Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:12:17 (32642): wrapper (7.7.26015): starting
08:12:17 (32642): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 08:12:17] Arguments: --nthreads 8
[2026-01-10 08:12:17] Threads: 8
[2026-01-10 08:12:17] Checking for CVMFS
[2026-01-10 08:12:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:12:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:12:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:12:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:12:18] 2.11.2.0 12825 182504 140084 154980 2 16 11092118 18432000 43 130560 0 120157020 99.980 6778940 26265 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 08:12:18] CVMFS is ok
[2026-01-10 08:12:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:12:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:12:18] Further information can be found at the LHC@home message board.
[2026-01-10 08:12:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:12:18] Checking for apptainer binary...
[2026-01-10 08:12:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:12:18] Running /usr/bin/apptainer --version
[2026-01-10 08:12:18] apptainer version 1.3.2-1.el7
[2026-01-10 08:12:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:12:18] c-206-8.aglt2.org
[2026-01-10 08:12:18] apptainer works
[2026-01-10 08:12:18] Set ATHENA_PROC_NUMBER=8
[2026-01-10 08:12:18] Set ATHENA_CORE_NUMBER=8
[2026-01-10 08:12:19] Starting ATLAS job with PandaID=6965382633
[2026-01-10 08:12:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 12:37:03]  *** The last 200 lines of the pilot log: ***
[2026-01-10 12:37:03] 2026-01-10 17:36:00,399 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 12:37:03] 2026-01-10 17:36:00,403 | INFO     | fitting pss+swap vs Time
[2026-01-10 12:37:03] 2026-01-10 17:36:00,403 | INFO     | sum of square deviations: 5387301010.0
[2026-01-10 12:37:03] 2026-01-10 17:36:00,405 | INFO     | sum of deviations: 54689736904.00002
[2026-01-10 12:37:03] 2026-01-10 17:36:00,405 | INFO     | mean x: 1768058646.0
[2026-01-10 12:37:03] 2026-01-10 17:36:00,405 | INFO     | mean y: 2482544.1776061775
[2026-01-10 12:37:03] 2026-01-10 17:36:00,405 | INFO     | intersect: -17946145535.28115
[2026-01-10 12:37:03] 2026-01-10 17:36:00,406 | INFO     | chi2: 1.3540340196229006
[2026-01-10 12:37:03] 2026-01-10 17:36:00,406 | INFO     | sum of square deviations: 5081276667.5
[2026-01-10 12:37:03] 2026-01-10 17:36:00,408 | INFO     | sum of deviations: 53486457644.5
[2026-01-10 12:37:03] 2026-01-10 17:36:00,408 | INFO     | mean x: 1768058493.5
[2026-01-10 12:37:03] 2026-01-10 17:36:00,408 | INFO     | mean y: 2481944.8622047245
[2026-01-10 12:37:03] 2026-01-10 17:36:00,408 | INFO     | intersect: -18608428641.92808
[2026-01-10 12:37:03] 2026-01-10 17:36:00,408 | INFO     | chi2: 1.353908269218153
[2026-01-10 12:37:03] 2026-01-10 17:36:00,409 | INFO     | current chi2=1.353908269218153 (change=0.00928709345003207 %)
[2026-01-10 12:37:03] 2026-01-10 17:36:00,409 | INFO     | right removable region: 253
[2026-01-10 12:37:03] 2026-01-10 17:36:00,409 | INFO     | sum of square deviations: 5081276667.5
[2026-01-10 12:37:03] 2026-01-10 17:36:00,411 | INFO     | sum of deviations: 16648831778.5
[2026-01-10 12:37:03] 2026-01-10 17:36:00,411 | INFO     | mean x: 1768058798.5
[2026-01-10 12:37:03] 2026-01-10 17:36:00,411 | INFO     | mean y: 2501354.55511811
[2026-01-10 12:37:03] 2026-01-10 17:36:00,411 | INFO     | intersect: -5790553312.000947
[2026-01-10 12:37:03] 2026-01-10 17:36:00,412 | INFO     | chi2: 0.08110268291402549
[2026-01-10 12:37:03] 2026-01-10 17:36:00,412 | INFO     | current chi2=0.08110268291402549 (change=94.01029207991297 %)
[2026-01-10 12:37:03] 2026-01-10 17:36:00,412 | INFO     | sum of square deviations: 4787066500.0
[2026-01-10 12:37:03] 2026-01-10 17:36:00,414 | INFO     | sum of deviations: 4936447264.999999
[2026-01-10 12:37:03] 2026-01-10 17:36:00,414 | INFO     | mean x: 1768058951.0
[2026-01-10 12:37:03] 2026-01-10 17:36:00,414 | INFO     | mean y: 2507408.1526104417
[2026-01-10 12:37:03] 2026-01-10 17:36:00,414 | INFO     | intersect: -1820723953.4803889
[2026-01-10 12:37:03] 2026-01-10 17:36:00,415 | INFO     | chi2: 0.003206028932970667
[2026-01-10 12:37:03] 2026-01-10 17:36:00,415 | INFO     | current chi2=0.003206028932970667 (change=96.04695083099867 %)
[2026-01-10 12:37:03] 2026-01-10 17:36:00,415 | INFO     | sum of square deviations: 4504437945.0
[2026-01-10 12:37:03] 2026-01-10 17:36:00,417 | INFO     | sum of deviations: 3089855020.999998
[2026-01-10 12:37:03] 2026-01-10 17:36:00,417 | INFO     | mean x: 1768059103.5
[2026-01-10 12:37:03] 2026-01-10 17:36:00,417 | INFO     | mean y: 2508401.1967213117
[2026-01-10 12:37:03] 2026-01-10 17:36:00,417 | INFO     | intersect: -1210305797.8396537
[2026-01-10 12:37:03] 2026-01-10 17:36:00,418 | INFO     | chi2: 0.001577663300298854
[2026-01-10 12:37:03] 2026-01-10 17:36:00,418 | INFO     | current chi2=0.001577663300298854 (change=50.79073416729866 %)
[2026-01-10 12:37:03] 2026-01-10 17:36:00,418 | INFO     | sum of square deviations: 4233158440.0
[2026-01-10 12:37:03] 2026-01-10 17:36:00,420 | INFO     | sum of deviations: 2199068361.000001
[2026-01-10 12:37:03] 2026-01-10 17:36:00,420 | INFO     | mean x: 1768059256.0
[2026-01-10 12:37:03] 2026-01-10 17:36:00,420 | INFO     | mean y: 2508901.046025105
[2026-01-10 12:37:03] 2026-01-10 17:36:00,420 | INFO     | intersect: -915973887.9522532
[2026-01-10 12:37:03] 2026-01-10 17:36:00,421 | INFO     | chi2: 0.001252249727778696
[2026-01-10 12:37:03] 2026-01-10 17:36:00,421 | INFO     | current chi2=0.001252249727778696 (change=20.626300457043996 %)
[2026-01-10 12:37:03] 2026-01-10 17:36:00,421 | INFO     | left removable region: 40
[2026-01-10 12:37:03] 2026-01-10 17:36:00,421 | INFO     | sum of square deviations: 2996454322.0
[2026-01-10 12:37:03] 2026-01-10 17:36:00,422 | INFO     | sum of deviations: 1390794998.0
[2026-01-10 12:37:03] 2026-01-10 17:36:00,423 | INFO     | mean x: 1768059683.0
[2026-01-10 12:37:03] 2026-01-10 17:36:00,423 | INFO     | mean y: 2509204.530516432
[2026-01-10 12:37:03] 2026-01-10 17:36:00,423 | INFO     | intersect: -818130224.286335
[2026-01-10 12:37:03] 2026-01-10 17:36:00,423 | INFO     | chi2: 0.001119398699345467
[2026-01-10 12:37:03] 2026-01-10 17:36:00,423 | INFO     | current memory leak: 0.46 B/s (using 213 data points, chi2=0.00)
[2026-01-10 12:37:03] 2026-01-10 17:36:00,424 | INFO     | could have reported an average CPU frequency of 2397 MHz (12 samples)
[2026-01-10 12:37:03] 2026-01-10 17:36:00,424 | INFO     | ..............................
[2026-01-10 12:37:03] 2026-01-10 17:36:00,424 | INFO     | . Timing measurements:
[2026-01-10 12:37:03] 2026-01-10 17:36:00,424 | INFO     | . get job = 0 s
[2026-01-10 12:37:03] 2026-01-10 17:36:00,424 | INFO     | . initial setup = 2 s
[2026-01-10 12:37:03] 2026-01-10 17:36:00,424 | INFO     | . payload setup = 5 s
[2026-01-10 12:37:03] 2026-01-10 17:36:00,424 | INFO     | . stage-in = 0 s
[2026-01-10 12:37:03] 2026-01-10 17:36:00,424 | INFO     | . payload execution = 15777 s
[2026-01-10 12:37:03] 2026-01-10 17:36:00,424 | INFO     | . stage-out = 2 s
[2026-01-10 12:37:03] 2026-01-10 17:36:00,425 | INFO     | . log creation = 0 s
[2026-01-10 12:37:03] 2026-01-10 17:36:00,425 | INFO     | ..............................
[2026-01-10 12:37:03] 2026-01-10 17:36:00,505 | INFO     | 
[2026-01-10 12:37:03] 2026-01-10 17:36:00,505 | INFO     | job summary report
[2026-01-10 12:37:03] 2026-01-10 17:36:00,506 | INFO     | --------------------------------------------------
[2026-01-10 12:37:03] 2026-01-10 17:36:00,506 | INFO     | PanDA job id: 6965382633
[2026-01-10 12:37:03] 2026-01-10 17:36:00,506 | INFO     | task id: 47898826
[2026-01-10 12:37:03] 2026-01-10 17:36:00,506 | INFO     | errors: (none)
[2026-01-10 12:37:03] 2026-01-10 17:36:00,506 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 12:37:03] 2026-01-10 17:36:00,506 | INFO     | pilot state: finished 
[2026-01-10 12:37:03] 2026-01-10 17:36:00,507 | INFO     | transexitcode: 0
[2026-01-10 12:37:03] 2026-01-10 17:36:00,507 | INFO     | exeerrorcode: 0
[2026-01-10 12:37:03] 2026-01-10 17:36:00,507 | INFO     | exeerrordiag: 
[2026-01-10 12:37:03] 2026-01-10 17:36:00,507 | INFO     | exitcode: 0
[2026-01-10 12:37:03] 2026-01-10 17:36:00,507 | INFO     | exitmsg: OK
[2026-01-10 12:37:03] 2026-01-10 17:36:00,507 | INFO     | cpuconsumptiontime: 120550 s
[2026-01-10 12:37:03] 2026-01-10 17:36:00,507 | INFO     | nevents: 400
[2026-01-10 12:37:03] 2026-01-10 17:36:00,508 | INFO     | neventsw: 0
[2026-01-10 12:37:03] 2026-01-10 17:36:00,508 | INFO     | pid: 4582
[2026-01-10 12:37:03] 2026-01-10 17:36:00,508 | INFO     | pgrp: 4582
[2026-01-10 12:37:03] 2026-01-10 17:36:00,508 | INFO     | corecount: 8
[2026-01-10 12:37:03] 2026-01-10 17:36:00,508 | INFO     | event service: False
[2026-01-10 12:37:03] 2026-01-10 17:36:00,508 | INFO     | sizes: {0: 2283918, 5: 2284180, 11: 2284236, 15786: 2315499, 15787: 2315498, 15789: 2324736, 15794: 2324874}
[2026-01-10 12:37:03] 2026-01-10 17:36:00,508 | INFO     | --------------------------------------------------
[2026-01-10 12:37:03] 2026-01-10 17:36:00,509 | INFO     | 
[2026-01-10 12:37:03] 2026-01-10 17:36:00,509 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-10 12:37:03] 2026-01-10 17:36:00,526 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,526 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,526 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,526 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,527 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,527 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,527 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,527 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,527 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,527 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,527 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,527 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,528 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,528 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,528 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,528 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,528 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,528 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 12:37:03] 2026-01-10 17:36:00,528 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,529 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 12:37:03] 2026-01-10 17:36:00,529 | INFO     | job 6965382633 has completed (purged errors)
[2026-01-10 12:37:03] 2026-01-10 17:36:00,529 | INFO     | overall cleanup function is called
[2026-01-10 12:37:03] 2026-01-10 17:36:01,536 | INFO     | --- collectZombieJob: --- 10, [4582]
[2026-01-10 12:37:03] 2026-01-10 17:36:01,536 | INFO     | zombie collector waiting for pid 4582
[2026-01-10 12:37:03] 2026-01-10 17:36:01,536 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 12:37:03] 2026-01-10 17:36:01,536 | INFO     | collected zombie processes
[2026-01-10 12:37:03] 2026-01-10 17:36:01,536 | INFO     | will attempt to kill all subprocesses of pid=4582
[2026-01-10 12:37:03] 2026-01-10 17:36:01,640 | INFO     | process IDs to be killed: [4582] (in reverse order)
[2026-01-10 12:37:03] 2026-01-10 17:36:01,690 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 12:37:03] 2026-01-10 17:36:01,690 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 12:37:03] 2026-01-10 17:36:01,694 | INFO     | did not find any defunct processes belonging to 4582
[2026-01-10 12:37:03] 2026-01-10 17:36:01,696 | INFO     | did not find any defunct processes belonging to 4582
[2026-01-10 12:37:03] 2026-01-10 17:36:01,696 | INFO     | ready for new job
[2026-01-10 12:37:03] 2026-01-10 17:36:01,696 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 12:37:03] 2026-01-10 17:36:01,698 | INFO     | ***************************************
[2026-01-10 12:37:03] 2026-01-10 17:36:01,698 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 12:37:03] 2026-01-10 17:36:01,698 | INFO     | ***************************************
[2026-01-10 12:37:03] 2026-01-10 17:36:01,698 | INFO     | 
[2026-01-10 12:37:03] 2026-01-10 17:36:01,699 | INFO     | architecture information:
[2026-01-10 12:37:03] 2026-01-10 17:36:01,700 | INFO     | executing command: cat /etc/os-release
[2026-01-10 12:37:03] 2026-01-10 17:36:01,714 | INFO     | cat /etc/os-release:
[2026-01-10 12:37:03] NAME="CentOS Linux"
[2026-01-10 12:37:03] VERSION="7 (Core)"
[2026-01-10 12:37:03] ID="centos"
[2026-01-10 12:37:03] ID_LIKE="rhel fedora"
[2026-01-10 12:37:03] VERSION_ID="7"
[2026-01-10 12:37:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 12:37:03] ANSI_COLOR="0;31"
[2026-01-10 12:37:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 12:37:03] HOME_URL="https://www.centos.org/"
[2026-01-10 12:37:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 12:37:03] 
[2026-01-10 12:37:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 12:37:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 12:37:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 12:37:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 12:37:03] 
[2026-01-10 12:37:03] 2026-01-10 17:36:01,714 | INFO     | ***************************************
[2026-01-10 12:37:03] 2026-01-10 17:36:02,217 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-10 12:37:03] 2026-01-10 17:36:02,232 | INFO     | sufficient remaining disk space (28449964032 B)
[2026-01-10 12:37:03] 2026-01-10 17:36:02,232 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 12:37:03] 2026-01-10 17:36:02,232 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 12:37:03] 2026-01-10 17:36:02,232 | INFO     | update_server=False
[2026-01-10 12:37:03] 2026-01-10 17:36:02,232 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 12:37:03] 2026-01-10 17:36:02,232 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:37:03] 2026-01-10 17:36:02,233 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 12:37:03] 2026-01-10 17:36:02,371 | INFO     | all job control threads have been joined
[2026-01-10 12:37:03] 2026-01-10 17:36:02,393 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 12:37:03] 2026-01-10 17:36:02,424 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 12:37:03] 2026-01-10 17:36:02,425 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 12:37:03] 2026-01-10 17:36:02,426 | INFO     | all data control threads have been joined
[2026-01-10 12:37:03] 2026-01-10 17:36:02,432 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:37:03] 2026-01-10 17:36:02,432 | INFO     | will abort loop
[2026-01-10 12:37:03] 2026-01-10 17:36:03,238 | INFO     | [job] retrieve thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:03,238 | INFO     | [job] queue monitor thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:03,317 | INFO     | [data] copytool_in thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:03,343 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:03,377 | INFO     | [job] control thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:03,383 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:03,410 | INFO     | [job] validate thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:03,417 | INFO     | all payload control threads have been joined
[2026-01-10 12:37:03] 2026-01-10 17:36:03,437 | INFO     | [data] control thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:03,438 | INFO     | [job] job monitor thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:03,456 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:03,982 | INFO     | [payload] failed_post thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:04,193 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:04,238 | INFO     | [data] copytool_out thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:04,423 | INFO     | [payload] control thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:04,508 | INFO     | [payload] validate_post thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:06,399 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 12:37:03] 2026-01-10 17:36:32,332 | INFO     | PID=9023 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 12:37:03] 2026-01-10 17:36:32,332 | INFO     | .. there are 2 such processes running
[2026-01-10 12:37:03] 2026-01-10 17:36:32,333 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 12:37:03] 2026-01-10 17:36:32,333 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 12:37:03] 2026-01-10 17:36:32,333 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 12:37:03] 2026-01-10 17:36:57,195 | INFO     | [monitor] cgroup control has ended
[2026-01-10 12:37:03] 2026-01-10 17:36:58,037 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140228655830848)>', '<ExcThread(monitor, started 140227981072128)>']
[2026-01-10 12:37:03] 2026-01-10 17:36:58,442 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 12:37:03] 2026-01-10 17:36:58,442 | INFO     | [monitor] control thread has ended
[2026-01-10 12:37:03] 2026-01-10 17:37:03,063 | INFO     | all workflow threads have been joined
[2026-01-10 12:37:03] 2026-01-10 17:37:03,063 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 12:37:03] 2026-01-10 17:37:03,063 | INFO     | traces error code: 0
[2026-01-10 12:37:03] 2026-01-10 17:37:03,064 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 12:37:03] 2026-01-10 17:37:03,151 [wrapper] ==== pilot stdout END ====
[2026-01-10 12:37:03] 2026-01-10 17:37:03,155 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 12:37:03] 2026-01-10 17:37:03,159 [wrapper] pilotpid: 9023
[2026-01-10 12:37:03] 2026-01-10 17:37:03,162 [wrapper] Pilot exit status: 0
[2026-01-10 12:37:03] 2026-01-10 17:37:03,174 [wrapper] pandaids: 6965382633
[2026-01-10 12:37:03] 2026-01-10 17:37:03,213 [wrapper] cleanup supervisor_pilot  7866 9024
[2026-01-10 12:37:03] 2026-01-10 17:37:03,216 [wrapper] Test setup, not cleaning
[2026-01-10 12:37:03] 2026-01-10 17:37:03,220 [wrapper] apfmon messages muted
[2026-01-10 12:37:03] 2026-01-10 17:37:03,223 [wrapper] ==== wrapper stdout END ====
[2026-01-10 12:37:03] 2026-01-10 17:37:03,226 [wrapper] ==== wrapper stderr END ====
[2026-01-10 12:37:03]  *** Error codes and diagnostics ***
[2026-01-10 12:37:03]     "exeErrorCode": 0,
[2026-01-10 12:37:03]     "exeErrorDiag": "",
[2026-01-10 12:37:03]     "pilotErrorCode": 0,
[2026-01-10 12:37:03]     "pilotErrorDiag": "",
[2026-01-10 12:37:03]  *** Listing of results directory ***
[2026-01-10 12:37:03] total 449776
[2026-01-10 12:37:03] -rw-r--r-- 1 boincer umatlas      5112 Jan 10 08:09 queuedata.json
[2026-01-10 12:37:03] -rw-r--r-- 1 boincer umatlas    579449 Jan 10 08:09 pilot3.tar.gz
[2026-01-10 12:37:03] -rwx------ 1 boincer umatlas     36322 Jan 10 08:10 runpilot2-wrapper.sh
[2026-01-10 12:37:03] -rw-r--r-- 1 boincer umatlas       100 Jan 10 08:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 12:37:03] -rwxr-xr-x 1 boincer umatlas      7986 Jan 10 08:12 run_atlas
[2026-01-10 12:37:03] -rw-r--r-- 1 boincer umatlas       105 Jan 10 08:12 job.xml
[2026-01-10 12:37:03] -rw-r--r-- 2 boincer umatlas 226642307 Jan 10 08:12 EVNT.47898824._000915.pool.root.1
[2026-01-10 12:37:03] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 08:12 start_atlas.sh
[2026-01-10 12:37:03] drwxrwx--x 2 boincer umatlas      4096 Jan 10 08:12 shared
[2026-01-10 12:37:03] -rw-r--r-- 2 boincer umatlas    592406 Jan 10 08:12 input.tar.gz
[2026-01-10 12:37:03] -rw-r--r-- 1 boincer umatlas         0 Jan 10 08:12 boinc_lockfile
[2026-01-10 12:37:03] -rw-r--r-- 1 boincer umatlas      2518 Jan 10 08:12 pandaJob.out
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas        57 Jan 10 08:12 setup.sh.local
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas    989556 Jan 10 08:12 agis_schedconf.cvmfs.json
[2026-01-10 12:37:03] drwx------ 5 boincer umatlas      4096 Jan 10 08:12 pilot3
[2026-01-10 12:37:03] -rw-r--r-- 1 boincer umatlas      5951 Jan 10 12:31 init_data.xml
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas 224661820 Jan 10 12:35 HITS.47898826._040209.pool.root.1
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas      1050 Jan 10 12:35 memory_monitor_summary.json
[2026-01-10 12:37:03] -rw-r--r-- 1 boincer umatlas       532 Jan 10 12:35 boinc_task_state.xml
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas   1516240 Jan 10 12:35 agis_ddmendpoints.agis.ALL.json
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas    480939 Jan 10 12:35 log.47898826._040209.job.log.tgz.1
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas      7853 Jan 10 12:36 heartbeat.json
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas        95 Jan 10 12:36 pilot_heartbeat.json
[2026-01-10 12:37:03] -rw-r--r-- 1 boincer umatlas      8192 Jan 10 12:37 boinc_mmap_file
[2026-01-10 12:37:03] -rw-r--r-- 1 boincer umatlas        29 Jan 10 12:37 wrapper_checkpoint.txt
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas      5006 Jan 10 12:37 pilotlog.txt
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas   2192868 Jan 10 12:37 log.47898826._040209.job.log.1
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas       357 Jan 10 12:37 output.list
[2026-01-10 12:37:03] -rw-r--r-- 1 boincer umatlas       620 Jan 10 12:37 runtime_log
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas   2693120 Jan 10 12:37 result.tar.gz
[2026-01-10 12:37:03] -rw-r--r-- 1 boincer umatlas      9338 Jan 10 12:37 runtime_log.err
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas       661 Jan 10 12:37 pBxMDmTuny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjjmKDmSoBdWn.diag
[2026-01-10 12:37:03] -rw-r--r-- 1 boincer umatlas     20900 Jan 10 12:37 stderr.txt
[2026-01-10 12:37:03] HITS file was successfully produced:
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas 224661820 Jan 10 12:35 shared/HITS.pool.root.1
[2026-01-10 12:37:03]  *** Contents of shared directory: ***
[2026-01-10 12:37:03] total 443964
[2026-01-10 12:37:03] -rw-r--r-- 2 boincer umatlas 226642307 Jan 10 08:12 ATLAS.root_0
[2026-01-10 12:37:03] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 08:12 start_atlas.sh
[2026-01-10 12:37:03] -rw-r--r-- 2 boincer umatlas    592406 Jan 10 08:12 input.tar.gz
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas 224661820 Jan 10 12:35 HITS.pool.root.1
[2026-01-10 12:37:03] -rw------- 1 boincer umatlas   2693120 Jan 10 12:37 result.tar.gz
12:37:04 (32642): run_atlas exited; CPU time 120782.390503
12:37:04 (32642): called boinc_finish(0)

</stderr_txt>
]]>

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