Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:36:55 (220346): wrapper (7.7.26015): starting
08:36:55 (220346): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 08:36:55] Arguments: --nthreads 8
[2026-01-10 08:36:55] Threads: 8
[2026-01-10 08:36:55] Checking for CVMFS
[2026-01-10 08:36:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:36:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:36:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:36:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:36:57] 2.13.3.0 5955 55577 397692 154981 1 203 27506194 32935937 11947 16776704 0 120169291 99.337 242805977 41452 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 08:36:57] CVMFS is ok
[2026-01-10 08:36:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:36:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:36:57] Further information can be found at the LHC@home message board.
[2026-01-10 08:36:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:36:57] Checking for apptainer binary...
[2026-01-10 08:36:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:36:57] Running /usr/bin/apptainer --version
[2026-01-10 08:36:57] apptainer version 1.4.5-2.el9
[2026-01-10 08:36:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:36:58] c6-1-24-4.aglt2.org
[2026-01-10 08:36:58] apptainer works
[2026-01-10 08:36:58] Set ATHENA_PROC_NUMBER=8
[2026-01-10 08:36:58] Set ATHENA_CORE_NUMBER=8
[2026-01-10 08:36:58] Starting ATLAS job with PandaID=6965382661
[2026-01-10 08:36:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 12:48:11]  *** The last 200 lines of the pilot log: ***
[2026-01-10 12:48:11] 2026-01-10 17:47:22,959 | INFO     | number of running child processes to parent process 236111: 1
[2026-01-10 12:48:11] 2026-01-10 17:47:22,959 | INFO     | maximum number of monitored processes: 6
[2026-01-10 12:48:11] 2026-01-10 17:47:23,589 | INFO     | time since job start (14984s) is within the limit (349056.0s)
[2026-01-10 12:48:11] 2026-01-10 17:47:25,497 | INFO     | monitor loop #969: job 0:6965382661 is in state 'finished'
[2026-01-10 12:48:11] 2026-01-10 17:47:25,498 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:48:11] 2026-01-10 17:47:25,600 | INFO     | time since job start (14986s) is within the limit (349056.0s)
[2026-01-10 12:48:11] 2026-01-10 17:47:27,607 | INFO     | time since job start (14988s) is within the limit (349056.0s)
[2026-01-10 12:48:11] 2026-01-10 17:47:28,002 | INFO     | monitor loop #970: job 0:6965382661 is in state 'finished'
[2026-01-10 12:48:11] 2026-01-10 17:47:28,002 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:48:11] 2026-01-10 17:47:29,374 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 12:48:11] 2026-01-10 17:47:29,378 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3058.607196428572
[2026-01-10 12:48:11] 2026-01-10 17:47:29,387 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965382661/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 12:48:11] 2026-01-10 17:47:29,387 | INFO     | extracted standard info from prmon json
[2026-01-10 12:48:11] 2026-01-10 17:47:29,387 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 12:48:11] 2026-01-10 17:47:29,387 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 12:48:11] 2026-01-10 17:47:29,388 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 12:48:11] 2026-01-10 17:47:29,388 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 12:48:11] 2026-01-10 17:47:29,392 | INFO     | fitting pss+swap vs Time
[2026-01-10 12:48:11] 2026-01-10 17:47:29,393 | INFO     | sum of square deviations: 4560050887.983698
[2026-01-10 12:48:11] 2026-01-10 17:47:29,394 | INFO     | sum of deviations: -20405004215.004086
[2026-01-10 12:48:11] 2026-01-10 17:47:29,394 | INFO     | mean x: 1768059779.0081632
[2026-01-10 12:48:11] 2026-01-10 17:47:29,394 | INFO     | mean y: 2552076.5020408165
[2026-01-10 12:48:11] 2026-01-10 17:47:29,394 | INFO     | intersect: 7914145198.874613
[2026-01-10 12:48:11] 2026-01-10 17:47:29,395 | INFO     | chi2: 2.8762745540700507
[2026-01-10 12:48:11] 2026-01-10 17:47:29,395 | INFO     | sum of square deviations: 4286535975.962482
[2026-01-10 12:48:11] 2026-01-10 17:47:29,396 | INFO     | sum of deviations: -4963864933.000003
[2026-01-10 12:48:11] 2026-01-10 17:47:29,397 | INFO     | mean x: 1768059626.5125
[2026-01-10 12:48:11] 2026-01-10 17:47:29,397 | INFO     | mean y: 2560542.6666666665
[2026-01-10 12:48:11] 2026-01-10 17:47:29,397 | INFO     | intersect: 2049996800.9212964
[2026-01-10 12:48:11] 2026-01-10 17:47:29,397 | INFO     | chi2: 2.20957194473991
[2026-01-10 12:48:11] 2026-01-10 17:47:29,397 | INFO     | current chi2=2.20957194473991 (change=23.17938002082341 %)
[2026-01-10 12:48:11] 2026-01-10 17:47:29,397 | INFO     | right removable region: 239
[2026-01-10 12:48:11] 2026-01-10 17:47:29,398 | INFO     | sum of square deviations: 4286444837.7958293
[2026-01-10 12:48:11] 2026-01-10 17:47:29,399 | INFO     | sum of deviations: -66081671514.133316
[2026-01-10 12:48:11] 2026-01-10 17:47:29,399 | INFO     | mean x: 1768059931.5291667
[2026-01-10 12:48:11] 2026-01-10 17:47:29,399 | INFO     | mean y: 2577343.7333333334
[2026-01-10 12:48:11] 2026-01-10 17:47:29,399 | INFO     | intersect: 27259747337.47829
[2026-01-10 12:48:11] 2026-01-10 17:47:29,400 | INFO     | chi2: 1.0915249624411087
[2026-01-10 12:48:11] 2026-01-10 17:47:29,400 | INFO     | current chi2=1.0915249624411087 (change=62.0507381363662 %)
[2026-01-10 12:48:11] 2026-01-10 17:47:29,400 | INFO     | sum of square deviations: 4024030823.574455
[2026-01-10 12:48:11] 2026-01-10 17:47:29,401 | INFO     | sum of deviations: -62423765089.21279
[2026-01-10 12:48:11] 2026-01-10 17:47:29,401 | INFO     | mean x: 1768060084.0425532
[2026-01-10 12:48:11] 2026-01-10 17:47:29,402 | INFO     | mean y: 2575187.0212765955
[2026-01-10 12:48:11] 2026-01-10 17:47:29,402 | INFO     | intersect: 27430040877.218933
[2026-01-10 12:48:11] 2026-01-10 17:47:29,402 | INFO     | chi2: 1.07841312867511
[2026-01-10 12:48:11] 2026-01-10 17:47:29,402 | INFO     | current chi2=1.07841312867511 (change=1.2012399365265278 %)
[2026-01-10 12:48:11] 2026-01-10 17:47:29,402 | INFO     | left removable region: 20
[2026-01-10 12:48:11] 2026-01-10 17:47:29,402 | INFO     | sum of square deviations: 3256800142.630151
[2026-01-10 12:48:11] 2026-01-10 17:47:29,404 | INFO     | sum of deviations: -24736686465.835594
[2026-01-10 12:48:11] 2026-01-10 17:47:29,404 | INFO     | mean x: 1768060206.041096
[2026-01-10 12:48:11] 2026-01-10 17:47:29,404 | INFO     | mean y: 2570212.9817351596
[2026-01-10 12:48:11] 2026-01-10 17:47:29,404 | INFO     | intersect: 13431687461.250666
[2026-01-10 12:48:11] 2026-01-10 17:47:29,404 | INFO     | chi2: 0.30267072823393093
[2026-01-10 12:48:11] 2026-01-10 17:47:29,404 | INFO     | current memory leak: -7.60 B/s (using 219 data points, chi2=0.30)
[2026-01-10 12:48:11] 2026-01-10 17:47:29,405 | INFO     | could have reported an average CPU frequency of 3082 MHz (12 samples)
[2026-01-10 12:48:11] 2026-01-10 17:47:29,405 | INFO     | ..............................
[2026-01-10 12:48:11] 2026-01-10 17:47:29,405 | INFO     | . Timing measurements:
[2026-01-10 12:48:11] 2026-01-10 17:47:29,405 | INFO     | . get job = 0 s
[2026-01-10 12:48:11] 2026-01-10 17:47:29,405 | INFO     | . initial setup = 3 s
[2026-01-10 12:48:11] 2026-01-10 17:47:29,405 | INFO     | . payload setup = 17 s
[2026-01-10 12:48:11] 2026-01-10 17:47:29,405 | INFO     | . stage-in = 0 s
[2026-01-10 12:48:11] 2026-01-10 17:47:29,405 | INFO     | . payload execution = 14913 s
[2026-01-10 12:48:11] 2026-01-10 17:47:29,406 | INFO     | . stage-out = 2 s
[2026-01-10 12:48:11] 2026-01-10 17:47:29,406 | INFO     | . log creation = 0 s
[2026-01-10 12:48:11] 2026-01-10 17:47:29,406 | INFO     | ..............................
[2026-01-10 12:48:11] 2026-01-10 17:47:29,489 | INFO     | 
[2026-01-10 12:48:11] 2026-01-10 17:47:29,489 | INFO     | job summary report
[2026-01-10 12:48:11] 2026-01-10 17:47:29,490 | INFO     | --------------------------------------------------
[2026-01-10 12:48:11] 2026-01-10 17:47:29,490 | INFO     | PanDA job id: 6965382661
[2026-01-10 12:48:11] 2026-01-10 17:47:29,490 | INFO     | task id: 47898826
[2026-01-10 12:48:11] 2026-01-10 17:47:29,490 | INFO     | errors: (none)
[2026-01-10 12:48:11] 2026-01-10 17:47:29,490 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 12:48:11] 2026-01-10 17:47:29,490 | INFO     | pilot state: finished 
[2026-01-10 12:48:11] 2026-01-10 17:47:29,490 | INFO     | transexitcode: 0
[2026-01-10 12:48:11] 2026-01-10 17:47:29,490 | INFO     | exeerrorcode: 0
[2026-01-10 12:48:11] 2026-01-10 17:47:29,490 | INFO     | exeerrordiag: 
[2026-01-10 12:48:11] 2026-01-10 17:47:29,490 | INFO     | exitcode: 0
[2026-01-10 12:48:11] 2026-01-10 17:47:29,490 | INFO     | exitmsg: OK
[2026-01-10 12:48:11] 2026-01-10 17:47:29,490 | INFO     | cpuconsumptiontime: 57369 s
[2026-01-10 12:48:11] 2026-01-10 17:47:29,490 | INFO     | nevents: 400
[2026-01-10 12:48:11] 2026-01-10 17:47:29,490 | INFO     | neventsw: 0
[2026-01-10 12:48:11] 2026-01-10 17:47:29,491 | INFO     | pid: 236111
[2026-01-10 12:48:11] 2026-01-10 17:47:29,491 | INFO     | pgrp: 236111
[2026-01-10 12:48:11] 2026-01-10 17:47:29,491 | INFO     | corecount: 8
[2026-01-10 12:48:11] 2026-01-10 17:47:29,491 | INFO     | event service: False
[2026-01-10 12:48:11] 2026-01-10 17:47:29,491 | INFO     | sizes: {0: 2283090, 1: 2283775, 2: 2283974, 13: 2283974, 20: 2284292, 24: 2284320, 14934: 2315644, 14937: 2324642, 14940: 2324698, 14947: 2324892}
[2026-01-10 12:48:11] 2026-01-10 17:47:29,491 | INFO     | --------------------------------------------------
[2026-01-10 12:48:11] 2026-01-10 17:47:29,491 | INFO     | 
[2026-01-10 12:48:11] 2026-01-10 17:47:29,491 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 12:48:11] 2026-01-10 17:47:29,510 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,510 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,510 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,510 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,510 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,511 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,511 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,511 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,511 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,511 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,512 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,512 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,512 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,512 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,512 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,512 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,512 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,512 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 12:48:11] 2026-01-10 17:47:29,513 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,513 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 12:48:11] 2026-01-10 17:47:29,513 | INFO     | job 6965382661 has completed (purged errors)
[2026-01-10 12:48:11] 2026-01-10 17:47:29,513 | INFO     | overall cleanup function is called
[2026-01-10 12:48:11] 2026-01-10 17:47:30,521 | INFO     | --- collectZombieJob: --- 10, [236111]
[2026-01-10 12:48:11] 2026-01-10 17:47:30,521 | INFO     | zombie collector waiting for pid 236111
[2026-01-10 12:48:11] 2026-01-10 17:47:30,522 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 12:48:11] 2026-01-10 17:47:30,522 | INFO     | collected zombie processes
[2026-01-10 12:48:11] 2026-01-10 17:47:30,522 | INFO     | will attempt to kill all subprocesses of pid=236111
[2026-01-10 12:48:11] 2026-01-10 17:47:31,086 | INFO     | process IDs to be killed: [236111] (in reverse order)
[2026-01-10 12:48:11] 2026-01-10 17:47:31,188 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 12:48:11] 2026-01-10 17:47:31,189 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 12:48:11] 2026-01-10 17:47:31,229 | INFO     | did not find any defunct processes belonging to 236111
[2026-01-10 12:48:11] 2026-01-10 17:47:31,242 | INFO     | did not find any defunct processes belonging to 236111
[2026-01-10 12:48:11] 2026-01-10 17:47:31,242 | INFO     | ready for new job
[2026-01-10 12:48:11] 2026-01-10 17:47:31,242 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 12:48:11] 2026-01-10 17:47:31,267 | INFO     | ***************************************
[2026-01-10 12:48:11] 2026-01-10 17:47:31,268 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 12:48:11] 2026-01-10 17:47:31,268 | INFO     | ***************************************
[2026-01-10 12:48:11] 2026-01-10 17:47:31,268 | INFO     | 
[2026-01-10 12:48:11] 2026-01-10 17:47:31,271 | INFO     | architecture information:
[2026-01-10 12:48:11] 2026-01-10 17:47:31,292 | INFO     | executing command: cat /etc/os-release
[2026-01-10 12:48:11] 2026-01-10 17:47:31,339 | INFO     | cat /etc/os-release:
[2026-01-10 12:48:11] NAME="CentOS Linux"
[2026-01-10 12:48:11] VERSION="7 (Core)"
[2026-01-10 12:48:11] ID="centos"
[2026-01-10 12:48:11] ID_LIKE="rhel fedora"
[2026-01-10 12:48:11] VERSION_ID="7"
[2026-01-10 12:48:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 12:48:11] ANSI_COLOR="0;31"
[2026-01-10 12:48:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 12:48:11] HOME_URL="https://www.centos.org/"
[2026-01-10 12:48:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 12:48:11] 
[2026-01-10 12:48:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 12:48:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 12:48:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 12:48:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 12:48:11] 
[2026-01-10 12:48:11] 2026-01-10 17:47:31,340 | INFO     | ***************************************
[2026-01-10 12:48:11] 2026-01-10 17:47:31,843 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 12:48:11] 2026-01-10 17:47:31,909 | INFO     | sufficient remaining disk space (75211210752 B)
[2026-01-10 12:48:11] 2026-01-10 17:47:31,910 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 12:48:11] 2026-01-10 17:47:31,910 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 12:48:11] 2026-01-10 17:47:31,910 | INFO     | update_server=False
[2026-01-10 12:48:11] 2026-01-10 17:47:31,910 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 12:48:11] 2026-01-10 17:47:31,910 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:48:11] 2026-01-10 17:47:31,911 | INFO     | aborting loop
[2026-01-10 12:48:11] 2026-01-10 17:47:31,911 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 12:48:11] 2026-01-10 17:47:32,147 | INFO     | all payload control threads have been joined
[2026-01-10 12:48:11] 2026-01-10 17:47:32,297 | INFO     | all job control threads have been joined
[2026-01-10 12:48:11] 2026-01-10 17:47:32,393 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 12:48:11] 2026-01-10 17:47:32,494 | INFO     | all data control threads have been joined
[2026-01-10 12:48:11] 2026-01-10 17:47:32,916 | INFO     | [job] retrieve thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:47:32,917 | INFO     | [job] job monitor thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:47:33,063 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:47:33,153 | INFO     | [payload] control thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:47:33,303 | INFO     | [job] control thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:47:33,466 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:47:33,500 | INFO     | [data] control thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:47:33,528 | INFO     | [payload] validate_post thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:47:33,895 | INFO     | [payload] failed_post thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:47:33,917 | INFO     | [data] copytool_out thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:47:33,953 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:47:34,123 | INFO     | [job] validate thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:47:34,147 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:47:34,324 | INFO     | [data] copytool_in thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:47:34,526 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:48:11] 2026-01-10 17:47:35,532 | INFO     | [job] queue monitor thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:47:36,402 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 12:48:11] 2026-01-10 17:48:02,261 | INFO     | PID=226594 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 12:48:11] 2026-01-10 17:48:02,262 | INFO     | .. there are 15 such processes running
[2026-01-10 12:48:11] 2026-01-10 17:48:02,262 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 12:48:11] 2026-01-10 17:48:02,262 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 12:48:11] 2026-01-10 17:48:02,262 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 12:48:11] 2026-01-10 17:48:04,680 | INFO     | [monitor] cgroup control has ended
[2026-01-10 12:48:11] 2026-01-10 17:48:04,714 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139747730626368)>', '<ExcThread(monitor, started 139747380926208)>']
[2026-01-10 12:48:11] 2026-01-10 17:48:05,279 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 12:48:11] 2026-01-10 17:48:05,279 | INFO     | [monitor] control thread has ended
[2026-01-10 12:48:11] 2026-01-10 17:48:09,740 | INFO     | all workflow threads have been joined
[2026-01-10 12:48:11] 2026-01-10 17:48:09,740 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 12:48:11] 2026-01-10 17:48:09,741 | INFO     | traces error code: 0
[2026-01-10 12:48:11] 2026-01-10 17:48:09,741 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 12:48:11] 2026-01-10 17:48:10,810 [wrapper] ==== pilot stdout END ====
[2026-01-10 12:48:11] 2026-01-10 17:48:10,863 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 12:48:11] 2026-01-10 17:48:10,881 [wrapper] pilotpid: 226594
[2026-01-10 12:48:11] 2026-01-10 17:48:10,890 [wrapper] Pilot exit status: 0
[2026-01-10 12:48:11] 2026-01-10 17:48:10,912 [wrapper] pandaids: 6965382661
[2026-01-10 12:48:11] 2026-01-10 17:48:10,980 [wrapper] cleanup supervisor_pilot 1158649 226595
[2026-01-10 12:48:11] 2026-01-10 17:48:10,989 [wrapper] Test setup, not cleaning
[2026-01-10 12:48:11] 2026-01-10 17:48:10,993 [wrapper] apfmon messages muted
[2026-01-10 12:48:11] 2026-01-10 17:48:10,997 [wrapper] ==== wrapper stdout END ====
[2026-01-10 12:48:11] 2026-01-10 17:48:10,999 [wrapper] ==== wrapper stderr END ====
[2026-01-10 12:48:11]  *** Error codes and diagnostics ***
[2026-01-10 12:48:11]     "exeErrorCode": 0,
[2026-01-10 12:48:11]     "exeErrorDiag": "",
[2026-01-10 12:48:11]     "pilotErrorCode": 0,
[2026-01-10 12:48:11]     "pilotErrorDiag": "",
[2026-01-10 12:48:11]  *** Listing of results directory ***
[2026-01-10 12:48:11] total 446772
[2026-01-10 12:48:11] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:09 queuedata.json
[2026-01-10 12:48:11] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:09 pilot3.tar.gz
[2026-01-10 12:48:11] -rwx------. 1 boincer umatlas     36322 Jan 10 08:10 runpilot2-wrapper.sh
[2026-01-10 12:48:11] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 12:48:11] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:36 run_atlas
[2026-01-10 12:48:11] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:36 job.xml
[2026-01-10 12:48:11] -rw-r--r--. 2 boincer umatlas 223844686 Jan 10 08:36 EVNT.47898824._000967.pool.root.1
[2026-01-10 12:48:11] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:36 start_atlas.sh
[2026-01-10 12:48:11] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:36 shared
[2026-01-10 12:48:11] -rw-r--r--. 2 boincer umatlas    592408 Jan 10 08:36 input.tar.gz
[2026-01-10 12:48:11] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:36 boinc_lockfile
[2026-01-10 12:48:11] -rw-r--r--. 1 boincer umatlas      2518 Jan 10 08:36 pandaJob.out
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas        57 Jan 10 08:36 setup.sh.local
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas    989556 Jan 10 08:37 agis_schedconf.cvmfs.json
[2026-01-10 12:48:11] drwx------. 5 boincer umatlas      4096 Jan 10 08:37 pilot3
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas 224834190 Jan 10 12:46 HITS.47898826._040237.pool.root.1
[2026-01-10 12:48:11] -rw-r--r--. 1 boincer umatlas       530 Jan 10 12:46 boinc_task_state.xml
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas        95 Jan 10 12:47 pilot_heartbeat.json
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas      1042 Jan 10 12:47 memory_monitor_summary.json
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas   1516240 Jan 10 12:47 agis_ddmendpoints.agis.ALL.json
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas    467800 Jan 10 12:47 log.47898826._040237.job.log.tgz.1
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas      7816 Jan 10 12:47 heartbeat.json
[2026-01-10 12:48:11] -rw-r--r--. 1 boincer umatlas      6843 Jan 10 12:47 init_data.xml
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas      4823 Jan 10 12:48 pilotlog.txt
[2026-01-10 12:48:11] -rw-r--r--. 1 boincer umatlas        27 Jan 10 12:48 wrapper_checkpoint.txt
[2026-01-10 12:48:11] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 12:48 boinc_mmap_file
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas   1979804 Jan 10 12:48 log.47898826._040237.job.log.1
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas       357 Jan 10 12:48 output.list
[2026-01-10 12:48:11] -rw-r--r--. 1 boincer umatlas       620 Jan 10 12:48 runtime_log
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas   2467840 Jan 10 12:48 result.tar.gz
[2026-01-10 12:48:11] -rw-r--r--. 1 boincer umatlas      9348 Jan 10 12:48 runtime_log.err
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas       658 Jan 10 12:48 HQSNDmTuny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9jmKDmo5w9Gm.diag
[2026-01-10 12:48:11] -rw-r--r--. 1 boincer umatlas     21386 Jan 10 12:48 stderr.txt
[2026-01-10 12:48:11] HITS file was successfully produced:
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas 224834190 Jan 10 12:46 shared/HITS.pool.root.1
[2026-01-10 12:48:11]  *** Contents of shared directory: ***
[2026-01-10 12:48:11] total 441180
[2026-01-10 12:48:11] -rw-r--r--. 2 boincer umatlas 223844686 Jan 10 08:36 ATLAS.root_0
[2026-01-10 12:48:11] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:36 start_atlas.sh
[2026-01-10 12:48:11] -rw-r--r--. 2 boincer umatlas    592408 Jan 10 08:36 input.tar.gz
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas 224834190 Jan 10 12:46 HITS.pool.root.1
[2026-01-10 12:48:11] -rw-------. 1 boincer umatlas   2467840 Jan 10 12:48 result.tar.gz
12:48:13 (220346): run_atlas exited; CPU time 57821.117503
12:48:13 (220346): called boinc_finish(0)

</stderr_txt>
]]>

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