Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:31:15 (3253084): wrapper (7.7.26015): starting
08:31:15 (3253084): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 08:31:15] Arguments: --nthreads 8
[2026-01-10 08:31:15] Threads: 8
[2026-01-10 08:31:15] Checking for CVMFS
[2026-01-10 08:31:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:31:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:31:17] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:31:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:31:19] 2.13.3.0 11414 94866 150964 154981 2 333 23752113 25181184 23316 16776704 0 520717549 99.585 538013198 26359 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 08:31:19] CVMFS is ok
[2026-01-10 08:31:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:31:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:31:19] Further information can be found at the LHC@home message board.
[2026-01-10 08:31:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:31:19] Checking for apptainer binary...
[2026-01-10 08:31:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:31:19] Running /usr/bin/apptainer --version
[2026-01-10 08:31:19] apptainer version 1.4.5-2.el9
[2026-01-10 08:31:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:31:21] c-16-34.aglt2.org
[2026-01-10 08:31:21] apptainer works
[2026-01-10 08:31:21] Set ATHENA_PROC_NUMBER=8
[2026-01-10 08:31:21] Set ATHENA_CORE_NUMBER=8
[2026-01-10 08:31:21] Starting ATLAS job with PandaID=6965384378
[2026-01-10 08:31:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 15:31:01]  *** The last 200 lines of the pilot log: ***
[2026-01-10 15:31:01] 2026-01-10 20:29:40,491 | INFO     | monitor loop #1075: job 0:6965384378 is in state 'finished'
[2026-01-10 15:31:01] 2026-01-10 20:29:40,527 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 15:31:01] 2026-01-10 20:29:40,546 | INFO     | time since job start (24995s) is within the limit (349056.0s)
[2026-01-10 15:31:01] 2026-01-10 20:29:42,554 | INFO     | time since job start (24997s) is within the limit (349056.0s)
[2026-01-10 15:31:01] 2026-01-10 20:29:43,037 | INFO     | monitor loop #1076: job 0:6965384378 is in state 'finished'
[2026-01-10 15:31:01] 2026-01-10 20:29:43,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 15:31:01] 2026-01-10 20:29:44,560 | INFO     | time since job start (24999s) is within the limit (349056.0s)
[2026-01-10 15:31:01] 2026-01-10 20:29:45,542 | INFO     | monitor loop #1077: job 0:6965384378 is in state 'finished'
[2026-01-10 15:31:01] 2026-01-10 20:29:45,566 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 15:31:01] 2026-01-10 20:29:46,575 | INFO     | time since job start (25001s) is within the limit (349056.0s)
[2026-01-10 15:31:01] 2026-01-10 20:29:48,071 | INFO     | monitor loop #1078: job 0:6965384378 is in state 'finished'
[2026-01-10 15:31:01] 2026-01-10 20:29:48,071 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 15:31:01] 2026-01-10 20:29:48,604 | INFO     | time since job start (25003s) is within the limit (349056.0s)
[2026-01-10 15:31:01] 2026-01-10 20:29:50,576 | INFO     | monitor loop #1079: job 0:6965384378 is in state 'finished'
[2026-01-10 15:31:01] 2026-01-10 20:29:50,601 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 15:31:01] 2026-01-10 20:29:50,611 | INFO     | time since job start (25005s) is within the limit (349056.0s)
[2026-01-10 15:31:01] 2026-01-10 20:29:51,381 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 15:31:01] 2026-01-10 20:29:51,390 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2803.1621875
[2026-01-10 15:31:01] 2026-01-10 20:29:51,440 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965384378/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 15:31:01] 2026-01-10 20:29:51,440 | INFO     | extracted standard info from prmon json
[2026-01-10 15:31:01] 2026-01-10 20:29:51,441 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 15:31:01] 2026-01-10 20:29:51,441 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 15:31:01] 2026-01-10 20:29:51,449 | INFO     | fitting pss+swap vs Time
[2026-01-10 15:31:01] 2026-01-10 20:29:51,450 | INFO     | sum of square deviations: 20597082856.8
[2026-01-10 15:31:01] 2026-01-10 20:29:51,455 | INFO     | sum of deviations: 9171904312.333748
[2026-01-10 15:31:01] 2026-01-10 20:29:51,455 | INFO     | mean x: 1768064553.5333333
[2026-01-10 15:31:01] 2026-01-10 20:29:51,456 | INFO     | mean y: 2343355.716049383
[2026-01-10 15:31:01] 2026-01-10 20:29:51,456 | INFO     | intersect: -784977791.4474208
[2026-01-10 15:31:01] 2026-01-10 20:29:51,456 | INFO     | chi2: 22.345607845850445
[2026-01-10 15:31:01] 2026-01-10 20:29:51,457 | INFO     | sum of square deviations: 19844103022.75993
[2026-01-10 15:31:01] 2026-01-10 20:29:51,462 | INFO     | sum of deviations: 120180428665.93031
[2026-01-10 15:31:01] 2026-01-10 20:29:51,463 | INFO     | mean x: 1768064401.09
[2026-01-10 15:31:01] 2026-01-10 20:29:51,463 | INFO     | mean y: 2365850.5575
[2026-01-10 15:31:01] 2026-01-10 20:29:51,463 | INFO     | intersect: -10705436733.83035
[2026-01-10 15:31:01] 2026-01-10 20:29:51,464 | INFO     | chi2: 19.15198387761815
[2026-01-10 15:31:01] 2026-01-10 20:29:51,464 | INFO     | current chi2=19.15198387761815 (change=14.291953883122261 %)
[2026-01-10 15:31:01] 2026-01-10 20:29:51,464 | INFO     | right removable region: 399
[2026-01-10 15:31:01] 2026-01-10 20:29:51,465 | INFO     | sum of square deviations: 19842983062.759937
[2026-01-10 15:31:01] 2026-01-10 20:29:51,470 | INFO     | sum of deviations: -124833066662.83028
[2026-01-10 15:31:01] 2026-01-10 20:29:51,470 | INFO     | mean x: 1768064706.09
[2026-01-10 15:31:01] 2026-01-10 20:29:51,470 | INFO     | mean y: 2370453.2175
[2026-01-10 15:31:01] 2026-01-10 20:29:51,470 | INFO     | intersect: 11125342166.767492
[2026-01-10 15:31:01] 2026-01-10 20:29:51,471 | INFO     | chi2: 17.418795171171457
[2026-01-10 15:31:01] 2026-01-10 20:29:51,471 | INFO     | current chi2=17.418795171171457 (change=22.0482374373803 %)
[2026-01-10 15:31:01] 2026-01-10 20:29:51,471 | INFO     | left removable region: 10
[2026-01-10 15:31:01] 2026-01-10 20:29:51,472 | INFO     | sum of square deviations: 18250469610.457764
[2026-01-10 15:31:01] 2026-01-10 20:29:51,477 | INFO     | sum of deviations: -105213554759.4371
[2026-01-10 15:31:01] 2026-01-10 20:29:51,478 | INFO     | mean x: 1768064675.7197943
[2026-01-10 15:31:01] 2026-01-10 20:29:51,478 | INFO     | mean y: 2421390.5372750643
[2026-01-10 15:31:01] 2026-01-10 20:29:51,478 | INFO     | intersect: 10195275248.416994
[2026-01-10 15:31:01] 2026-01-10 20:29:51,478 | INFO     | chi2: 10.36485717855886
[2026-01-10 15:31:01] 2026-01-10 20:29:51,479 | INFO     | current memory leak: -5.76 B/s (using 389 data points, chi2=10.36)
[2026-01-10 15:31:01] 2026-01-10 20:29:51,479 | INFO     | could have reported an average CPU frequency of 2837 MHz (17 samples)
[2026-01-10 15:31:01] 2026-01-10 20:29:51,480 | INFO     | ..............................
[2026-01-10 15:31:01] 2026-01-10 20:29:51,480 | INFO     | . Timing measurements:
[2026-01-10 15:31:01] 2026-01-10 20:29:51,480 | INFO     | . get job = 2 s
[2026-01-10 15:31:01] 2026-01-10 20:29:51,480 | INFO     | . initial setup = 5 s
[2026-01-10 15:31:01] 2026-01-10 20:29:51,480 | INFO     | . payload setup = 77 s
[2026-01-10 15:31:01] 2026-01-10 20:29:51,480 | INFO     | . stage-in = 0 s
[2026-01-10 15:31:01] 2026-01-10 20:29:51,480 | INFO     | . payload execution = 24743 s
[2026-01-10 15:31:01] 2026-01-10 20:29:51,480 | INFO     | . stage-out = 9 s
[2026-01-10 15:31:01] 2026-01-10 20:29:51,480 | INFO     | . log creation = 2 s
[2026-01-10 15:31:01] 2026-01-10 20:29:51,481 | INFO     | ..............................
[2026-01-10 15:31:01] 2026-01-10 20:29:52,732 | INFO     | 
[2026-01-10 15:31:01] 2026-01-10 20:29:52,732 | INFO     | job summary report
[2026-01-10 15:31:01] 2026-01-10 20:29:52,732 | INFO     | --------------------------------------------------
[2026-01-10 15:31:01] 2026-01-10 20:29:52,733 | INFO     | PanDA job id: 6965384378
[2026-01-10 15:31:01] 2026-01-10 20:29:52,733 | INFO     | task id: 47962010
[2026-01-10 15:31:01] 2026-01-10 20:29:52,733 | INFO     | errors: (none)
[2026-01-10 15:31:01] 2026-01-10 20:29:52,733 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 15:31:01] 2026-01-10 20:29:52,733 | INFO     | pilot state: finished 
[2026-01-10 15:31:01] 2026-01-10 20:29:52,733 | INFO     | transexitcode: 0
[2026-01-10 15:31:01] 2026-01-10 20:29:52,733 | INFO     | exeerrorcode: 0
[2026-01-10 15:31:01] 2026-01-10 20:29:52,733 | INFO     | exeerrordiag: 
[2026-01-10 15:31:01] 2026-01-10 20:29:52,733 | INFO     | exitcode: 0
[2026-01-10 15:31:01] 2026-01-10 20:29:52,733 | INFO     | exitmsg: OK
[2026-01-10 15:31:01] 2026-01-10 20:29:52,734 | INFO     | cpuconsumptiontime: 23585 s
[2026-01-10 15:31:01] 2026-01-10 20:29:52,734 | INFO     | nevents: 50
[2026-01-10 15:31:01] 2026-01-10 20:29:52,734 | INFO     | neventsw: 0
[2026-01-10 15:31:01] 2026-01-10 20:29:52,734 | INFO     | pid: 3301457
[2026-01-10 15:31:01] 2026-01-10 20:29:52,734 | INFO     | pgrp: 3301457
[2026-01-10 15:31:01] 2026-01-10 20:29:52,734 | INFO     | corecount: 8
[2026-01-10 15:31:01] 2026-01-10 20:29:52,734 | INFO     | event service: False
[2026-01-10 15:31:01] 2026-01-10 20:29:52,734 | INFO     | sizes: {0: 2283741, 1: 2284342, 2: 2284426, 3: 2284454, 4: 2284653, 5: 2284865, 16: 2284865, 27: 2284893, 39: 2284921, 50: 2284949, 52: 2285239, 62: 2285547, 24827
[2026-01-10 15:31:01] 2026-01-10 20:29:52,734 | INFO     | --------------------------------------------------
[2026-01-10 15:31:01] 2026-01-10 20:29:52,735 | INFO     | 
[2026-01-10 15:31:01] 2026-01-10 20:29:52,735 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 15:31:01] 2026-01-10 20:29:52,891 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,892 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,892 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,892 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,892 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,892 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,892 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,892 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,893 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,893 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,893 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,893 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,893 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,893 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,893 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,893 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,894 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,894 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 15:31:01] 2026-01-10 20:29:52,894 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,894 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 15:31:01] 2026-01-10 20:29:52,894 | INFO     | job 6965384378 has completed (purged errors)
[2026-01-10 15:31:01] 2026-01-10 20:29:52,894 | INFO     | overall cleanup function is called
[2026-01-10 15:31:01] 2026-01-10 20:29:54,202 | INFO     | --- collectZombieJob: --- 10, [3301457]
[2026-01-10 15:31:01] 2026-01-10 20:29:54,202 | INFO     | zombie collector waiting for pid 3301457
[2026-01-10 15:31:01] 2026-01-10 20:29:54,202 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 15:31:01] 2026-01-10 20:29:54,202 | INFO     | collected zombie processes
[2026-01-10 15:31:01] 2026-01-10 20:29:54,203 | INFO     | will attempt to kill all subprocesses of pid=3301457
[2026-01-10 15:31:01] 2026-01-10 20:29:57,200 | INFO     | PID=3263835 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 15:31:01] 2026-01-10 20:29:57,200 | INFO     | .. there are 42 such processes running
[2026-01-10 15:31:01] 2026-01-10 20:29:58,732 | INFO     | process IDs to be killed: [3301457] (in reverse order)
[2026-01-10 15:31:01] 2026-01-10 20:29:59,369 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 15:31:01] 2026-01-10 20:29:59,369 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 15:31:01] 2026-01-10 20:29:59,649 | INFO     | did not find any defunct processes belonging to 3301457
[2026-01-10 15:31:01] 2026-01-10 20:29:59,932 | INFO     | did not find any defunct processes belonging to 3301457
[2026-01-10 15:31:01] 2026-01-10 20:29:59,932 | INFO     | ready for new job
[2026-01-10 15:31:01] 2026-01-10 20:29:59,933 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 15:31:01] 2026-01-10 20:29:59,935 | INFO     | ***************************************
[2026-01-10 15:31:01] 2026-01-10 20:29:59,986 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 15:31:01] 2026-01-10 20:29:59,986 | INFO     | ***************************************
[2026-01-10 15:31:01] 2026-01-10 20:29:59,986 | INFO     | 
[2026-01-10 15:31:01] 2026-01-10 20:29:59,989 | INFO     | architecture information:
[2026-01-10 15:31:01] 2026-01-10 20:30:00,005 | INFO     | executing command: cat /etc/os-release
[2026-01-10 15:31:01] 2026-01-10 20:30:00,156 | INFO     | cat /etc/os-release:
[2026-01-10 15:31:01] NAME="CentOS Linux"
[2026-01-10 15:31:01] VERSION="7 (Core)"
[2026-01-10 15:31:01] ID="centos"
[2026-01-10 15:31:01] ID_LIKE="rhel fedora"
[2026-01-10 15:31:01] VERSION_ID="7"
[2026-01-10 15:31:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 15:31:01] ANSI_COLOR="0;31"
[2026-01-10 15:31:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 15:31:01] HOME_URL="https://www.centos.org/"
[2026-01-10 15:31:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 15:31:01] 
[2026-01-10 15:31:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 15:31:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 15:31:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 15:31:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 15:31:01] 
[2026-01-10 15:31:01] 2026-01-10 20:30:00,156 | INFO     | ***************************************
[2026-01-10 15:31:01] 2026-01-10 20:30:00,659 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 15:31:01] 2026-01-10 20:30:00,793 | INFO     | sufficient remaining disk space (62364057600 B)
[2026-01-10 15:31:01] 2026-01-10 20:30:00,793 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 15:31:01] 2026-01-10 20:30:00,793 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 15:31:01] 2026-01-10 20:30:00,794 | INFO     | update_server=False
[2026-01-10 15:31:01] 2026-01-10 20:30:00,794 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 15:31:01] 2026-01-10 20:30:00,795 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 15:31:01] 2026-01-10 20:30:00,803 | INFO     | all payload control threads have been joined
[2026-01-10 15:31:01] 2026-01-10 20:30:00,896 | INFO     | all data control threads have been joined
[2026-01-10 15:31:01] 2026-01-10 20:30:01,768 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 15:31:01] 2026-01-10 20:30:01,793 | INFO     | aborting loop
[2026-01-10 15:31:01] 2026-01-10 20:30:01,807 | INFO     | [job] retrieve thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:01,811 | INFO     | [payload] control thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:01,823 | INFO     | [data] copytool_in thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:01,902 | INFO     | [data] control thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:01,936 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 15:31:01] 2026-01-10 20:30:02,136 | INFO     | all job control threads have been joined
[2026-01-10 15:31:01] 2026-01-10 20:30:02,356 | INFO     | [payload] failed_post thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:02,401 | INFO     | [payload] validate_post thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:02,522 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:02,523 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:02,541 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:02,541 | INFO     | [job] validate thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:02,799 | INFO     | [job] job monitor thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:02,802 | INFO     | [data] copytool_out thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:02,942 | INFO     | [job] queue monitor thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:03,067 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 15:31:01] 2026-01-10 20:30:03,149 | INFO     | [job] control thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:03,247 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:07,081 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 15:31:01] 2026-01-10 20:30:36,079 | INFO     | PID=3263835 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 15:31:01] 2026-01-10 20:30:36,080 | INFO     | .. there are 42 such processes running
[2026-01-10 15:31:01] 2026-01-10 20:30:36,081 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 15:31:01] 2026-01-10 20:30:36,081 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 15:31:01] 2026-01-10 20:30:36,099 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 15:31:01] 2026-01-10 20:30:51,786 | INFO     | [monitor] cgroup control has ended
[2026-01-10 15:31:01] 2026-01-10 20:30:53,234 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140491279292224)>', '<ExcThread(monitor, started 140490754205440)>']
[2026-01-10 15:31:01] 2026-01-10 20:30:54,214 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 15:31:01] 2026-01-10 20:30:54,214 | INFO     | [monitor] control thread has ended
[2026-01-10 15:31:01] 2026-01-10 20:30:58,260 | INFO     | all workflow threads have been joined
[2026-01-10 15:31:01] 2026-01-10 20:30:58,269 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 15:31:01] 2026-01-10 20:30:58,270 | INFO     | traces error code: 0
[2026-01-10 15:31:01] 2026-01-10 20:30:58,270 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 15:31:01] 2026-01-10 20:30:59,836 [wrapper] ==== pilot stdout END ====
[2026-01-10 15:31:01] 2026-01-10 20:30:59,863 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 15:31:01] 2026-01-10 20:30:59,890 [wrapper] pilotpid: 3263835
[2026-01-10 15:31:01] 2026-01-10 20:30:59,896 [wrapper] Pilot exit status: 0
[2026-01-10 15:31:01] 2026-01-10 20:31:00,133 [wrapper] pandaids: 6965384378
[2026-01-10 15:31:01] 2026-01-10 20:31:00,750 [wrapper] cleanup supervisor_pilot 1875139 3263836
[2026-01-10 15:31:01] 2026-01-10 20:31:00,763 [wrapper] Test setup, not cleaning
[2026-01-10 15:31:01] 2026-01-10 20:31:00,787 [wrapper] apfmon messages muted
[2026-01-10 15:31:01] 2026-01-10 20:31:00,801 [wrapper] ==== wrapper stdout END ====
[2026-01-10 15:31:01] 2026-01-10 20:31:00,818 [wrapper] ==== wrapper stderr END ====
[2026-01-10 15:31:01]  *** Error codes and diagnostics ***
[2026-01-10 15:31:01]     "exeErrorCode": 0,
[2026-01-10 15:31:01]     "exeErrorDiag": "",
[2026-01-10 15:31:01]     "pilotErrorCode": 0,
[2026-01-10 15:31:01]     "pilotErrorDiag": "",
[2026-01-10 15:31:01]  *** Listing of results directory ***
[2026-01-10 15:31:01] total 439888
[2026-01-10 15:31:01] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:09 pilot3.tar.gz
[2026-01-10 15:31:01] -rwx------. 1 boincer umatlas     36322 Jan 10 08:11 runpilot2-wrapper.sh
[2026-01-10 15:31:01] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:11 queuedata.json
[2026-01-10 15:31:01] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 15:31:01] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:31 run_atlas
[2026-01-10 15:31:01] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:31 job.xml
[2026-01-10 15:31:01] -rw-r--r--. 2 boincer umatlas 391182854 Jan 10 08:31 EVNT.47962006._000032.pool.root.1
[2026-01-10 15:31:01] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:31 start_atlas.sh
[2026-01-10 15:31:01] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:31 shared
[2026-01-10 15:31:01] -rw-r--r--. 2 boincer umatlas    592618 Jan 10 08:31 input.tar.gz
[2026-01-10 15:31:01] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:31 boinc_lockfile
[2026-01-10 15:31:01] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 08:31 pandaJob.out
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas        57 Jan 10 08:31 setup.sh.local
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas    989556 Jan 10 08:32 agis_schedconf.cvmfs.json
[2026-01-10 15:31:01] drwx------. 5 boincer umatlas      4096 Jan 10 08:33 pilot3
[2026-01-10 15:31:01] -rw-r--r--. 1 boincer umatlas       531 Jan 10 13:57 boinc_task_state.xml
[2026-01-10 15:31:01] -rw-r--r--. 1 boincer umatlas      6612 Jan 10 15:21 init_data.xml
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas  47452534 Jan 10 15:28 HITS.47962010._002514.pool.root.1
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas      1047 Jan 10 15:28 memory_monitor_summary.json
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas   1516240 Jan 10 15:28 agis_ddmendpoints.agis.ALL.json
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas   1402646 Jan 10 15:29 log.47962010._002514.job.log.tgz.1
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas        95 Jan 10 15:29 pilot_heartbeat.json
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas      8574 Jan 10 15:29 heartbeat.json
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas      4824 Jan 10 15:30 pilotlog.txt
[2026-01-10 15:31:01] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 15:30 boinc_mmap_file
[2026-01-10 15:31:01] -rw-r--r--. 1 boincer umatlas        28 Jan 10 15:30 wrapper_checkpoint.txt
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas   2543339 Jan 10 15:31 log.47962010._002514.job.log.1
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas       353 Jan 10 15:31 output.list
[2026-01-10 15:31:01] -rw-r--r--. 1 boincer umatlas       620 Jan 10 15:31 runtime_log
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas   3962880 Jan 10 15:31 result.tar.gz
[2026-01-10 15:31:01] -rw-r--r--. 1 boincer umatlas      9338 Jan 10 15:31 runtime_log.err
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas       656 Jan 10 15:31 iYcNDmHvny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXmmKDmqI4PVn.diag
[2026-01-10 15:31:01] -rw-r--r--. 1 boincer umatlas     21702 Jan 10 15:31 stderr.txt
[2026-01-10 15:31:01] HITS file was successfully produced:
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas 47452534 Jan 10 15:28 shared/HITS.pool.root.1
[2026-01-10 15:31:01]  *** Contents of shared directory: ***
[2026-01-10 15:31:01] total 432832
[2026-01-10 15:31:01] -rw-r--r--. 2 boincer umatlas 391182854 Jan 10 08:31 ATLAS.root_0
[2026-01-10 15:31:01] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:31 start_atlas.sh
[2026-01-10 15:31:01] -rw-r--r--. 2 boincer umatlas    592618 Jan 10 08:31 input.tar.gz
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas  47452534 Jan 10 15:28 HITS.pool.root.1
[2026-01-10 15:31:01] -rw-------. 1 boincer umatlas   3962880 Jan 10 15:31 result.tar.gz
15:31:24 (3253084): run_atlas exited; CPU time 24445.380434
15:31:24 (3253084): called boinc_finish(0)

</stderr_txt>
]]>

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