Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:39:47 (76135): wrapper (7.7.26015): starting
08:39:47 (76135): wrapper: running run_atlas (--nthreads 9)
[2026-01-10 08:39:47] Arguments: --nthreads 9
[2026-01-10 08:39:47] Threads: 9
[2026-01-10 08:39:47] Checking for CVMFS
[2026-01-10 08:39:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:39:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:39:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:39:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:39:49] 2.13.3.0 11585 24389 148336 154981 0 177 22623352 40960001 19730 16776704 0 42183804 99.750 26499208 36866 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 08:39:49] CVMFS is ok
[2026-01-10 08:39:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:39:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:39:49] Further information can be found at the LHC@home message board.
[2026-01-10 08:39:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:39:49] Checking for apptainer binary...
[2026-01-10 08:39:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:39:49] Running /usr/bin/apptainer --version
[2026-01-10 08:39:50] apptainer version 1.4.5-2.el9
[2026-01-10 08:39:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:39:50] c-212-9.aglt2.org
[2026-01-10 08:39:50] apptainer works
[2026-01-10 08:39:51] Set ATHENA_PROC_NUMBER=9
[2026-01-10 08:39:51] Set ATHENA_CORE_NUMBER=9
[2026-01-10 08:39:51] Starting ATLAS job with PandaID=6965382643
[2026-01-10 08:39:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 10:39:48]  *** The last 200 lines of the pilot log: ***
[2026-01-10 10:39:48] 2026-01-10 15:39:08,610 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 10:39:48] 2026-01-10 15:39:08,615 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3188.8332708333323
[2026-01-10 10:39:48] 2026-01-10 15:39:08,628 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6965382643/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:39:48] 2026-01-10 15:39:08,629 | INFO     | extracted standard info from prmon json
[2026-01-10 10:39:48] 2026-01-10 15:39:08,629 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 10:39:48] 2026-01-10 15:39:08,629 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 10:39:48] 2026-01-10 15:39:08,630 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 10:39:48] 2026-01-10 15:39:08,630 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 10:39:48] 2026-01-10 15:39:08,632 | INFO     | fitting pss+swap vs Time
[2026-01-10 10:39:48] 2026-01-10 15:39:08,632 | INFO     | sum of square deviations: 483973208.9655173
[2026-01-10 10:39:48] 2026-01-10 15:39:08,632 | INFO     | sum of deviations: 3786949342.655171
[2026-01-10 10:39:48] 2026-01-10 15:39:08,632 | INFO     | mean x: 1768055998.5172415
[2026-01-10 10:39:48] 2026-01-10 15:39:08,633 | INFO     | mean y: 2622539.922413793
[2026-01-10 10:39:48] 2026-01-10 15:39:08,633 | INFO     | intersect: -13831900481.866282
[2026-01-10 10:39:48] 2026-01-10 15:39:08,633 | INFO     | chi2: 2.1880630638038077
[2026-01-10 10:39:48] 2026-01-10 15:39:08,633 | INFO     | sum of square deviations: 424047113.96396345
[2026-01-10 10:39:48] 2026-01-10 15:39:08,633 | INFO     | sum of deviations: 3967594096.6576467
[2026-01-10 10:39:48] 2026-01-10 15:39:08,633 | INFO     | mean x: 1768055846.018018
[2026-01-10 10:39:48] 2026-01-10 15:39:08,634 | INFO     | mean y: 2623000.171171171
[2026-01-10 10:39:48] 2026-01-10 15:39:08,634 | INFO     | intersect: -16540180160.654669
[2026-01-10 10:39:48] 2026-01-10 15:39:08,634 | INFO     | chi2: 2.191947932196982
[2026-01-10 10:39:48] 2026-01-10 15:39:08,634 | INFO     | current chi2=2.191947932196982 (change=-0.1775482826541975 %)
[2026-01-10 10:39:48] 2026-01-10 15:39:08,634 | INFO     | right removable region: 110
[2026-01-10 10:39:48] 2026-01-10 15:39:08,634 | INFO     | sum of square deviations: 424045893.96396345
[2026-01-10 10:39:48] 2026-01-10 15:39:08,634 | INFO     | sum of deviations: -19590589278.207214
[2026-01-10 10:39:48] 2026-01-10 15:39:08,635 | INFO     | mean x: 1768056151.018018
[2026-01-10 10:39:48] 2026-01-10 15:39:08,635 | INFO     | mean y: 2681116.603603604
[2026-01-10 10:39:48] 2026-01-10 15:39:08,635 | INFO     | intersect: 81685495096.0392
[2026-01-10 10:39:48] 2026-01-10 15:39:08,635 | INFO     | chi2: 0.1586238297966681
[2026-01-10 10:39:48] 2026-01-10 15:39:08,635 | INFO     | current chi2=0.1586238297966681 (change=92.75049095153085 %)
[2026-01-10 10:39:48] 2026-01-10 15:39:08,635 | INFO     | sum of square deviations: 369281466.4622636
[2026-01-10 10:39:48] 2026-01-10 15:39:08,635 | INFO     | sum of deviations: -17867067947.198124
[2026-01-10 10:39:48] 2026-01-10 15:39:08,635 | INFO     | mean x: 1768056303.518868
[2026-01-10 10:39:48] 2026-01-10 15:39:08,636 | INFO     | mean y: 2676189.349056604
[2026-01-10 10:39:48] 2026-01-10 15:39:08,636 | INFO     | intersect: 85547132054.07822
[2026-01-10 10:39:48] 2026-01-10 15:39:08,636 | INFO     | chi2: 0.14562439477116162
[2026-01-10 10:39:48] 2026-01-10 15:39:08,636 | INFO     | current chi2=0.14562439477116162 (change=8.195133759013249 %)
[2026-01-10 10:39:48] 2026-01-10 15:39:08,636 | INFO     | left removable region: 20
[2026-01-10 10:39:48] 2026-01-10 15:39:08,636 | INFO     | sum of square deviations: 226022478.45555517
[2026-01-10 10:39:48] 2026-01-10 15:39:08,636 | INFO     | sum of deviations: -9811987373.555557
[2026-01-10 10:39:48] 2026-01-10 15:39:08,636 | INFO     | mean x: 1768056425.5222223
[2026-01-10 10:39:48] 2026-01-10 15:39:08,636 | INFO     | mean y: 2655122.777777778
[2026-01-10 10:39:48] 2026-01-10 15:39:08,637 | INFO     | intersect: 76756734812.10893
[2026-01-10 10:39:48] 2026-01-10 15:39:08,637 | INFO     | chi2: 0.12703565714139262
[2026-01-10 10:39:48] 2026-01-10 15:39:08,637 | INFO     | current memory leak: -43.41 B/s (using 90 data points, chi2=0.13)
[2026-01-10 10:39:48] 2026-01-10 15:39:08,637 | INFO     | could have reported an average CPU frequency of 3175 MHz (7 samples)
[2026-01-10 10:39:48] 2026-01-10 15:39:08,637 | INFO     | ..............................
[2026-01-10 10:39:48] 2026-01-10 15:39:08,637 | INFO     | . Timing measurements:
[2026-01-10 10:39:48] 2026-01-10 15:39:08,637 | INFO     | . get job = 0 s
[2026-01-10 10:39:48] 2026-01-10 15:39:08,637 | INFO     | . initial setup = 4 s
[2026-01-10 10:39:48] 2026-01-10 15:39:08,637 | INFO     | . payload setup = 17 s
[2026-01-10 10:39:48] 2026-01-10 15:39:08,638 | INFO     | . stage-in = 0 s
[2026-01-10 10:39:48] 2026-01-10 15:39:08,638 | INFO     | . payload execution = 7062 s
[2026-01-10 10:39:48] 2026-01-10 15:39:08,638 | INFO     | . stage-out = 0 s
[2026-01-10 10:39:48] 2026-01-10 15:39:08,638 | INFO     | . log creation = 0 s
[2026-01-10 10:39:48] 2026-01-10 15:39:08,638 | INFO     | ..............................
[2026-01-10 10:39:48] 2026-01-10 15:39:08,661 | INFO     | time since job start (7117s) is within the limit (349056.0s)
[2026-01-10 10:39:48] 2026-01-10 15:39:08,709 | INFO     | 
[2026-01-10 10:39:48] 2026-01-10 15:39:08,710 | INFO     | job summary report
[2026-01-10 10:39:48] 2026-01-10 15:39:08,710 | INFO     | --------------------------------------------------
[2026-01-10 10:39:48] 2026-01-10 15:39:08,710 | INFO     | PanDA job id: 6965382643
[2026-01-10 10:39:48] 2026-01-10 15:39:08,710 | INFO     | task id: 47898826
[2026-01-10 10:39:48] 2026-01-10 15:39:08,710 | INFO     | errors: (none)
[2026-01-10 10:39:48] 2026-01-10 15:39:08,710 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 10:39:48] 2026-01-10 15:39:08,710 | INFO     | pilot state: finished 
[2026-01-10 10:39:48] 2026-01-10 15:39:08,710 | INFO     | transexitcode: 0
[2026-01-10 10:39:48] 2026-01-10 15:39:08,710 | INFO     | exeerrorcode: 0
[2026-01-10 10:39:48] 2026-01-10 15:39:08,710 | INFO     | exeerrordiag: 
[2026-01-10 10:39:48] 2026-01-10 15:39:08,710 | INFO     | exitcode: 0
[2026-01-10 10:39:48] 2026-01-10 15:39:08,711 | INFO     | exitmsg: OK
[2026-01-10 10:39:48] 2026-01-10 15:39:08,711 | INFO     | cpuconsumptiontime: 42822 s
[2026-01-10 10:39:48] 2026-01-10 15:39:08,711 | INFO     | nevents: 400
[2026-01-10 10:39:48] 2026-01-10 15:39:08,711 | INFO     | neventsw: 0
[2026-01-10 10:39:48] 2026-01-10 15:39:08,711 | INFO     | pid: 88034
[2026-01-10 10:39:48] 2026-01-10 15:39:08,711 | INFO     | pgrp: 88034
[2026-01-10 10:39:48] 2026-01-10 15:39:08,711 | INFO     | corecount: 9
[2026-01-10 10:39:48] 2026-01-10 15:39:08,711 | INFO     | event service: False
[2026-01-10 10:39:48] 2026-01-10 15:39:08,711 | INFO     | sizes: {0: 2283918, 1: 2283918, 11: 2284208, 12: 2284236, 7083: 2311501, 7085: 2320683, 7089: 2320821}
[2026-01-10 10:39:48] 2026-01-10 15:39:08,711 | INFO     | --------------------------------------------------
[2026-01-10 10:39:48] 2026-01-10 15:39:08,711 | INFO     | 
[2026-01-10 10:39:48] 2026-01-10 15:39:08,711 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-10 10:39:48] 2026-01-10 15:39:08,728 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,728 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,728 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,728 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,728 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,728 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,728 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,729 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,729 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,729 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,729 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,729 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,729 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,729 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,729 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,729 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,729 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,729 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 10:39:48] 2026-01-10 15:39:08,729 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,730 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 10:39:48] 2026-01-10 15:39:08,730 | INFO     | job 6965382643 has completed (purged errors)
[2026-01-10 10:39:48] 2026-01-10 15:39:08,730 | INFO     | overall cleanup function is called
[2026-01-10 10:39:48] 2026-01-10 15:39:09,174 | WARNING  | process 88034 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 10:39:48] 2026-01-10 15:39:09,453 | INFO     | using path: /tmp/boinchome/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:39:48] 2026-01-10 15:39:09,454 | INFO     | using path: /tmp/boinchome/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:39:48] 2026-01-10 15:39:09,455 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-10 10:39:48] 2026-01-10 15:39:09,455 | WARNING  | maxPSS not found in memory monitor output
[2026-01-10 10:39:48] 2026-01-10 15:39:09,734 | INFO     | number of running child processes to parent process 88034: 1
[2026-01-10 10:39:48] 2026-01-10 15:39:09,734 | INFO     | maximum number of monitored processes: 6
[2026-01-10 10:39:48] 2026-01-10 15:39:09,734 | INFO     | aborting job monitoring since job object (job id=6965382643) has expired
[2026-01-10 10:39:48] 2026-01-10 15:39:09,738 | INFO     | --- collectZombieJob: --- 10, [88034]
[2026-01-10 10:39:48] 2026-01-10 15:39:09,739 | INFO     | zombie collector waiting for pid 88034
[2026-01-10 10:39:48] 2026-01-10 15:39:09,739 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 10:39:48] 2026-01-10 15:39:09,739 | INFO     | collected zombie processes
[2026-01-10 10:39:48] 2026-01-10 15:39:09,739 | INFO     | will attempt to kill all subprocesses of pid=88034
[2026-01-10 10:39:48] 2026-01-10 15:39:10,057 | INFO     | process IDs to be killed: [88034] (in reverse order)
[2026-01-10 10:39:48] 2026-01-10 15:39:10,159 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 10:39:48] 2026-01-10 15:39:10,159 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 10:39:48] 2026-01-10 15:39:10,171 | INFO     | did not find any defunct processes belonging to 88034
[2026-01-10 10:39:48] 2026-01-10 15:39:10,182 | INFO     | did not find any defunct processes belonging to 88034
[2026-01-10 10:39:48] 2026-01-10 15:39:10,183 | INFO     | ready for new job
[2026-01-10 10:39:48] 2026-01-10 15:39:10,183 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 10:39:48] 2026-01-10 15:39:10,185 | INFO     | ***************************************
[2026-01-10 10:39:48] 2026-01-10 15:39:10,185 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 10:39:48] 2026-01-10 15:39:10,185 | INFO     | ***************************************
[2026-01-10 10:39:48] 2026-01-10 15:39:10,185 | INFO     | 
[2026-01-10 10:39:48] 2026-01-10 15:39:10,189 | INFO     | architecture information:
[2026-01-10 10:39:48] 2026-01-10 15:39:10,190 | INFO     | executing command: cat /etc/os-release
[2026-01-10 10:39:48] 2026-01-10 15:39:10,205 | INFO     | cat /etc/os-release:
[2026-01-10 10:39:48] NAME="CentOS Linux"
[2026-01-10 10:39:48] VERSION="7 (Core)"
[2026-01-10 10:39:48] ID="centos"
[2026-01-10 10:39:48] ID_LIKE="rhel fedora"
[2026-01-10 10:39:48] VERSION_ID="7"
[2026-01-10 10:39:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 10:39:48] ANSI_COLOR="0;31"
[2026-01-10 10:39:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 10:39:48] HOME_URL="https://www.centos.org/"
[2026-01-10 10:39:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 10:39:48] 
[2026-01-10 10:39:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 10:39:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 10:39:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 10:39:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 10:39:48] 
[2026-01-10 10:39:48] 2026-01-10 15:39:10,206 | INFO     | ***************************************
[2026-01-10 10:39:48] 2026-01-10 15:39:10,709 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-10 10:39:48] 2026-01-10 15:39:10,722 | INFO     | sufficient remaining disk space (129778057216 B)
[2026-01-10 10:39:48] 2026-01-10 15:39:10,722 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 10:39:48] 2026-01-10 15:39:10,722 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 10:39:48] 2026-01-10 15:39:10,722 | INFO     | update_server=False
[2026-01-10 10:39:48] 2026-01-10 15:39:10,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 10:39:48] 2026-01-10 15:39:10,722 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:39:48] 2026-01-10 15:39:10,722 | INFO     | will abort loop
[2026-01-10 10:39:48] 2026-01-10 15:39:10,722 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 10:39:48] 2026-01-10 15:39:11,128 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 10:39:48] 2026-01-10 15:39:11,259 | INFO     | all data control threads have been joined
[2026-01-10 10:39:48] 2026-01-10 15:39:11,727 | INFO     | [job] retrieve thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:11,727 | INFO     | [job] job monitor thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:11,810 | INFO     | all payload control threads have been joined
[2026-01-10 10:39:48] 2026-01-10 15:39:12,087 | INFO     | [payload] validate_post thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:12,264 | INFO     | [data] control thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:12,273 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:12,306 | INFO     | [payload] failed_post thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:12,310 | INFO     | all job control threads have been joined
[2026-01-10 10:39:48] 2026-01-10 15:39:12,325 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:12,561 | INFO     | [data] copytool_in thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:12,562 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:12,728 | INFO     | [data] copytool_out thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:12,811 | INFO     | [payload] control thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:12,847 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:13,066 | INFO     | [job] validate thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:13,316 | INFO     | [job] control thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:13,721 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:39:48] 2026-01-10 15:39:14,722 | INFO     | [job] queue monitor thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:15,135 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 10:39:48] 2026-01-10 15:39:42,111 | INFO     | PID=81184 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 10:39:48] 2026-01-10 15:39:42,111 | INFO     | .. there are 13 such processes running
[2026-01-10 10:39:48] 2026-01-10 15:39:42,112 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 10:39:48] 2026-01-10 15:39:42,112 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 10:39:48] 2026-01-10 15:39:42,112 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 10:39:48] 2026-01-10 15:39:42,410 | INFO     | [monitor] cgroup control has ended
[2026-01-10 10:39:48] 2026-01-10 15:39:43,240 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140044299986752)>', '<ExcThread(monitor, started 140043842742016)>']
[2026-01-10 10:39:48] 2026-01-10 15:39:44,121 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 10:39:48] 2026-01-10 15:39:44,122 | INFO     | [monitor] control thread has ended
[2026-01-10 10:39:48] 2026-01-10 15:39:48,265 | INFO     | all workflow threads have been joined
[2026-01-10 10:39:48] 2026-01-10 15:39:48,269 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 10:39:48] 2026-01-10 15:39:48,269 | INFO     | traces error code: 0
[2026-01-10 10:39:48] 2026-01-10 15:39:48,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 10:39:48] 2026-01-10 15:39:48,393 [wrapper] ==== pilot stdout END ====
[2026-01-10 10:39:48] 2026-01-10 15:39:48,401 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 10:39:48] 2026-01-10 15:39:48,404 [wrapper] pilotpid: 81184
[2026-01-10 10:39:48] 2026-01-10 15:39:48,407 [wrapper] Pilot exit status: 0
[2026-01-10 10:39:48] 2026-01-10 15:39:48,423 [wrapper] pandaids: 6965382643
[2026-01-10 10:39:48] 2026-01-10 15:39:48,506 [wrapper] cleanup supervisor_pilot  312452 81185
[2026-01-10 10:39:48] 2026-01-10 15:39:48,510 [wrapper] Test setup, not cleaning
[2026-01-10 10:39:48] 2026-01-10 15:39:48,513 [wrapper] apfmon messages muted
[2026-01-10 10:39:48] 2026-01-10 15:39:48,516 [wrapper] ==== wrapper stdout END ====
[2026-01-10 10:39:48] 2026-01-10 15:39:48,518 [wrapper] ==== wrapper stderr END ====
[2026-01-10 10:39:48]  *** Error codes and diagnostics ***
[2026-01-10 10:39:48]     "exeErrorCode": 0,
[2026-01-10 10:39:48]     "exeErrorDiag": "",
[2026-01-10 10:39:48]     "pilotErrorCode": 0,
[2026-01-10 10:39:48]     "pilotErrorDiag": "",
[2026-01-10 10:39:48]  *** Listing of results directory ***
[2026-01-10 10:39:48] total 437308
[2026-01-10 10:39:48] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:09 queuedata.json
[2026-01-10 10:39:48] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:09 pilot3.tar.gz
[2026-01-10 10:39:48] -rwx------. 1 boincer umatlas     36322 Jan 10 08:10 runpilot2-wrapper.sh
[2026-01-10 10:39:48] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 10:39:48] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:39 run_atlas
[2026-01-10 10:39:48] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:39 job.xml
[2026-01-10 10:39:48] -rw-r--r--. 2 boincer umatlas 225102265 Jan 10 08:39 EVNT.47898824._000940.pool.root.1
[2026-01-10 10:39:48] -rw-r--r--. 2 boincer umatlas    592410 Jan 10 08:39 input.tar.gz
[2026-01-10 10:39:48] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:39 start_atlas.sh
[2026-01-10 10:39:48] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:39 shared
[2026-01-10 10:39:48] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:39 boinc_lockfile
[2026-01-10 10:39:48] -rw-r--r--. 1 boincer umatlas      2518 Jan 10 08:39 pandaJob.out
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas        57 Jan 10 08:39 setup.sh.local
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas    989556 Jan 10 08:40 agis_schedconf.cvmfs.json
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas   1516240 Jan 10 08:40 agis_ddmendpoints.agis.ALL.json
[2026-01-10 10:39:48] drwx------. 5 boincer umatlas      4096 Jan 10 08:40 pilot3
[2026-01-10 10:39:48] -rw-r--r--. 1 boincer umatlas      6954 Jan 10 10:36 init_data.xml
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas 216017768 Jan 10 10:38 HITS.47898826._040219.pool.root.1
[2026-01-10 10:39:48] -rw-r--r--. 1 boincer umatlas       529 Jan 10 10:38 boinc_task_state.xml
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas      1034 Jan 10 10:38 memory_monitor_summary.json
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas    385389 Jan 10 10:39 log.47898826._040219.job.log.tgz.1
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas      7776 Jan 10 10:39 heartbeat.json
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas        95 Jan 10 10:39 pilot_heartbeat.json
[2026-01-10 10:39:48] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 10:39 boinc_mmap_file
[2026-01-10 10:39:48] -rw-r--r--. 1 boincer umatlas        27 Jan 10 10:39 wrapper_checkpoint.txt
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas      4825 Jan 10 10:39 pilotlog.txt
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas    998970 Jan 10 10:39 log.47898826._040219.job.log.1
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas       357 Jan 10 10:39 output.list
[2026-01-10 10:39:48] -rw-r--r--. 1 boincer umatlas       620 Jan 10 10:39 runtime_log
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas   1402880 Jan 10 10:39 result.tar.gz
[2026-01-10 10:39:48] -rw-r--r--. 1 boincer umatlas      9337 Jan 10 10:39 runtime_log.err
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas       652 Jan 10 10:39 OM9MDmTuny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtjmKDmaVNUJn.diag
[2026-01-10 10:39:48] -rw-r--r--. 1 boincer umatlas     21371 Jan 10 10:39 stderr.txt
[2026-01-10 10:39:48] HITS file was successfully produced:
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas 216017768 Jan 10 10:38 shared/HITS.pool.root.1
[2026-01-10 10:39:48]  *** Contents of shared directory: ***
[2026-01-10 10:39:48] total 432756
[2026-01-10 10:39:48] -rw-r--r--. 2 boincer umatlas 225102265 Jan 10 08:39 ATLAS.root_0
[2026-01-10 10:39:48] -rw-r--r--. 2 boincer umatlas    592410 Jan 10 08:39 input.tar.gz
[2026-01-10 10:39:48] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:39 start_atlas.sh
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas 216017768 Jan 10 10:38 HITS.pool.root.1
[2026-01-10 10:39:48] -rw-------. 1 boincer umatlas   1402880 Jan 10 10:39 result.tar.gz
10:39:50 (76135): run_atlas exited; CPU time 43001.373973
10:39:50 (76135): called boinc_finish(0)

</stderr_txt>
]]>

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