Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:05:19 (2096038): wrapper (7.7.26015): starting
15:05:19 (2096038): wrapper: running run_atlas (--nthreads 12)
[2026-01-11 15:05:19] Arguments: --nthreads 12
[2026-01-11 15:05:19] Threads: 12
[2026-01-11 15:05:19] Checking for CVMFS
[2026-01-11 15:05:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 15:05:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 15:05:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 15:05:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 15:05:19] 2.13.3.0 36987 5850 103560 155018 2 188 35823236 46080001 922 130560 0 9418739 99.995 216924 24591 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-01-11 15:05:19] CVMFS is ok
[2026-01-11 15:05:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 15:05:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 15:05:19] Further information can be found at the LHC@home message board.
[2026-01-11 15:05:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 15:05:19] Checking for apptainer binary...
[2026-01-11 15:05:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 15:05:19] Running /usr/bin/apptainer --version
[2026-01-11 15:05:19] apptainer version 1.4.5-2.el9
[2026-01-11 15:05:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 15:05:19] minis01.farm.particle.cz
[2026-01-11 15:05:19] apptainer works
[2026-01-11 15:05:19] Set ATHENA_PROC_NUMBER=12
[2026-01-11 15:05:19] Set ATHENA_CORE_NUMBER=12
[2026-01-11 15:05:19] Starting ATLAS job with PandaID=6965382576
[2026-01-11 15:05:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 16:20:53]  *** The last 200 lines of the pilot log: ***
[2026-01-11 16:20:53] 2026-01-11 15:20:15,616 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6965382576/log.47898826._040152.job.log.tgz.1 /var/lib/boinc/slots/3/log.47898826._040152.job
[2026-01-11 16:20:53] 2026-01-11 15:20:15,634 | INFO     | adding to output.list: log.47898826._040152.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/08/03/log.47898826._040152.job.log.tg
[2026-01-11 16:20:53] 2026-01-11 15:20:15,634 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 16:20:53] 2026-01-11 15:20:15,635 | INFO     | summary of transferred files:
[2026-01-11 16:20:53] 2026-01-11 15:20:15,635 | INFO     |  -- lfn=log.47898826._040152.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 16:20:53] 2026-01-11 15:20:15,635 | INFO     | stage-out finished correctly
[2026-01-11 16:20:53] 2026-01-11 15:20:16,155 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 16:20:53] 2026-01-11 15:20:16,270 | INFO     | time since job start (4488s) is within the limit (349056.0s)
[2026-01-11 16:20:53] 2026-01-11 15:20:17,889 | INFO     | job 6965382576 has state=finished
[2026-01-11 16:20:53] 2026-01-11 15:20:17,889 | INFO     | preparing for final server update for job 6965382576 in state='finished'
[2026-01-11 16:20:53] 2026-01-11 15:20:17,889 | INFO     | this job has now completed (state=finished)
[2026-01-11 16:20:53] 2026-01-11 15:20:17,890 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 16:20:53] 2026-01-11 15:20:17,890 | INFO     | log transfer has been attempted: DONE
[2026-01-11 16:20:53] 2026-01-11 15:20:17,890 | INFO     | job 6965382576 has finished - writing final server update
[2026-01-11 16:20:53] 2026-01-11 15:20:17,890 | INFO     | total number of processed events: 400 (read)
[2026-01-11 16:20:53] 2026-01-11 15:20:17,891 | INFO     | executing command: lscpu
[2026-01-11 16:20:53] 2026-01-11 15:20:17,922 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 16:20:53] 2026-01-11 15:20:18,276 | INFO     | time since job start (4490s) is within the limit (349056.0s)
[2026-01-11 16:20:53] 2026-01-11 15:20:19,927 | WARNING  | process 2107402 can no longer be monitored (due to stat problems) - aborting
[2026-01-11 16:20:53] 2026-01-11 15:20:19,927 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6965382576/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 16:20:53] 2026-01-11 15:20:19,928 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6965382576/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 16:20:53] 2026-01-11 15:20:19,928 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-11 16:20:53] 2026-01-11 15:20:19,928 | WARNING  | maxPSS not found in memory monitor output
[2026-01-11 16:20:53] 2026-01-11 15:20:19,929 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4677135 B
[2026-01-11 16:20:53] 2026-01-11 15:20:19,929 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15590 B
[2026-01-11 16:20:53] 2026-01-11 15:20:19,929 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-01-11 16:20:53] 2026-01-11 15:20:20,281 | INFO     | time since job start (4492s) is within the limit (349056.0s)
[2026-01-11 16:20:53] 2026-01-11 15:20:21,575 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 16:20:53] 2026-01-11 15:20:21,586 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 2717.3315625000005
[2026-01-11 16:20:53] 2026-01-11 15:20:21,589 | INFO     | sufficient remaining disk space (71281147904 B)
[2026-01-11 16:20:53] 2026-01-11 15:20:21,590 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-11 16:20:53] 2026-01-11 15:20:21,592 | INFO     | size of work directory /var/lib/boinc/slots/3/PanDA_Pilot-6965382576: 4971815 B (within 4404019200 B limit)
[2026-01-11 16:20:53] 2026-01-11 15:20:21,592 | INFO     | pfn file=/var/lib/boinc/slots/3/PanDA_Pilot-6965382576/HITS.47898826._040152.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-11 16:20:53] 2026-01-11 15:20:21,592 | INFO     | total size of present files: 0 B (workdir size: 4971815 B)
[2026-01-11 16:20:53] 2026-01-11 15:20:21,593 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/3/PanDA_Pilot-6965382576/HITS.47898826._040152.pool.root.1 since it does not exist
[2026-01-11 16:20:53] 2026-01-11 15:20:21,594 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6965382576/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 16:20:53] 2026-01-11 15:20:21,595 | INFO     | extracted standard info from prmon json
[2026-01-11 16:20:53] 2026-01-11 15:20:21,596 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 16:20:53] 2026-01-11 15:20:21,596 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 16:20:53] 2026-01-11 15:20:21,597 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 16:20:53] 2026-01-11 15:20:21,597 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 16:20:53] 2026-01-11 15:20:21,599 | INFO     | fitting pss+swap vs Time
[2026-01-11 16:20:53] 2026-01-11 15:20:21,599 | INFO     | sum of square deviations: 93240818.0
[2026-01-11 16:20:53] 2026-01-11 15:20:21,600 | INFO     | sum of deviations: -138499036.00000042
[2026-01-11 16:20:53] 2026-01-11 15:20:21,600 | INFO     | mean x: 1768142671.0
[2026-01-11 16:20:53] 2026-01-11 15:20:21,600 | INFO     | mean y: 2718894.9104477614
[2026-01-11 16:20:53] 2026-01-11 15:20:21,601 | INFO     | intersect: 2629101424.54426
[2026-01-11 16:20:53] 2026-01-11 15:20:21,601 | INFO     | chi2: 0.012711839354441822
[2026-01-11 16:20:53] 2026-01-11 15:20:21,601 | INFO     | current memory leak: -1.49 B/s (using 67 data points, chi2=0.01)
[2026-01-11 16:20:53] 2026-01-11 15:20:21,602 | INFO     | could have reported an average CPU frequency of 2791 MHz (6 samples)
[2026-01-11 16:20:53] 2026-01-11 15:20:21,602 | INFO     | ..............................
[2026-01-11 16:20:53] 2026-01-11 15:20:21,602 | INFO     | . Timing measurements:
[2026-01-11 16:20:53] 2026-01-11 15:20:21,602 | INFO     | . get job = 0 s
[2026-01-11 16:20:53] 2026-01-11 15:20:21,602 | INFO     | . initial setup = 1 s
[2026-01-11 16:20:53] 2026-01-11 15:20:21,603 | INFO     | . payload setup = 4 s
[2026-01-11 16:20:53] 2026-01-11 15:20:21,603 | INFO     | . stage-in = 0 s
[2026-01-11 16:20:53] 2026-01-11 15:20:21,603 | INFO     | . payload execution = 4463 s
[2026-01-11 16:20:53] 2026-01-11 15:20:21,603 | INFO     | . stage-out = 0 s
[2026-01-11 16:20:53] 2026-01-11 15:20:21,603 | INFO     | . log creation = 0 s
[2026-01-11 16:20:53] 2026-01-11 15:20:21,603 | INFO     | ..............................
[2026-01-11 16:20:53] 2026-01-11 15:20:21,818 | INFO     | number of running child processes to parent process 2107402: 1
[2026-01-11 16:20:53] 2026-01-11 15:20:21,818 | INFO     | maximum number of monitored processes: 6
[2026-01-11 16:20:53] 2026-01-11 15:20:21,818 | INFO     | aborting job monitoring since job object (job id=6965382576) has expired
[2026-01-11 16:20:53] 2026-01-11 15:20:21,966 | INFO     | 
[2026-01-11 16:20:53] 2026-01-11 15:20:21,967 | INFO     | job summary report
[2026-01-11 16:20:53] 2026-01-11 15:20:21,967 | INFO     | --------------------------------------------------
[2026-01-11 16:20:53] 2026-01-11 15:20:21,967 | INFO     | PanDA job id: 6965382576
[2026-01-11 16:20:53] 2026-01-11 15:20:21,967 | INFO     | task id: 47898826
[2026-01-11 16:20:53] 2026-01-11 15:20:21,967 | INFO     | errors: (none)
[2026-01-11 16:20:53] 2026-01-11 15:20:21,967 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 16:20:53] 2026-01-11 15:20:21,967 | INFO     | pilot state: finished 
[2026-01-11 16:20:53] 2026-01-11 15:20:21,967 | INFO     | transexitcode: 0
[2026-01-11 16:20:53] 2026-01-11 15:20:21,968 | INFO     | exeerrorcode: 0
[2026-01-11 16:20:53] 2026-01-11 15:20:21,968 | INFO     | exeerrordiag: 
[2026-01-11 16:20:53] 2026-01-11 15:20:21,968 | INFO     | exitcode: 0
[2026-01-11 16:20:53] 2026-01-11 15:20:21,968 | INFO     | exitmsg: OK
[2026-01-11 16:20:53] 2026-01-11 15:20:21,968 | INFO     | cpuconsumptiontime: 48681 s
[2026-01-11 16:20:53] 2026-01-11 15:20:21,968 | INFO     | nevents: 400
[2026-01-11 16:20:53] 2026-01-11 15:20:21,968 | INFO     | neventsw: 0
[2026-01-11 16:20:53] 2026-01-11 15:20:21,968 | INFO     | pid: 2107402
[2026-01-11 16:20:53] 2026-01-11 15:20:21,968 | INFO     | pgrp: 2107402
[2026-01-11 16:20:53] 2026-01-11 15:20:21,969 | INFO     | corecount: 12
[2026-01-11 16:20:53] 2026-01-11 15:20:21,969 | INFO     | event service: False
[2026-01-11 16:20:53] 2026-01-11 15:20:21,969 | INFO     | sizes: {0: 2283743, 1: 2283942, 4: 2284204, 11: 2284232, 4471: 2310445, 4472: 2319443, 4473: 2319627, 4478: 2319849}
[2026-01-11 16:20:53] 2026-01-11 15:20:21,969 | INFO     | --------------------------------------------------
[2026-01-11 16:20:53] 2026-01-11 15:20:21,969 | INFO     | 
[2026-01-11 16:20:53] 2026-01-11 15:20:21,969 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2026-01-11 16:20:53] 2026-01-11 15:20:21,987 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,988 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,988 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,988 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,988 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,988 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,988 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,988 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,988 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,989 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,989 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,989 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,989 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,989 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,989 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,989 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,989 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,989 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 16:20:53] 2026-01-11 15:20:21,990 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,990 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 16:20:53] 2026-01-11 15:20:21,990 | INFO     | job 6965382576 has completed (purged errors)
[2026-01-11 16:20:53] 2026-01-11 15:20:21,990 | INFO     | overall cleanup function is called
[2026-01-11 16:20:53] 2026-01-11 15:20:22,999 | INFO     | --- collectZombieJob: --- 10, [2107402]
[2026-01-11 16:20:53] 2026-01-11 15:20:23,000 | INFO     | zombie collector waiting for pid 2107402
[2026-01-11 16:20:53] 2026-01-11 15:20:23,000 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 16:20:53] 2026-01-11 15:20:23,000 | INFO     | collected zombie processes
[2026-01-11 16:20:53] 2026-01-11 15:20:23,000 | INFO     | will attempt to kill all subprocesses of pid=2107402
[2026-01-11 16:20:53] 2026-01-11 15:20:23,149 | INFO     | process IDs to be killed: [2107402] (in reverse order)
[2026-01-11 16:20:53] 2026-01-11 15:20:23,200 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 16:20:53] 2026-01-11 15:20:23,200 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 16:20:53] 2026-01-11 15:20:23,207 | INFO     | did not find any defunct processes belonging to 2107402
[2026-01-11 16:20:53] 2026-01-11 15:20:23,212 | INFO     | did not find any defunct processes belonging to 2107402
[2026-01-11 16:20:53] 2026-01-11 15:20:23,213 | INFO     | ready for new job
[2026-01-11 16:20:53] 2026-01-11 15:20:23,213 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 16:20:53] 2026-01-11 15:20:23,214 | INFO     | ***************************************
[2026-01-11 16:20:53] 2026-01-11 15:20:23,214 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 16:20:53] 2026-01-11 15:20:23,214 | INFO     | ***************************************
[2026-01-11 16:20:53] 2026-01-11 15:20:23,214 | INFO     | 
[2026-01-11 16:20:53] 2026-01-11 15:20:23,216 | INFO     | architecture information:
[2026-01-11 16:20:53] 2026-01-11 15:20:23,216 | INFO     | executing command: cat /etc/os-release
[2026-01-11 16:20:53] 2026-01-11 15:20:23,228 | INFO     | cat /etc/os-release:
[2026-01-11 16:20:53] NAME="CentOS Linux"
[2026-01-11 16:20:53] VERSION="7 (Core)"
[2026-01-11 16:20:53] ID="centos"
[2026-01-11 16:20:53] ID_LIKE="rhel fedora"
[2026-01-11 16:20:53] VERSION_ID="7"
[2026-01-11 16:20:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 16:20:53] ANSI_COLOR="0;31"
[2026-01-11 16:20:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 16:20:53] HOME_URL="https://www.centos.org/"
[2026-01-11 16:20:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 16:20:53] 
[2026-01-11 16:20:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 16:20:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 16:20:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 16:20:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 16:20:53] 
[2026-01-11 16:20:53] 2026-01-11 15:20:23,228 | INFO     | ***************************************
[2026-01-11 16:20:53] 2026-01-11 15:20:23,731 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-01-11 16:20:53] 2026-01-11 15:20:23,747 | INFO     | sufficient remaining disk space (71286390784 B)
[2026-01-11 16:20:53] 2026-01-11 15:20:23,747 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 16:20:53] 2026-01-11 15:20:23,747 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 16:20:53] 2026-01-11 15:20:23,748 | INFO     | update_server=False
[2026-01-11 16:20:53] 2026-01-11 15:20:23,748 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 16:20:53] 2026-01-11 15:20:23,748 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 16:20:53] 2026-01-11 15:20:23,748 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 16:20:53] 2026-01-11 15:20:23,748 | INFO     | aborting loop
[2026-01-11 16:20:53] 2026-01-11 15:20:23,810 | INFO     | all data control threads have been joined
[2026-01-11 16:20:53] 2026-01-11 15:20:24,412 | INFO     | all job control threads have been joined
[2026-01-11 16:20:53] 2026-01-11 15:20:24,753 | INFO     | [job] job monitor thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:24,753 | INFO     | [job] retrieve thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:24,786 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:24,806 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:24,811 | INFO     | all payload control threads have been joined
[2026-01-11 16:20:53] 2026-01-11 15:20:24,815 | INFO     | [data] control thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:24,901 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:24,903 | INFO     | [payload] failed_post thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:25,417 | INFO     | [job] control thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:25,466 | INFO     | [payload] validate_post thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:25,646 | INFO     | [data] copytool_in thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:25,754 | INFO     | [data] copytool_out thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:25,812 | INFO     | [payload] control thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:26,007 | INFO     | [job] validate thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:26,690 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 16:20:53] 2026-01-11 15:20:26,734 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 16:20:53] 2026-01-11 15:20:26,776 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-01-11 16:20:53] 2026-01-11 15:20:27,695 | INFO     | [job] queue monitor thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:30,740 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:33,853 | INFO     | job.realtimelogging is not enabled
[2026-01-11 16:20:53] 2026-01-11 15:20:34,157 | INFO     | [monitor] cgroup control has ended
[2026-01-11 16:20:53] 2026-01-11 15:20:34,858 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 16:20:53] 2026-01-11 15:20:35,465 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140039935072064)>', '<ExcThread(monitor, started 140039489058560)>']
[2026-01-11 16:20:53] 2026-01-11 15:20:40,491 | INFO     | all workflow threads have been joined
[2026-01-11 16:20:53] 2026-01-11 15:20:40,491 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 16:20:53] 2026-01-11 15:20:40,492 | INFO     | traces error code: 0
[2026-01-11 16:20:53] 2026-01-11 15:20:40,492 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 16:20:53] 2026-01-11 15:20:53,562 | INFO     | PID=2099930 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 16:20:53] 2026-01-11 15:20:53,562 | INFO     | .. there are 2 such processes running
[2026-01-11 16:20:53] 2026-01-11 15:20:53,563 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 16:20:53] 2026-01-11 15:20:53,563 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 16:20:53] 2026-01-11 15:20:53,563 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 16:20:53] 2026-01-11 15:20:53,563 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 16:20:53] 2026-01-11 15:20:53,563 | INFO     | [monitor] control thread has ended
[2026-01-11 16:20:53] 2026-01-11 15:20:53,662 [wrapper] ==== pilot stdout END ====
[2026-01-11 16:20:53] 2026-01-11 15:20:53,664 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 16:20:53] 2026-01-11 15:20:53,667 [wrapper] pilotpid: 2099930
[2026-01-11 16:20:53] 2026-01-11 15:20:53,669 [wrapper] Pilot exit status: 0
[2026-01-11 16:20:53] 2026-01-11 15:20:53,680 [wrapper] pandaids: 6965382576
[2026-01-11 16:20:53] 2026-01-11 15:20:53,722 [wrapper] cleanup supervisor_pilot 2180149 2099931
[2026-01-11 16:20:53] 2026-01-11 15:20:53,725 [wrapper] Test setup, not cleaning
[2026-01-11 16:20:53] 2026-01-11 15:20:53,728 [wrapper] apfmon messages muted
[2026-01-11 16:20:53] 2026-01-11 15:20:53,730 [wrapper] ==== wrapper stdout END ====
[2026-01-11 16:20:53] 2026-01-11 15:20:53,733 [wrapper] ==== wrapper stderr END ====
[2026-01-11 16:20:53]  *** Error codes and diagnostics ***
[2026-01-11 16:20:53]     "exeErrorCode": 0,
[2026-01-11 16:20:53]     "exeErrorDiag": "",
[2026-01-11 16:20:53]     "pilotErrorCode": 0,
[2026-01-11 16:20:53]     "pilotErrorDiag": "",
[2026-01-11 16:20:53]  *** Listing of results directory ***
[2026-01-11 16:20:53] total 438680
[2026-01-11 16:20:53] -rw-r--r--. 1 boinc boinc      5112 Jan 10 14:09 queuedata.json
[2026-01-11 16:20:53] -rw-r--r--. 1 boinc boinc    579449 Jan 10 14:09 pilot3.tar.gz
[2026-01-11 16:20:53] -rwx------. 1 boinc boinc     36322 Jan 10 14:10 runpilot2-wrapper.sh
[2026-01-11 16:20:53] -rw-r--r--. 1 boinc boinc       100 Jan 11 15:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 16:20:53] -rwxr-xr-x. 1 boinc boinc      7986 Jan 11 15:05 run_atlas
[2026-01-11 16:20:53] -rw-r--r--. 1 boinc boinc       105 Jan 11 15:05 job.xml
[2026-01-11 16:20:53] -rw-r--r--. 1 boinc boinc      6523 Jan 11 15:05 init_data.xml
[2026-01-11 16:20:53] -rw-r--r--. 2 boinc boinc 226104952 Jan 11 15:05 EVNT.47898824._000484.pool.root.1
[2026-01-11 16:20:53] -rw-r--r--. 2 boinc boinc    592406 Jan 11 15:05 input.tar.gz
[2026-01-11 16:20:53] -rw-r--r--. 2 boinc boinc     15847 Jan 11 15:05 start_atlas.sh
[2026-01-11 16:20:53] drwxrwx--x. 2 boinc boinc      4096 Jan 11 15:05 shared
[2026-01-11 16:20:53] -rw-r--r--. 1 boinc boinc         0 Jan 11 15:05 boinc_lockfile
[2026-01-11 16:20:53] -rw-r--r--. 1 boinc boinc      2516 Jan 11 15:05 pandaJob.out
[2026-01-11 16:20:53] -rw-------. 1 boinc boinc    989556 Jan 11 15:05 agis_schedconf.cvmfs.json
[2026-01-11 16:20:53] -rw-------. 1 boinc boinc   1516240 Jan 11 15:05 agis_ddmendpoints.agis.ALL.json
[2026-01-11 16:20:53] drwx------. 5 boinc boinc      4096 Jan 11 15:05 pilot3
[2026-01-11 16:20:53] -rw-------. 1 boinc boinc 217064637 Jan 11 16:19 HITS.47898826._040152.pool.root.1
[2026-01-11 16:20:53] -rw-r--r--. 1 boinc boinc       529 Jan 11 16:19 boinc_task_state.xml
[2026-01-11 16:20:53] -rw-------. 1 boinc boinc      1012 Jan 11 16:20 memory_monitor_summary.json
[2026-01-11 16:20:53] -rw-------. 1 boinc boinc    396680 Jan 11 16:20 log.47898826._040152.job.log.tgz.1
[2026-01-11 16:20:53] -rw-------. 1 boinc boinc      7761 Jan 11 16:20 heartbeat.json
[2026-01-11 16:20:53] -rw-r--r--. 1 boinc boinc        27 Jan 11 16:20 wrapper_checkpoint.txt
[2026-01-11 16:20:53] -rw-r--r--. 1 boinc boinc      8192 Jan 11 16:20 boinc_mmap_file
[2026-01-11 16:20:53] -rw-------. 1 boinc boinc        95 Jan 11 16:20 pilot_heartbeat.json
[2026-01-11 16:20:53] -rw-------. 1 boinc boinc       822 Jan 11 16:20 pilotlog.txt
[2026-01-11 16:20:53] -rw-------. 1 boinc boinc    670281 Jan 11 16:20 log.47898826._040152.job.log.1
[2026-01-11 16:20:53] -rw-------. 1 boinc boinc       357 Jan 11 16:20 output.list
[2026-01-11 16:20:53] -rw-r--r--. 1 boinc boinc       620 Jan 11 16:20 runtime_log
[2026-01-11 16:20:53] -rw-------. 1 boinc boinc   1085440 Jan 11 16:20 result.tar.gz
[2026-01-11 16:20:53] -rw-r--r--. 1 boinc boinc      8864 Jan 11 16:20 runtime_log.err
[2026-01-11 16:20:53] -rw-------. 1 boinc boinc       663 Jan 11 16:20 4wzLDmTuny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrimKDmZ5VWfn.diag
[2026-01-11 16:20:53] -rw-r--r--. 1 boinc boinc     22683 Jan 11 16:20 stderr.txt
[2026-01-11 16:20:53] HITS file was successfully produced:
[2026-01-11 16:20:53] -rw-------. 1 boinc boinc 217064637 Jan 11 16:19 shared/HITS.pool.root.1
[2026-01-11 16:20:53]  *** Contents of shared directory: ***
[2026-01-11 16:20:53] total 434448
[2026-01-11 16:20:53] -rw-r--r--. 2 boinc boinc 226104952 Jan 11 15:05 ATLAS.root_0
[2026-01-11 16:20:53] -rw-r--r--. 2 boinc boinc    592406 Jan 11 15:05 input.tar.gz
[2026-01-11 16:20:53] -rw-r--r--. 2 boinc boinc     15847 Jan 11 15:05 start_atlas.sh
[2026-01-11 16:20:53] -rw-------. 1 boinc boinc 217064637 Jan 11 16:19 HITS.pool.root.1
[2026-01-11 16:20:53] -rw-------. 1 boinc boinc   1085440 Jan 11 16:20 result.tar.gz
16:20:55 (2096038): run_atlas exited; CPU time 48735.068869
16:20:55 (2096038): called boinc_finish(0)

</stderr_txt>
]]>

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