01-10 10:32:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 10:32:01] Checking for apptainer binary...
[2026-01-10 10:32:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 10:32:01] Running /usr/bin/apptainer --version
[2026-01-10 10:32:01] apptainer version 1.4.5-2.el9
[2026-01-10 10:32:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 10:32:01] c-8-1.aglt2.org
[2026-01-10 10:32:01] apptainer works
[2026-01-10 10:32:01] Set ATHENA_PROC_NUMBER=12
[2026-01-10 10:32:01] Set ATHENA_CORE_NUMBER=12
[2026-01-10 10:32:01] Starting ATLAS job with PandaID=6965383894
[2026-01-10 10:32:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:49:05 (75566): wrapper (7.7.26015): starting
11:49:05 (75566): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 11:49:05] Arguments: --nthreads 12
[2026-01-10 11:49:05] Threads: 12
[2026-01-10 11:49:05] This job has been restarted, cleaning up previous attempt
[2026-01-10 11:49:05] Checking for CVMFS
[2026-01-10 11:49:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 11:49:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 11:49:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 11:49:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 11:49:07] 2.13.3.0 10228 25758 197360 154986 1 250 24564591 32935936 17173 16776704 0 109430389 99.838 61648589 32893 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 11:49:07] CVMFS is ok
[2026-01-10 11:49:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 11:49:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 11:49:07] Further information can be found at the LHC@home message board.
[2026-01-10 11:49:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 11:49:07] Checking for apptainer binary...
[2026-01-10 11:49:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 11:49:07] Running /usr/bin/apptainer --version
[2026-01-10 11:49:08] apptainer version 1.4.5-2.el9
[2026-01-10 11:49:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 11:49:09] c-8-1.aglt2.org
[2026-01-10 11:49:09] apptainer works
[2026-01-10 11:49:09] Set ATHENA_PROC_NUMBER=12
[2026-01-10 11:49:09] Set ATHENA_CORE_NUMBER=12
[2026-01-10 11:49:09] Starting ATLAS job with PandaID=6965383894
[2026-01-10 11:49:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 16:09:30]  *** The last 200 lines of the pilot log: ***
[2026-01-10 16:09:30] 2026-01-10 21:08:48,642 | INFO     | monitor loop #964: job 0:6965383894 is in state 'finished'
[2026-01-10 16:09:30] 2026-01-10 21:08:48,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 16:09:30] 2026-01-10 21:08:49,756 | INFO     | PID=80909 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 16:09:30] 2026-01-10 21:08:49,756 | INFO     | .. there are 27 such processes running
[2026-01-10 16:09:30] 2026-01-10 21:08:49,822 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 16:09:30] 2026-01-10 21:08:49,851 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1739
[2026-01-10 16:09:30] 2026-01-10 21:08:49,875 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965383894/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 16:09:30] 2026-01-10 21:08:49,876 | INFO     | extracted standard info from prmon json
[2026-01-10 16:09:30] 2026-01-10 21:08:49,876 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 16:09:30] 2026-01-10 21:08:49,876 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 16:09:30] 2026-01-10 21:08:49,885 | INFO     | fitting pss+swap vs Time
[2026-01-10 16:09:30] 2026-01-10 21:08:49,886 | INFO     | sum of square deviations: 4961990650.857139
[2026-01-10 16:09:30] 2026-01-10 21:08:49,903 | INFO     | sum of deviations: 30751175262.999893
[2026-01-10 16:09:30] 2026-01-10 21:08:49,903 | INFO     | mean x: 1768071583.857143
[2026-01-10 16:09:30] 2026-01-10 21:08:49,903 | INFO     | mean y: 2821932.388888889
[2026-01-10 16:09:30] 2026-01-10 21:08:49,903 | INFO     | intersect: -10954530263.212053
[2026-01-10 16:09:30] 2026-01-10 21:08:49,904 | INFO     | chi2: 10.901823564475686
[2026-01-10 16:09:30] 2026-01-10 21:08:49,904 | INFO     | sum of square deviations: 4672622177.514192
[2026-01-10 16:09:30] 2026-01-10 21:08:49,906 | INFO     | sum of deviations: 117348632006.82205
[2026-01-10 16:09:30] 2026-01-10 21:08:49,906 | INFO     | mean x: 1768071431.4048584
[2026-01-10 16:09:30] 2026-01-10 21:08:49,916 | INFO     | mean y: 2867546.4817813765
[2026-01-10 16:09:30] 2026-01-10 21:08:49,917 | INFO     | intersect: -44400629223.30893
[2026-01-10 16:09:30] 2026-01-10 21:08:49,917 | INFO     | chi2: 7.302796145443821
[2026-01-10 16:09:30] 2026-01-10 21:08:49,917 | INFO     | current chi2=7.302796145443821 (change=33.01307710353646 %)
[2026-01-10 16:09:30] 2026-01-10 21:08:49,918 | INFO     | sum of square deviations: 4394697221.190099
[2026-01-10 16:09:30] 2026-01-10 21:08:49,919 | INFO     | sum of deviations: 163943552941.6281
[2026-01-10 16:09:30] 2026-01-10 21:08:49,919 | INFO     | mean x: 1768071278.9421487
[2026-01-10 16:09:30] 2026-01-10 21:08:49,920 | INFO     | mean y: 2892988.3305785125
[2026-01-10 16:09:30] 2026-01-10 21:08:49,920 | INFO     | intersect: -65954753860.73453
[2026-01-10 16:09:30] 2026-01-10 21:08:49,920 | INFO     | chi2: 5.908442932073106
[2026-01-10 16:09:30] 2026-01-10 21:08:49,939 | INFO     | current chi2=5.908442932073106 (change=19.09341553016848 %)
[2026-01-10 16:09:30] 2026-01-10 21:08:49,940 | INFO     | right removable region: 241
[2026-01-10 16:09:30] 2026-01-10 21:08:49,940 | INFO     | sum of square deviations: 4672259837.514192
[2026-01-10 16:09:30] 2026-01-10 21:08:49,942 | INFO     | sum of deviations: -60807818304.08096
[2026-01-10 16:09:30] 2026-01-10 21:08:49,942 | INFO     | mean x: 1768071736.4048584
[2026-01-10 16:09:30] 2026-01-10 21:08:49,942 | INFO     | mean y: 2870078.4008097164
[2026-01-10 16:09:30] 2026-01-10 21:08:49,942 | INFO     | intersect: 23013701803.26654
[2026-01-10 16:09:30] 2026-01-10 21:08:49,943 | INFO     | chi2: 7.220366481847301
[2026-01-10 16:09:30] 2026-01-10 21:08:49,943 | INFO     | current chi2=7.220366481847301 (change=33.7691860527321 %)
[2026-01-10 16:09:30] 2026-01-10 21:08:49,949 | INFO     | sum of square deviations: 4394137037.508252
[2026-01-10 16:09:30] 2026-01-10 21:08:49,951 | INFO     | sum of deviations: -94243939657.73973
[2026-01-10 16:09:30] 2026-01-10 21:08:49,951 | INFO     | mean x: 1768071888.9214876
[2026-01-10 16:09:30] 2026-01-10 21:08:49,951 | INFO     | mean y: 2888278.276859504
[2026-01-10 16:09:30] 2026-01-10 21:08:49,952 | INFO     | intersect: 37923885959.4398
[2026-01-10 16:09:30] 2026-01-10 21:08:49,969 | INFO     | chi2: 6.499484555824618
[2026-01-10 16:09:30] 2026-01-10 21:08:49,969 | INFO     | current chi2=6.499484555824618 (change=9.984007430025189 %)
[2026-01-10 16:09:30] 2026-01-10 21:08:49,969 | INFO     | left removable region: 20
[2026-01-10 16:09:30] 2026-01-10 21:08:49,970 | INFO     | sum of square deviations: 3346848557.15837
[2026-01-10 16:09:30] 2026-01-10 21:08:49,997 | INFO     | sum of deviations: 32709973622.696854
[2026-01-10 16:09:30] 2026-01-10 21:08:49,998 | INFO     | mean x: 1768071858.520362
[2026-01-10 16:09:30] 2026-01-10 21:08:49,998 | INFO     | mean y: 2977322.28959276
[2026-01-10 16:09:30] 2026-01-10 21:08:49,998 | INFO     | intersect: -17277034864.559113
[2026-01-10 16:09:30] 2026-01-10 21:08:49,998 | INFO     | chi2: 1.321165863154791
[2026-01-10 16:09:30] 2026-01-10 21:08:49,999 | INFO     | current memory leak: 9.77 B/s (using 221 data points, chi2=1.32)
[2026-01-10 16:09:30] 2026-01-10 21:08:49,999 | INFO     | could have reported an average CPU frequency of 2600 MHz (12 samples)
[2026-01-10 16:09:30] 2026-01-10 21:08:49,999 | INFO     | ..............................
[2026-01-10 16:09:30] 2026-01-10 21:08:50,000 | INFO     | . Timing measurements:
[2026-01-10 16:09:30] 2026-01-10 21:08:50,000 | INFO     | . get job = 0 s
[2026-01-10 16:09:30] 2026-01-10 21:08:50,000 | INFO     | . initial setup = 2 s
[2026-01-10 16:09:30] 2026-01-10 21:08:50,000 | INFO     | . payload setup = 34 s
[2026-01-10 16:09:30] 2026-01-10 21:08:50,000 | INFO     | . stage-in = 0 s
[2026-01-10 16:09:30] 2026-01-10 21:08:50,000 | INFO     | . payload execution = 15400 s
[2026-01-10 16:09:30] 2026-01-10 21:08:50,000 | INFO     | . stage-out = 3 s
[2026-01-10 16:09:30] 2026-01-10 21:08:50,000 | INFO     | . log creation = 0 s
[2026-01-10 16:09:30] 2026-01-10 21:08:50,001 | INFO     | ..............................
[2026-01-10 16:09:30] 2026-01-10 21:08:50,251 | INFO     | 
[2026-01-10 16:09:30] 2026-01-10 21:08:50,251 | INFO     | job summary report
[2026-01-10 16:09:30] 2026-01-10 21:08:50,251 | INFO     | --------------------------------------------------
[2026-01-10 16:09:30] 2026-01-10 21:08:50,251 | INFO     | PanDA job id: 6965383894
[2026-01-10 16:09:30] 2026-01-10 21:08:50,251 | INFO     | task id: 47962010
[2026-01-10 16:09:30] 2026-01-10 21:08:50,251 | INFO     | errors: (none)
[2026-01-10 16:09:30] 2026-01-10 21:08:50,252 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 16:09:30] 2026-01-10 21:08:50,252 | INFO     | pilot state: finished 
[2026-01-10 16:09:30] 2026-01-10 21:08:50,252 | INFO     | transexitcode: 0
[2026-01-10 16:09:30] 2026-01-10 21:08:50,252 | INFO     | exeerrorcode: 0
[2026-01-10 16:09:30] 2026-01-10 21:08:50,252 | INFO     | exeerrordiag: 
[2026-01-10 16:09:30] 2026-01-10 21:08:50,252 | INFO     | exitcode: 0
[2026-01-10 16:09:30] 2026-01-10 21:08:50,252 | INFO     | exitmsg: OK
[2026-01-10 16:09:30] 2026-01-10 21:08:50,252 | INFO     | cpuconsumptiontime: 20033 s
[2026-01-10 16:09:30] 2026-01-10 21:08:50,252 | INFO     | nevents: 50
[2026-01-10 16:09:30] 2026-01-10 21:08:50,252 | INFO     | neventsw: 0
[2026-01-10 16:09:30] 2026-01-10 21:08:50,252 | INFO     | pid: 90739
[2026-01-10 16:09:30] 2026-01-10 21:08:50,252 | INFO     | pgrp: 90739
[2026-01-10 16:09:30] 2026-01-10 21:08:50,253 | INFO     | corecount: 12
[2026-01-10 16:09:30] 2026-01-10 21:08:50,253 | INFO     | event service: False
[2026-01-10 16:09:30] 2026-01-10 21:08:50,253 | INFO     | sizes: {0: 2284448, 1: 2284647, 2: 2284647, 13: 2284675, 24: 2284731, 29: 2285021, 35: 2285177, 15440: 2317123, 15441: 2317122, 15445: 2326172, 15448: 2326228, 154
[2026-01-10 16:09:30] 2026-01-10 21:08:50,253 | INFO     | --------------------------------------------------
[2026-01-10 16:09:30] 2026-01-10 21:08:50,253 | INFO     | 
[2026-01-10 16:09:30] 2026-01-10 21:08:50,253 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 16:09:30] 2026-01-10 21:08:50,483 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,483 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,483 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,483 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,484 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,484 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,484 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,484 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,484 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,484 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,484 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,484 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,485 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,485 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 16:09:30] 2026-01-10 21:08:50,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,485 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 16:09:30] 2026-01-10 21:08:50,486 | INFO     | job 6965383894 has completed (purged errors)
[2026-01-10 16:09:30] 2026-01-10 21:08:50,486 | INFO     | overall cleanup function is called
[2026-01-10 16:09:30] 2026-01-10 21:08:51,539 | INFO     | --- collectZombieJob: --- 10, [90739]
[2026-01-10 16:09:30] 2026-01-10 21:08:51,540 | INFO     | zombie collector waiting for pid 90739
[2026-01-10 16:09:30] 2026-01-10 21:08:51,540 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 16:09:30] 2026-01-10 21:08:51,540 | INFO     | collected zombie processes
[2026-01-10 16:09:30] 2026-01-10 21:08:51,540 | INFO     | will attempt to kill all subprocesses of pid=90739
[2026-01-10 16:09:30] 2026-01-10 21:08:52,131 | INFO     | process IDs to be killed: [90739] (in reverse order)
[2026-01-10 16:09:30] 2026-01-10 21:08:52,325 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 16:09:30] 2026-01-10 21:08:52,326 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 16:09:30] 2026-01-10 21:08:52,355 | INFO     | did not find any defunct processes belonging to 90739
[2026-01-10 16:09:30] 2026-01-10 21:08:52,378 | INFO     | did not find any defunct processes belonging to 90739
[2026-01-10 16:09:30] 2026-01-10 21:08:52,378 | INFO     | ready for new job
[2026-01-10 16:09:30] 2026-01-10 21:08:52,378 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 16:09:30] 2026-01-10 21:08:52,380 | INFO     | ***************************************
[2026-01-10 16:09:30] 2026-01-10 21:08:52,381 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 16:09:30] 2026-01-10 21:08:52,381 | INFO     | ***************************************
[2026-01-10 16:09:30] 2026-01-10 21:08:52,381 | INFO     | 
[2026-01-10 16:09:30] 2026-01-10 21:08:52,383 | INFO     | architecture information:
[2026-01-10 16:09:30] 2026-01-10 21:08:52,384 | INFO     | executing command: cat /etc/os-release
[2026-01-10 16:09:30] 2026-01-10 21:08:52,415 | INFO     | cat /etc/os-release:
[2026-01-10 16:09:30] NAME="CentOS Linux"
[2026-01-10 16:09:30] VERSION="7 (Core)"
[2026-01-10 16:09:30] ID="centos"
[2026-01-10 16:09:30] ID_LIKE="rhel fedora"
[2026-01-10 16:09:30] VERSION_ID="7"
[2026-01-10 16:09:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 16:09:30] ANSI_COLOR="0;31"
[2026-01-10 16:09:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 16:09:30] HOME_URL="https://www.centos.org/"
[2026-01-10 16:09:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 16:09:30] 
[2026-01-10 16:09:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 16:09:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 16:09:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 16:09:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 16:09:30] 
[2026-01-10 16:09:30] 2026-01-10 21:08:52,415 | INFO     | ***************************************
[2026-01-10 16:09:30] 2026-01-10 21:08:52,918 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 16:09:30] 2026-01-10 21:08:53,047 | INFO     | sufficient remaining disk space (76103548928 B)
[2026-01-10 16:09:30] 2026-01-10 21:08:53,047 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 16:09:30] 2026-01-10 21:08:53,048 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 16:09:30] 2026-01-10 21:08:53,048 | INFO     | update_server=False
[2026-01-10 16:09:30] 2026-01-10 21:08:53,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 16:09:30] 2026-01-10 21:08:53,056 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:09:30] 2026-01-10 21:08:53,057 | INFO     | aborting loop
[2026-01-10 16:09:30] 2026-01-10 21:08:53,263 | INFO     | all data control threads have been joined
[2026-01-10 16:09:30] 2026-01-10 21:08:53,463 | INFO     | all payload control threads have been joined
[2026-01-10 16:09:30] 2026-01-10 21:08:54,031 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 16:09:30] 2026-01-10 21:08:54,053 | INFO     | [job] retrieve thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:08:54,062 | INFO     | [job] job monitor thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:08:54,070 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:08:54,212 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:08:54,269 | INFO     | [data] control thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:08:54,275 | INFO     | all job control threads have been joined
[2026-01-10 16:09:30] 2026-01-10 21:08:54,284 | INFO     | [payload] validate_post thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:08:54,469 | INFO     | [payload] control thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:08:54,890 | INFO     | [payload] failed_post thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:08:54,917 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:08:55,003 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:08:55,032 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 16:09:30] 2026-01-10 21:08:55,265 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:09:30] 2026-01-10 21:08:55,281 | INFO     | [job] control thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:08:55,420 | INFO     | [data] copytool_in thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:08:55,421 | INFO     | [job] validate thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:08:56,042 | INFO     | [data] copytool_out thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:08:56,271 | INFO     | [job] queue monitor thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:08:59,044 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 16:09:30] 2026-01-10 21:09:22,586 | INFO     | PID=80909 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 16:09:30] 2026-01-10 21:09:22,586 | INFO     | .. there are 27 such processes running
[2026-01-10 16:09:30] 2026-01-10 21:09:22,586 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 16:09:30] 2026-01-10 21:09:22,587 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 16:09:30] 2026-01-10 21:09:22,587 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 16:09:30] 2026-01-10 21:09:23,893 | INFO     | [monitor] cgroup control has ended
[2026-01-10 16:09:30] 2026-01-10 21:09:24,519 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140064336353088)>', '<ExcThread(monitor, started 140064076048128)>']
[2026-01-10 16:09:30] 2026-01-10 21:09:24,598 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 16:09:30] 2026-01-10 21:09:24,599 | INFO     | [monitor] control thread has ended
[2026-01-10 16:09:30] 2026-01-10 21:09:29,545 | INFO     | all workflow threads have been joined
[2026-01-10 16:09:30] 2026-01-10 21:09:29,545 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 16:09:30] 2026-01-10 21:09:29,545 | INFO     | traces error code: 0
[2026-01-10 16:09:30] 2026-01-10 21:09:29,546 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 16:09:30] 2026-01-10 21:09:29,862 [wrapper] ==== pilot stdout END ====
[2026-01-10 16:09:30] 2026-01-10 21:09:29,866 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 16:09:30] 2026-01-10 21:09:29,870 [wrapper] pilotpid: 80909
[2026-01-10 16:09:30] 2026-01-10 21:09:29,899 [wrapper] Pilot exit status: 0
[2026-01-10 16:09:30] 2026-01-10 21:09:30,043 [wrapper] pandaids: 6965383894 6965383894
[2026-01-10 16:09:30] 2026-01-10 21:09:30,367 [wrapper] cleanup supervisor_pilot 1070003 80910
[2026-01-10 16:09:30] 2026-01-10 21:09:30,389 [wrapper] Test setup, not cleaning
[2026-01-10 16:09:30] 2026-01-10 21:09:30,417 [wrapper] apfmon messages muted
[2026-01-10 16:09:30] 2026-01-10 21:09:30,435 [wrapper] ==== wrapper stdout END ====
[2026-01-10 16:09:30] 2026-01-10 21:09:30,453 [wrapper] ==== wrapper stderr END ====
[2026-01-10 16:09:30]  *** Error codes and diagnostics ***
[2026-01-10 16:09:30]     "exeErrorCode": 0,
[2026-01-10 16:09:30]     "exeErrorDiag": "",
[2026-01-10 16:09:30]     "pilotErrorCode": 0,
[2026-01-10 16:09:30]     "pilotErrorDiag": "",
[2026-01-10 16:09:30]  *** Listing of results directory ***
[2026-01-10 16:09:30] total 817040
[2026-01-10 16:09:30] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-10 16:09:30] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:13 queuedata.json
[2026-01-10 16:09:30] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 16:09:30] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 16:09:30] -rw-r--r--. 1 boincer umatlas       100 Jan 10 10:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 16:09:30] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 10:31 run_atlas
[2026-01-10 16:09:30] -rw-r--r--. 1 boincer umatlas       105 Jan 10 10:31 job.xml
[2026-01-10 16:09:30] -rw-r--r--. 3 boincer umatlas 391230903 Jan 10 10:32 EVNT.47962006._000048.pool.root.1
[2026-01-10 16:09:30] -rw-r--r--. 3 boincer umatlas 391230903 Jan 10 10:32 ATLAS.root_0
[2026-01-10 16:09:30] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 10:32 start_atlas.sh
[2026-01-10 16:09:30] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 10:32 shared
[2026-01-10 16:09:30] -rw-r--r--. 2 boincer umatlas    592614 Jan 10 10:32 input.tar.gz
[2026-01-10 16:09:30] -rw-r--r--. 1 boincer umatlas         0 Jan 10 10:32 boinc_lockfile
[2026-01-10 16:09:30] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 11:49 pandaJob.out
[2026-01-10 16:09:30] -rw-------. 1 boincer umatlas        57 Jan 10 11:49 setup.sh.local
[2026-01-10 16:09:30] -rw-------. 1 boincer umatlas    989556 Jan 10 11:49 agis_schedconf.cvmfs.json
[2026-01-10 16:09:30] -rw-r--r--. 1 boincer umatlas       531 Jan 10 15:35 boinc_task_state.xml
[2026-01-10 16:09:30] -rw-r--r--. 1 boincer umatlas      6657 Jan 10 16:02 init_data.xml
[2026-01-10 16:09:30] -rw-------. 1 boincer umatlas  42730981 Jan 10 16:08 HITS.47962010._002035.pool.root.1
[2026-01-10 16:09:30] -rw-------. 1 boincer umatlas      1063 Jan 10 16:08 memory_monitor_summary.json
[2026-01-10 16:09:30] -rw-------. 1 boincer umatlas   1516240 Jan 10 16:08 agis_ddmendpoints.agis.ALL.json
[2026-01-10 16:09:30] -rw-------. 1 boincer umatlas   1774594 Jan 10 16:08 log.47962010._002035.job.log.tgz.1
[2026-01-10 16:09:30] -rw-------. 1 boincer umatlas        96 Jan 10 16:08 pilot_heartbeat.json
[2026-01-10 16:09:30] -rw-------. 1 boincer umatlas      8598 Jan 10 16:08 heartbeat.json
[2026-01-10 16:09:30] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 16:09 boinc_mmap_file
[2026-01-10 16:09:30] -rw-r--r--. 1 boincer umatlas        28 Jan 10 16:09 wrapper_checkpoint.txt
[2026-01-10 16:09:30] -rw-------. 1 boincer umatlas      4822 Jan 10 16:09 pilotlog.txt
[2026-01-10 16:09:30] -rw-------. 1 boincer umatlas   1994605 Jan 10 16:09 log.47962010._002035.job.log.1
[2026-01-10 16:09:30] -rw-------. 1 boincer umatlas       353 Jan 10 16:09 output.list
[2026-01-10 16:09:30] -rw-r--r--. 1 boincer umatlas       620 Jan 10 16:09 runtime_log
[2026-01-10 16:09:30] -rw-------. 1 boincer umatlas   3788800 Jan 10 16:09 result.tar.gz
[2026-01-10 16:09:30] -rw-r--r--. 1 boincer umatlas      9415 Jan 10 16:09 runtime_log.err
[2026-01-10 16:09:30] -rw-------. 1 boincer umatlas       782 Jan 10 16:09 JyxLDmNyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGXhKDmihpjvn.diag
[2026-01-10 16:09:30] -rw-r--r--. 1 boincer umatlas     23484 Jan 10 16:09 stderr.txt
[2026-01-10 16:09:31] HITS file was successfully produced:
[2026-01-10 16:09:31] -rw-------. 1 boincer umatlas 42730981 Jan 10 16:08 shared/HITS.pool.root.1
[2026-01-10 16:09:31]  *** Contents of shared directory: ***
[2026-01-10 16:09:31] total 428092
[2026-01-10 16:09:31] -rw-r--r--. 3 boincer umatlas 391230903 Jan 10 10:32 ATLAS.root_0
[2026-01-10 16:09:31] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 10:32 start_atlas.sh
[2026-01-10 16:09:31] -rw-r--r--. 2 boincer umatlas    592614 Jan 10 10:32 input.tar.gz
[2026-01-10 16:09:31] -rw-------. 1 boincer umatlas  42730981 Jan 10 16:08 HITS.pool.root.1
[2026-01-10 16:09:31] -rw-------. 1 boincer umatlas   3788800 Jan 10 16:09 result.tar.gz
16:09:33 (75566): run_atlas exited; CPU time 20375.941971
16:09:33 (75566): called boinc_finish(0)

</stderr_txt>
]]>

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