Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:14:10 (47485): wrapper (7.7.26015): starting
08:14:10 (47485): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 08:14:10] Arguments: --nthreads 8
[2026-01-10 08:14:10] Threads: 8
[2026-01-10 08:14:10] Checking for CVMFS
[2026-01-10 08:14:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:14:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:14:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:14:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:14:11] 2.13.3.0 6948 23679 209028 154980 0 19 37104246 40960000 6237 16776704 0 25028651 99.684 20943105 43580 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 08:14:11] CVMFS is ok
[2026-01-10 08:14:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:14:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:14:11] Further information can be found at the LHC@home message board.
[2026-01-10 08:14:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:14:11] Checking for apptainer binary...
[2026-01-10 08:14:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:14:11] Running /usr/bin/apptainer --version
[2026-01-10 08:14:11] apptainer version 1.4.5-2.el9
[2026-01-10 08:14:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:14:12] c-206-41.aglt2.org
[2026-01-10 08:14:12] apptainer works
[2026-01-10 08:14:12] Set ATHENA_PROC_NUMBER=8
[2026-01-10 08:14:12] Set ATHENA_CORE_NUMBER=8
[2026-01-10 08:14:12] Starting ATLAS job with PandaID=6965382702
[2026-01-10 08:14:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 11:18:34]  *** The last 200 lines of the pilot log: ***
[2026-01-10 11:18:34] 2026-01-10 16:17:52,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:18:34] 2026-01-10 16:17:52,291 | INFO     | time since job start (10968s) is within the limit (349056.0s)
[2026-01-10 11:18:34] 2026-01-10 16:17:54,299 | INFO     | time since job start (10970s) is within the limit (349056.0s)
[2026-01-10 11:18:34] 2026-01-10 16:17:54,681 | INFO     | monitor loop #767: job 0:6965382702 is in state 'finished'
[2026-01-10 11:18:34] 2026-01-10 16:17:54,684 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:18:34] 2026-01-10 16:17:56,307 | INFO     | time since job start (10972s) is within the limit (349056.0s)
[2026-01-10 11:18:34] 2026-01-10 16:17:57,216 | INFO     | monitor loop #768: job 0:6965382702 is in state 'finished'
[2026-01-10 11:18:34] 2026-01-10 16:17:57,217 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:18:34] 2026-01-10 16:17:58,243 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 11:18:34] 2026-01-10 16:17:58,250 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3243.5209999999993
[2026-01-10 11:18:34] 2026-01-10 16:17:58,316 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965382702/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 11:18:34] 2026-01-10 16:17:58,317 | INFO     | extracted standard info from prmon json
[2026-01-10 11:18:34] 2026-01-10 16:17:58,317 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 11:18:34] 2026-01-10 16:17:58,317 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 11:18:34] 2026-01-10 16:17:58,318 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 11:18:34] 2026-01-10 16:17:58,318 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 11:18:34] 2026-01-10 16:17:58,350 | INFO     | time since job start (10974s) is within the limit (349056.0s)
[2026-01-10 11:18:34] 2026-01-10 16:17:58,353 | INFO     | fitting pss+swap vs Time
[2026-01-10 11:18:34] 2026-01-10 16:17:58,353 | INFO     | sum of square deviations: 1749023596.2471948
[2026-01-10 11:18:34] 2026-01-10 16:17:58,354 | INFO     | sum of deviations: 2435692256.3707886
[2026-01-10 11:18:34] 2026-01-10 16:17:58,354 | INFO     | mean x: 1768056389.1797752
[2026-01-10 11:18:34] 2026-01-10 16:17:58,354 | INFO     | mean y: 2559193.2696629213
[2026-01-10 11:18:34] 2026-01-10 16:17:58,354 | INFO     | intersect: -2459638152.2619944
[2026-01-10 11:18:34] 2026-01-10 16:17:58,355 | INFO     | chi2: 1.7074378658941394
[2026-01-10 11:18:34] 2026-01-10 16:17:58,355 | INFO     | sum of square deviations: 1605781594.7629988
[2026-01-10 11:18:34] 2026-01-10 16:17:58,356 | INFO     | sum of deviations: 2091191121.5664756
[2026-01-10 11:18:34] 2026-01-10 16:17:58,356 | INFO     | mean x: 1768056236.6936417
[2026-01-10 11:18:34] 2026-01-10 16:17:58,356 | INFO     | mean y: 2558841.8786127167
[2026-01-10 11:18:34] 2026-01-10 16:17:58,360 | INFO     | intersect: -2299960701.6647162
[2026-01-10 11:18:34] 2026-01-10 16:17:58,360 | INFO     | chi2: 1.7052229276575799
[2026-01-10 11:18:34] 2026-01-10 16:17:58,360 | INFO     | current chi2=1.7052229276575799 (change=0.12972291881318856 %)
[2026-01-10 11:18:34] 2026-01-10 16:17:58,361 | INFO     | right removable region: 172
[2026-01-10 11:18:34] 2026-01-10 16:17:58,361 | INFO     | sum of square deviations: 1605718886.3699408
[2026-01-10 11:18:34] 2026-01-10 16:17:58,362 | INFO     | sum of deviations: -27615242006.537582
[2026-01-10 11:18:34] 2026-01-10 16:17:58,362 | INFO     | mean x: 1768056541.699422
[2026-01-10 11:18:34] 2026-01-10 16:17:58,362 | INFO     | mean y: 2590797.6242774567
[2026-01-10 11:18:34] 2026-01-10 16:17:58,362 | INFO     | intersect: 30409724757.82272
[2026-01-10 11:18:34] 2026-01-10 16:17:58,362 | INFO     | chi2: 0.08242265660561324
[2026-01-10 11:18:34] 2026-01-10 16:17:58,362 | INFO     | current chi2=0.08242265660561324 (change=95.17272878550982 %)
[2026-01-10 11:18:34] 2026-01-10 16:17:58,362 | INFO     | sum of square deviations: 1470492133.1190484
[2026-01-10 11:18:34] 2026-01-10 16:17:58,363 | INFO     | sum of deviations: -26261789844.17857
[2026-01-10 11:18:34] 2026-01-10 16:17:58,363 | INFO     | mean x: 1768056694.202381
[2026-01-10 11:18:34] 2026-01-10 16:17:58,363 | INFO     | mean y: 2589263.4464285714
[2026-01-10 11:18:34] 2026-01-10 16:17:58,364 | INFO     | intersect: 31578639410.17438
[2026-01-10 11:18:34] 2026-01-10 16:17:58,364 | INFO     | chi2: 0.08114480869647632
[2026-01-10 11:18:34] 2026-01-10 16:17:58,364 | INFO     | current chi2=0.08114480869647632 (change=1.5503600123584123 %)
[2026-01-10 11:18:34] 2026-01-10 16:17:58,364 | INFO     | left removable region: 20
[2026-01-10 11:18:34] 2026-01-10 16:17:58,368 | INFO     | sum of square deviations: 1089169598.9407918
[2026-01-10 11:18:34] 2026-01-10 16:17:58,369 | INFO     | sum of deviations: -21200277245.47369
[2026-01-10 11:18:34] 2026-01-10 16:17:58,369 | INFO     | mean x: 1768056816.2302632
[2026-01-10 11:18:34] 2026-01-10 16:17:58,369 | INFO     | mean y: 2584173.8421052634
[2026-01-10 11:18:34] 2026-01-10 16:17:58,369 | INFO     | intersect: 34417146172.52742
[2026-01-10 11:18:34] 2026-01-10 16:17:58,369 | INFO     | chi2: 0.07425571282215859
[2026-01-10 11:18:34] 2026-01-10 16:17:58,370 | INFO     | current memory leak: -19.46 B/s (using 152 data points, chi2=0.07)
[2026-01-10 11:18:34] 2026-01-10 16:17:58,370 | INFO     | could have reported an average CPU frequency of 3226 MHz (9 samples)
[2026-01-10 11:18:34] 2026-01-10 16:17:58,370 | INFO     | ..............................
[2026-01-10 11:18:34] 2026-01-10 16:17:58,370 | INFO     | . Timing measurements:
[2026-01-10 11:18:34] 2026-01-10 16:17:58,370 | INFO     | . get job = 0 s
[2026-01-10 11:18:34] 2026-01-10 16:17:58,370 | INFO     | . initial setup = 3 s
[2026-01-10 11:18:34] 2026-01-10 16:17:58,371 | INFO     | . payload setup = 31 s
[2026-01-10 11:18:34] 2026-01-10 16:17:58,371 | INFO     | . stage-in = 0 s
[2026-01-10 11:18:34] 2026-01-10 16:17:58,371 | INFO     | . payload execution = 10855 s
[2026-01-10 11:18:34] 2026-01-10 16:17:58,371 | INFO     | . stage-out = 4 s
[2026-01-10 11:18:34] 2026-01-10 16:17:58,371 | INFO     | . log creation = 0 s
[2026-01-10 11:18:34] 2026-01-10 16:17:58,371 | INFO     | ..............................
[2026-01-10 11:18:34] 2026-01-10 16:17:58,537 | INFO     | 
[2026-01-10 11:18:34] 2026-01-10 16:17:58,538 | INFO     | job summary report
[2026-01-10 11:18:34] 2026-01-10 16:17:58,539 | INFO     | --------------------------------------------------
[2026-01-10 11:18:34] 2026-01-10 16:17:58,539 | INFO     | PanDA job id: 6965382702
[2026-01-10 11:18:34] 2026-01-10 16:17:58,539 | INFO     | task id: 47898826
[2026-01-10 11:18:34] 2026-01-10 16:17:58,539 | INFO     | errors: (none)
[2026-01-10 11:18:34] 2026-01-10 16:17:58,539 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 11:18:34] 2026-01-10 16:17:58,539 | INFO     | pilot state: finished 
[2026-01-10 11:18:34] 2026-01-10 16:17:58,539 | INFO     | transexitcode: 0
[2026-01-10 11:18:34] 2026-01-10 16:17:58,539 | INFO     | exeerrorcode: 0
[2026-01-10 11:18:34] 2026-01-10 16:17:58,539 | INFO     | exeerrordiag: 
[2026-01-10 11:18:34] 2026-01-10 16:17:58,539 | INFO     | exitcode: 0
[2026-01-10 11:18:34] 2026-01-10 16:17:58,539 | INFO     | exitmsg: OK
[2026-01-10 11:18:34] 2026-01-10 16:17:58,539 | INFO     | cpuconsumptiontime: 47301 s
[2026-01-10 11:18:34] 2026-01-10 16:17:58,539 | INFO     | nevents: 400
[2026-01-10 11:18:34] 2026-01-10 16:17:58,540 | INFO     | neventsw: 0
[2026-01-10 11:18:34] 2026-01-10 16:17:58,540 | INFO     | pid: 68800
[2026-01-10 11:18:34] 2026-01-10 16:17:58,540 | INFO     | pgrp: 68800
[2026-01-10 11:18:34] 2026-01-10 16:17:58,540 | INFO     | corecount: 8
[2026-01-10 11:18:34] 2026-01-10 16:17:58,540 | INFO     | event service: False
[2026-01-10 11:18:34] 2026-01-10 16:17:58,540 | INFO     | sizes: {0: 2283747, 1: 2283946, 12: 2283946, 20: 2284236, 23: 2284264, 10891: 2313288, 10892: 2313415, 10897: 2322469, 10898: 2322525, 10936: 2322783}
[2026-01-10 11:18:34] 2026-01-10 16:17:58,540 | INFO     | --------------------------------------------------
[2026-01-10 11:18:34] 2026-01-10 16:17:58,540 | INFO     | 
[2026-01-10 11:18:34] 2026-01-10 16:17:58,540 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 11:18:34] 2026-01-10 16:17:58,626 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,626 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,626 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,626 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,626 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,626 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,626 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,626 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,627 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,627 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,627 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,627 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,627 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,627 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,627 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,627 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,627 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,627 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 11:18:34] 2026-01-10 16:17:58,627 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,627 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 11:18:34] 2026-01-10 16:17:58,627 | INFO     | job 6965382702 has completed (purged errors)
[2026-01-10 11:18:34] 2026-01-10 16:17:58,628 | INFO     | overall cleanup function is called
[2026-01-10 11:18:34] 2026-01-10 16:17:59,662 | INFO     | --- collectZombieJob: --- 10, [68800]
[2026-01-10 11:18:34] 2026-01-10 16:17:59,662 | INFO     | zombie collector waiting for pid 68800
[2026-01-10 11:18:34] 2026-01-10 16:17:59,663 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 11:18:34] 2026-01-10 16:17:59,663 | INFO     | collected zombie processes
[2026-01-10 11:18:34] 2026-01-10 16:17:59,663 | INFO     | will attempt to kill all subprocesses of pid=68800
[2026-01-10 11:18:34] 2026-01-10 16:18:00,091 | INFO     | process IDs to be killed: [68800] (in reverse order)
[2026-01-10 11:18:34] 2026-01-10 16:18:00,545 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 11:18:34] 2026-01-10 16:18:00,549 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 11:18:34] 2026-01-10 16:18:00,569 | INFO     | did not find any defunct processes belonging to 68800
[2026-01-10 11:18:34] 2026-01-10 16:18:00,588 | INFO     | did not find any defunct processes belonging to 68800
[2026-01-10 11:18:34] 2026-01-10 16:18:00,588 | INFO     | ready for new job
[2026-01-10 11:18:34] 2026-01-10 16:18:00,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 11:18:34] 2026-01-10 16:18:00,591 | INFO     | ***************************************
[2026-01-10 11:18:34] 2026-01-10 16:18:00,592 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 11:18:34] 2026-01-10 16:18:00,592 | INFO     | ***************************************
[2026-01-10 11:18:34] 2026-01-10 16:18:00,592 | INFO     | 
[2026-01-10 11:18:34] 2026-01-10 16:18:00,632 | INFO     | architecture information:
[2026-01-10 11:18:34] 2026-01-10 16:18:00,665 | INFO     | executing command: cat /etc/os-release
[2026-01-10 11:18:34] 2026-01-10 16:18:00,886 | INFO     | cat /etc/os-release:
[2026-01-10 11:18:34] NAME="CentOS Linux"
[2026-01-10 11:18:34] VERSION="7 (Core)"
[2026-01-10 11:18:34] ID="centos"
[2026-01-10 11:18:34] ID_LIKE="rhel fedora"
[2026-01-10 11:18:34] VERSION_ID="7"
[2026-01-10 11:18:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 11:18:34] ANSI_COLOR="0;31"
[2026-01-10 11:18:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 11:18:34] HOME_URL="https://www.centos.org/"
[2026-01-10 11:18:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 11:18:34] 
[2026-01-10 11:18:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 11:18:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 11:18:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 11:18:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 11:18:34] 
[2026-01-10 11:18:34] 2026-01-10 16:18:00,886 | INFO     | ***************************************
[2026-01-10 11:18:34] 2026-01-10 16:18:01,390 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 11:18:34] 2026-01-10 16:18:01,617 | INFO     | sufficient remaining disk space (85010153472 B)
[2026-01-10 11:18:34] 2026-01-10 16:18:01,617 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 11:18:34] 2026-01-10 16:18:01,617 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 11:18:34] 2026-01-10 16:18:01,617 | INFO     | update_server=False
[2026-01-10 11:18:34] 2026-01-10 16:18:01,617 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 11:18:34] 2026-01-10 16:18:01,619 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:18:34] 2026-01-10 16:18:01,620 | INFO     | aborting loop
[2026-01-10 11:18:34] 2026-01-10 16:18:02,343 | INFO     | all job control threads have been joined
[2026-01-10 11:18:34] 2026-01-10 16:18:02,444 | INFO     | all data control threads have been joined
[2026-01-10 11:18:34] 2026-01-10 16:18:02,625 | INFO     | [job] job monitor thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:02,639 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:02,648 | INFO     | [job] retrieve thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:02,671 | INFO     | [job] validate thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:02,820 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 11:18:34] 2026-01-10 16:18:02,841 | INFO     | [data] copytool_in thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:02,938 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 11:18:34] 2026-01-10 16:18:03,044 | INFO     | all payload control threads have been joined
[2026-01-10 11:18:34] 2026-01-10 16:18:03,190 | INFO     | [payload] failed_post thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:03,349 | INFO     | [job] control thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:03,365 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:03,451 | INFO     | [data] control thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:03,521 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:03,552 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:18:34] 2026-01-10 16:18:03,942 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:03,966 | INFO     | [payload] validate_post thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:04,050 | INFO     | [payload] control thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:04,560 | INFO     | [job] queue monitor thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:04,945 | INFO     | [data] copytool_out thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:06,853 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 11:18:34] 2026-01-10 16:18:22,556 | INFO     | [monitor] cgroup control has ended
[2026-01-10 11:18:34] 2026-01-10 16:18:23,386 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139912735496000)>', '<ExcThread(monitor, started 139912462440192)>']
[2026-01-10 11:18:34] 2026-01-10 16:18:28,423 | INFO     | all workflow threads have been joined
[2026-01-10 11:18:34] 2026-01-10 16:18:28,423 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 11:18:34] 2026-01-10 16:18:28,424 | INFO     | traces error code: 0
[2026-01-10 11:18:34] 2026-01-10 16:18:28,424 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 11:18:34] 2026-01-10 16:18:33,557 | INFO     | PID=55080 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 11:18:34] 2026-01-10 16:18:33,591 | INFO     | .. there are 11 such processes running
[2026-01-10 11:18:34] 2026-01-10 16:18:33,592 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 11:18:34] 2026-01-10 16:18:33,592 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 11:18:34] 2026-01-10 16:18:33,592 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 11:18:34] 2026-01-10 16:18:33,592 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 11:18:34] 2026-01-10 16:18:33,592 | INFO     | [monitor] control thread has ended
[2026-01-10 11:18:34] 2026-01-10 16:18:33,916 [wrapper] ==== pilot stdout END ====
[2026-01-10 11:18:34] 2026-01-10 16:18:33,947 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 11:18:34] 2026-01-10 16:18:33,987 [wrapper] pilotpid: 55080
[2026-01-10 11:18:34] 2026-01-10 16:18:34,023 [wrapper] Pilot exit status: 0
[2026-01-10 11:18:34] 2026-01-10 16:18:34,129 [wrapper] pandaids: 6965382702
[2026-01-10 11:18:34] 2026-01-10 16:18:34,396 [wrapper] cleanup supervisor_pilot  388577 55081
[2026-01-10 11:18:34] 2026-01-10 16:18:34,435 [wrapper] Test setup, not cleaning
[2026-01-10 11:18:34] 2026-01-10 16:18:34,462 [wrapper] apfmon messages muted
[2026-01-10 11:18:34] 2026-01-10 16:18:34,510 [wrapper] ==== wrapper stdout END ====
[2026-01-10 11:18:34] 2026-01-10 16:18:34,551 [wrapper] ==== wrapper stderr END ====
[2026-01-10 11:18:34]  *** Error codes and diagnostics ***
[2026-01-10 11:18:34]     "exeErrorCode": 0,
[2026-01-10 11:18:34]     "exeErrorDiag": "",
[2026-01-10 11:18:34]     "pilotErrorCode": 0,
[2026-01-10 11:18:34]     "pilotErrorDiag": "",
[2026-01-10 11:18:34]  *** Listing of results directory ***
[2026-01-10 11:18:34] total 445000
[2026-01-10 11:18:34] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:09 pilot3.tar.gz
[2026-01-10 11:18:34] -rwx------. 1 boincer umatlas     36322 Jan 10 08:13 runpilot2-wrapper.sh
[2026-01-10 11:18:34] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:13 queuedata.json
[2026-01-10 11:18:34] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 11:18:34] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:14 run_atlas
[2026-01-10 11:18:34] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:14 job.xml
[2026-01-10 11:18:34] -rw-r--r--. 2 boincer umatlas 225432108 Jan 10 08:14 EVNT.47898824._001019.pool.root.1
[2026-01-10 11:18:34] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:14 start_atlas.sh
[2026-01-10 11:18:34] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:14 shared
[2026-01-10 11:18:34] -rw-r--r--. 2 boincer umatlas    592402 Jan 10 08:14 input.tar.gz
[2026-01-10 11:18:34] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:14 boinc_lockfile
[2026-01-10 11:18:34] -rw-r--r--. 1 boincer umatlas      2518 Jan 10 08:14 pandaJob.out
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas        57 Jan 10 08:14 setup.sh.local
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas    989556 Jan 10 08:15 agis_schedconf.cvmfs.json
[2026-01-10 11:18:34] drwx------. 5 boincer umatlas      4096 Jan 10 08:15 pilot3
[2026-01-10 11:18:34] -rw-r--r--. 1 boincer umatlas      6905 Jan 10 11:10 init_data.xml
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas 222520148 Jan 10 11:16 HITS.47898826._040278.pool.root.1
[2026-01-10 11:18:34] -rw-r--r--. 1 boincer umatlas       531 Jan 10 11:16 boinc_task_state.xml
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas      1030 Jan 10 11:17 memory_monitor_summary.json
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas   1516240 Jan 10 11:17 agis_ddmendpoints.agis.ALL.json
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas    414797 Jan 10 11:17 log.47898826._040278.job.log.tgz.1
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas      7781 Jan 10 11:17 heartbeat.json
[2026-01-10 11:18:34] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 11:18 boinc_mmap_file
[2026-01-10 11:18:34] -rw-r--r--. 1 boincer umatlas        28 Jan 10 11:18 wrapper_checkpoint.txt
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas        95 Jan 10 11:18 pilot_heartbeat.json
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas       821 Jan 10 11:18 pilotlog.txt
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas   1488347 Jan 10 11:18 log.47898826._040278.job.log.1
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas       357 Jan 10 11:18 output.list
[2026-01-10 11:18:34] -rw-r--r--. 1 boincer umatlas       620 Jan 10 11:18 runtime_log
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas   1925120 Jan 10 11:18 result.tar.gz
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas       655 Jan 10 11:18 xPsKDmFxny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKWhKDmy3iSTm.diag
[2026-01-10 11:18:34] -rw-r--r--. 1 boincer umatlas      9343 Jan 10 11:18 runtime_log.err
[2026-01-10 11:18:34] -rw-r--r--. 1 boincer umatlas     21433 Jan 10 11:18 stderr.txt
[2026-01-10 11:18:34] HITS file was successfully produced:
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas 222520148 Jan 10 11:16 shared/HITS.pool.root.1
[2026-01-10 11:18:34]  *** Contents of shared directory: ***
[2026-01-10 11:18:34] total 439944
[2026-01-10 11:18:34] -rw-r--r--. 2 boincer umatlas 225432108 Jan 10 08:14 ATLAS.root_0
[2026-01-10 11:18:34] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:14 start_atlas.sh
[2026-01-10 11:18:34] -rw-r--r--. 2 boincer umatlas    592402 Jan 10 08:14 input.tar.gz
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas 222520148 Jan 10 11:16 HITS.pool.root.1
[2026-01-10 11:18:34] -rw-------. 1 boincer umatlas   1925120 Jan 10 11:18 result.tar.gz
11:18:36 (47485): run_atlas exited; CPU time 47447.641327
11:18:36 (47485): called boinc_finish(0)

</stderr_txt>
]]>

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