Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:20:22 (3563863): wrapper (7.7.26015): starting
09:20:22 (3563863): wrapper: running run_atlas (--nthreads 9)
[2026-01-10 09:20:22] Arguments: --nthreads 9
[2026-01-10 09:20:22] Threads: 9
[2026-01-10 09:20:22] Checking for CVMFS
[2026-01-10 09:20:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 09:20:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 09:20:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 09:20:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 09:20:24] 2.13.3.0 11285 94917 164660 154982 1 34 19862762 32935936 15439 16776704 0 539834044 99.543 694083430 37226 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 09:20:24] CVMFS is ok
[2026-01-10 09:20:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 09:20:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 09:20:24] Further information can be found at the LHC@home message board.
[2026-01-10 09:20:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 09:20:24] Checking for apptainer binary...
[2026-01-10 09:20:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 09:20:24] Running /usr/bin/apptainer --version
[2026-01-10 09:20:24] apptainer version 1.4.5-2.el9
[2026-01-10 09:20:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 09:20:24] c7-3-29.aglt2.org
[2026-01-10 09:20:24] apptainer works
[2026-01-10 09:20:24] Set ATHENA_PROC_NUMBER=9
[2026-01-10 09:20:24] Set ATHENA_CORE_NUMBER=9
[2026-01-10 09:20:25] Starting ATLAS job with PandaID=6965382575
[2026-01-10 09:20:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 13:02:31]  *** The last 200 lines of the pilot log: ***
[2026-01-10 13:02:31] 2026-01-10 18:01:42,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:02:31] 2026-01-10 18:01:44,835 | INFO     | time since job start (13242s) is within the limit (349056.0s)
[2026-01-10 13:02:31] 2026-01-10 18:01:45,369 | INFO     | monitor loop #858: job 0:6965382575 is in state 'finished'
[2026-01-10 13:02:31] 2026-01-10 18:01:45,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:02:31] 2026-01-10 18:01:46,842 | INFO     | time since job start (13244s) is within the limit (349056.0s)
[2026-01-10 13:02:31] 2026-01-10 18:01:47,874 | INFO     | monitor loop #859: job 0:6965382575 is in state 'finished'
[2026-01-10 13:02:31] 2026-01-10 18:01:47,875 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:02:31] 2026-01-10 18:01:48,427 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 13:02:31] 2026-01-10 18:01:48,433 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3262.3545104166665
[2026-01-10 13:02:31] 2026-01-10 18:01:48,448 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6965382575/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 13:02:31] 2026-01-10 18:01:48,449 | INFO     | extracted standard info from prmon json
[2026-01-10 13:02:31] 2026-01-10 18:01:48,450 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 13:02:31] 2026-01-10 18:01:48,450 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 13:02:31] 2026-01-10 18:01:48,450 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 13:02:31] 2026-01-10 18:01:48,450 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 13:02:31] 2026-01-10 18:01:48,458 | INFO     | fitting pss+swap vs Time
[2026-01-10 13:02:31] 2026-01-10 18:01:48,458 | INFO     | sum of square deviations: 3124773084.8148117
[2026-01-10 13:02:31] 2026-01-10 18:01:48,459 | INFO     | sum of deviations: -30114520447.722218
[2026-01-10 13:02:31] 2026-01-10 18:01:48,460 | INFO     | mean x: 1768061495.574074
[2026-01-10 13:02:31] 2026-01-10 18:01:48,460 | INFO     | mean y: 2591841.763888889
[2026-01-10 13:02:31] 2026-01-10 18:01:48,460 | INFO     | intersect: 17042012822.456085
[2026-01-10 13:02:31] 2026-01-10 18:01:48,460 | INFO     | chi2: 3.1477243641138988
[2026-01-10 13:02:31] 2026-01-10 18:01:48,464 | INFO     | sum of square deviations: 2912755384.786747
[2026-01-10 13:02:31] 2026-01-10 18:01:48,466 | INFO     | sum of deviations: -15390380133.066355
[2026-01-10 13:02:31] 2026-01-10 18:01:48,466 | INFO     | mean x: 1768061343.0758293
[2026-01-10 13:02:31] 2026-01-10 18:01:48,466 | INFO     | mean y: 2602246.3791469196
[2026-01-10 13:02:31] 2026-01-10 18:01:48,466 | INFO     | intersect: 9344662451.86018
[2026-01-10 13:02:31] 2026-01-10 18:01:48,466 | INFO     | chi2: 2.485407690105757
[2026-01-10 13:02:31] 2026-01-10 18:01:48,466 | INFO     | current chi2=2.485407690105757 (change=21.04112677586964 %)
[2026-01-10 13:02:31] 2026-01-10 18:01:48,466 | INFO     | right removable region: 210
[2026-01-10 13:02:31] 2026-01-10 18:01:48,467 | INFO     | sum of square deviations: 2912745624.786747
[2026-01-10 13:02:31] 2026-01-10 18:01:48,468 | INFO     | sum of deviations: -75955131617.36969
[2026-01-10 13:02:31] 2026-01-10 18:01:48,468 | INFO     | mean x: 1768061648.0758293
[2026-01-10 13:02:31] 2026-01-10 18:01:48,468 | INFO     | mean y: 2624566.3981042653
[2026-01-10 13:02:31] 2026-01-10 18:01:48,472 | INFO     | intersect: 46108042782.26283
[2026-01-10 13:02:31] 2026-01-10 18:01:48,472 | INFO     | chi2: 1.0569945598496528
[2026-01-10 13:02:31] 2026-01-10 18:01:48,473 | INFO     | current chi2=1.0569945598496528 (change=66.42035840558096 %)
[2026-01-10 13:02:31] 2026-01-10 18:01:48,473 | INFO     | sum of square deviations: 2710532302.257297
[2026-01-10 13:02:31] 2026-01-10 18:01:48,474 | INFO     | sum of deviations: -76561074734.80579
[2026-01-10 13:02:31] 2026-01-10 18:01:48,474 | INFO     | mean x: 1768061800.5776699
[2026-01-10 13:02:31] 2026-01-10 18:01:48,474 | INFO     | mean y: 2624984.7378640776
[2026-01-10 13:02:31] 2026-01-10 18:01:48,474 | INFO     | intersect: 49942893741.93078
[2026-01-10 13:02:31] 2026-01-10 18:01:48,474 | INFO     | chi2: 1.024894321445586
[2026-01-10 13:02:31] 2026-01-10 18:01:48,475 | INFO     | current chi2=1.024894321445586 (change=3.0369350631883 %)
[2026-01-10 13:02:31] 2026-01-10 18:01:48,475 | INFO     | left removable region: 20
[2026-01-10 13:02:31] 2026-01-10 18:01:48,475 | INFO     | sum of square deviations: 2126715880.3157895
[2026-01-10 13:02:31] 2026-01-10 18:01:48,476 | INFO     | sum of deviations: -44020562623.52632
[2026-01-10 13:02:31] 2026-01-10 18:01:48,476 | INFO     | mean x: 1768061922.5789473
[2026-01-10 13:02:31] 2026-01-10 18:01:48,480 | INFO     | mean y: 2622228.9684210527
[2026-01-10 13:02:31] 2026-01-10 18:01:48,480 | INFO     | intersect: 36599462129.182076
[2026-01-10 13:02:31] 2026-01-10 18:01:48,481 | INFO     | chi2: 0.29991523558356964
[2026-01-10 13:02:31] 2026-01-10 18:01:48,481 | INFO     | current memory leak: -20.70 B/s (using 190 data points, chi2=0.30)
[2026-01-10 13:02:31] 2026-01-10 18:01:48,481 | INFO     | could have reported an average CPU frequency of 3230 MHz (11 samples)
[2026-01-10 13:02:31] 2026-01-10 18:01:48,482 | INFO     | ..............................
[2026-01-10 13:02:31] 2026-01-10 18:01:48,482 | INFO     | . Timing measurements:
[2026-01-10 13:02:31] 2026-01-10 18:01:48,482 | INFO     | . get job = 0 s
[2026-01-10 13:02:31] 2026-01-10 18:01:48,482 | INFO     | . initial setup = 3 s
[2026-01-10 13:02:31] 2026-01-10 18:01:48,482 | INFO     | . payload setup = 15 s
[2026-01-10 13:02:31] 2026-01-10 18:01:48,482 | INFO     | . stage-in = 0 s
[2026-01-10 13:02:31] 2026-01-10 18:01:48,482 | INFO     | . payload execution = 13157 s
[2026-01-10 13:02:31] 2026-01-10 18:01:48,482 | INFO     | . stage-out = 4 s
[2026-01-10 13:02:31] 2026-01-10 18:01:48,482 | INFO     | . log creation = 0 s
[2026-01-10 13:02:31] 2026-01-10 18:01:48,482 | INFO     | ..............................
[2026-01-10 13:02:31] 2026-01-10 18:01:48,657 | INFO     | 
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | job summary report
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | --------------------------------------------------
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | PanDA job id: 6965382575
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | task id: 47898826
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | errors: (none)
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | pilot state: finished 
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | transexitcode: 0
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | exeerrorcode: 0
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | exeerrordiag: 
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | exitcode: 0
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | exitmsg: OK
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | cpuconsumptiontime: 45933 s
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | nevents: 400
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | neventsw: 0
[2026-01-10 13:02:31] 2026-01-10 18:01:48,658 | INFO     | pid: 3587885
[2026-01-10 13:02:31] 2026-01-10 18:01:48,659 | INFO     | pgrp: 3587885
[2026-01-10 13:02:31] 2026-01-10 18:01:48,659 | INFO     | corecount: 9
[2026-01-10 13:02:31] 2026-01-10 18:01:48,659 | INFO     | event service: False
[2026-01-10 13:02:31] 2026-01-10 18:01:48,659 | INFO     | sizes: {0: 2283743, 1: 2283771, 2: 2283970, 13: 2283970, 19: 2284288, 23: 2284316, 13178: 2314581, 13183: 2323579, 13187: 2323635, 13208: 2323829}
[2026-01-10 13:02:31] 2026-01-10 18:01:48,659 | INFO     | --------------------------------------------------
[2026-01-10 13:02:31] 2026-01-10 18:01:48,659 | INFO     | 
[2026-01-10 13:02:31] 2026-01-10 18:01:48,659 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-10 13:02:31] 2026-01-10 18:01:48,850 | INFO     | time since job start (13246s) is within the limit (349056.0s)
[2026-01-10 13:02:31] 2026-01-10 18:01:48,879 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,880 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,881 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 13:02:31] 2026-01-10 18:01:48,881 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,881 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 13:02:31] 2026-01-10 18:01:48,881 | INFO     | job 6965382575 has completed (purged errors)
[2026-01-10 13:02:31] 2026-01-10 18:01:48,881 | INFO     | overall cleanup function is called
[2026-01-10 13:02:31] 2026-01-10 18:01:49,917 | INFO     | --- collectZombieJob: --- 10, [3587885]
[2026-01-10 13:02:31] 2026-01-10 18:01:49,918 | INFO     | zombie collector waiting for pid 3587885
[2026-01-10 13:02:31] 2026-01-10 18:01:49,918 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 13:02:31] 2026-01-10 18:01:49,918 | INFO     | collected zombie processes
[2026-01-10 13:02:31] 2026-01-10 18:01:49,918 | INFO     | will attempt to kill all subprocesses of pid=3587885
[2026-01-10 13:02:31] 2026-01-10 18:01:51,138 | INFO     | process IDs to be killed: [3587885] (in reverse order)
[2026-01-10 13:02:31] 2026-01-10 18:01:51,406 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 13:02:31] 2026-01-10 18:01:51,406 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 13:02:31] 2026-01-10 18:01:51,492 | INFO     | did not find any defunct processes belonging to 3587885
[2026-01-10 13:02:31] 2026-01-10 18:01:51,544 | INFO     | did not find any defunct processes belonging to 3587885
[2026-01-10 13:02:31] 2026-01-10 18:01:51,545 | INFO     | ready for new job
[2026-01-10 13:02:31] 2026-01-10 18:01:51,545 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 13:02:31] 2026-01-10 18:01:51,549 | INFO     | ***************************************
[2026-01-10 13:02:31] 2026-01-10 18:01:51,574 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 13:02:31] 2026-01-10 18:01:51,574 | INFO     | ***************************************
[2026-01-10 13:02:31] 2026-01-10 18:01:51,575 | INFO     | 
[2026-01-10 13:02:31] 2026-01-10 18:01:51,597 | INFO     | architecture information:
[2026-01-10 13:02:31] 2026-01-10 18:01:51,618 | INFO     | executing command: cat /etc/os-release
[2026-01-10 13:02:31] 2026-01-10 18:01:51,731 | INFO     | cat /etc/os-release:
[2026-01-10 13:02:31] NAME="CentOS Linux"
[2026-01-10 13:02:31] VERSION="7 (Core)"
[2026-01-10 13:02:31] ID="centos"
[2026-01-10 13:02:31] ID_LIKE="rhel fedora"
[2026-01-10 13:02:31] VERSION_ID="7"
[2026-01-10 13:02:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 13:02:31] ANSI_COLOR="0;31"
[2026-01-10 13:02:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 13:02:31] HOME_URL="https://www.centos.org/"
[2026-01-10 13:02:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 13:02:31] 
[2026-01-10 13:02:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 13:02:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 13:02:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 13:02:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 13:02:31] 
[2026-01-10 13:02:31] 2026-01-10 18:01:51,731 | INFO     | ***************************************
[2026-01-10 13:02:31] 2026-01-10 18:01:52,235 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-10 13:02:31] 2026-01-10 18:01:52,342 | INFO     | sufficient remaining disk space (75334942720 B)
[2026-01-10 13:02:31] 2026-01-10 18:01:52,342 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 13:02:31] 2026-01-10 18:01:52,342 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 13:02:31] 2026-01-10 18:01:52,342 | INFO     | update_server=False
[2026-01-10 13:02:31] 2026-01-10 18:01:52,342 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 13:02:31] 2026-01-10 18:01:52,343 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 13:02:31] 2026-01-10 18:01:52,343 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:02:31] 2026-01-10 18:01:52,343 | INFO     | aborting loop
[2026-01-10 13:02:31] 2026-01-10 18:01:52,401 | INFO     | all job control threads have been joined
[2026-01-10 13:02:31] 2026-01-10 18:01:52,475 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 13:02:31] 2026-01-10 18:01:53,010 | INFO     | all payload control threads have been joined
[2026-01-10 13:02:31] 2026-01-10 18:01:53,167 | INFO     | all data control threads have been joined
[2026-01-10 13:02:31] 2026-01-10 18:01:53,348 | INFO     | [job] retrieve thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:01:53,353 | INFO     | [job] job monitor thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:01:53,375 | INFO     | [job] validate thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:01:53,407 | INFO     | [job] control thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:01:53,619 | INFO     | [data] copytool_in thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:01:53,715 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:01:53,729 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:02:31] 2026-01-10 18:01:53,738 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:01:53,883 | INFO     | [payload] failed_post thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:01:53,977 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:01:54,016 | INFO     | [payload] control thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:01:54,174 | INFO     | [data] control thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:01:54,245 | INFO     | [payload] validate_post thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:01:54,482 | INFO     | [data] copytool_out thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:01:54,560 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:01:54,735 | INFO     | [job] queue monitor thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:01:56,351 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 13:02:31] 2026-01-10 18:02:20,953 | INFO     | 13252s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-10 13:02:31] 2026-01-10 18:02:24,137 | INFO     | PID=3572507 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 13:02:31] 2026-01-10 18:02:24,138 | INFO     | .. there are 15 such processes running
[2026-01-10 13:02:31] 2026-01-10 18:02:24,138 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 13:02:31] 2026-01-10 18:02:24,138 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 13:02:31] 2026-01-10 18:02:24,157 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 13:02:31] 2026-01-10 18:02:24,184 | INFO     | [monitor] cgroup control has ended
[2026-01-10 13:02:31] 2026-01-10 18:02:24,485 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139859120105280)>', '<ExcThread(monitor, started 139858496452352)>']
[2026-01-10 13:02:31] 2026-01-10 18:02:25,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 13:02:31] 2026-01-10 18:02:25,164 | INFO     | [monitor] control thread has ended
[2026-01-10 13:02:31] 2026-01-10 18:02:29,511 | INFO     | all workflow threads have been joined
[2026-01-10 13:02:31] 2026-01-10 18:02:29,511 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 13:02:31] 2026-01-10 18:02:29,512 | INFO     | traces error code: 0
[2026-01-10 13:02:31] 2026-01-10 18:02:29,512 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 13:02:31] 2026-01-10 18:02:30,394 [wrapper] ==== pilot stdout END ====
[2026-01-10 13:02:31] 2026-01-10 18:02:30,414 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 13:02:31] 2026-01-10 18:02:30,437 [wrapper] pilotpid: 3572507
[2026-01-10 13:02:31] 2026-01-10 18:02:30,439 [wrapper] Pilot exit status: 0
[2026-01-10 13:02:31] 2026-01-10 18:02:30,514 [wrapper] pandaids: 6965382575
[2026-01-10 13:02:31] 2026-01-10 18:02:31,031 [wrapper] cleanup supervisor_pilot 4131106 3572508
[2026-01-10 13:02:31] 2026-01-10 18:02:31,053 [wrapper] Test setup, not cleaning
[2026-01-10 13:02:31] 2026-01-10 18:02:31,078 [wrapper] apfmon messages muted
[2026-01-10 13:02:31] 2026-01-10 18:02:31,113 [wrapper] ==== wrapper stdout END ====
[2026-01-10 13:02:31] 2026-01-10 18:02:31,140 [wrapper] ==== wrapper stderr END ====
[2026-01-10 13:02:31]  *** Error codes and diagnostics ***
[2026-01-10 13:02:31]     "exeErrorCode": 0,
[2026-01-10 13:02:31]     "exeErrorDiag": "",
[2026-01-10 13:02:31]     "pilotErrorCode": 0,
[2026-01-10 13:02:31]     "pilotErrorDiag": "",
[2026-01-10 13:02:31]  *** Listing of results directory ***
[2026-01-10 13:02:31] total 440460
[2026-01-10 13:02:31] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:09 queuedata.json
[2026-01-10 13:02:31] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:09 pilot3.tar.gz
[2026-01-10 13:02:31] -rwx------. 1 boincer umatlas     36322 Jan 10 08:10 runpilot2-wrapper.sh
[2026-01-10 13:02:31] -rw-r--r--. 1 boincer umatlas       100 Jan 10 09:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 13:02:31] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 09:20 run_atlas
[2026-01-10 13:02:31] -rw-r--r--. 1 boincer umatlas       105 Jan 10 09:20 job.xml
[2026-01-10 13:02:31] -rw-r--r--. 2 boincer umatlas 225673483 Jan 10 09:20 EVNT.47898824._000424.pool.root.1
[2026-01-10 13:02:31] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:20 start_atlas.sh
[2026-01-10 13:02:31] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 09:20 shared
[2026-01-10 13:02:31] -rw-r--r--. 2 boincer umatlas    592407 Jan 10 09:20 input.tar.gz
[2026-01-10 13:02:31] -rw-r--r--. 1 boincer umatlas         0 Jan 10 09:20 boinc_lockfile
[2026-01-10 13:02:31] -rw-r--r--. 1 boincer umatlas      2516 Jan 10 09:20 pandaJob.out
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas        57 Jan 10 09:20 setup.sh.local
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas    989556 Jan 10 09:20 agis_schedconf.cvmfs.json
[2026-01-10 13:02:31] drwx------. 5 boincer umatlas      4096 Jan 10 09:21 pilot3
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas 217017370 Jan 10 13:00 HITS.47898826._040151.pool.root.1
[2026-01-10 13:02:31] -rw-r--r--. 1 boincer umatlas       530 Jan 10 13:00 boinc_task_state.xml
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas      1045 Jan 10 13:01 memory_monitor_summary.json
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas   1516240 Jan 10 13:01 agis_ddmendpoints.agis.ALL.json
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas    471451 Jan 10 13:01 log.47898826._040151.job.log.tgz.1
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas        95 Jan 10 13:01 pilot_heartbeat.json
[2026-01-10 13:02:31] -rw-r--r--. 1 boincer umatlas      6945 Jan 10 13:01 init_data.xml
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas      7772 Jan 10 13:01 heartbeat.json
[2026-01-10 13:02:31] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 13:02 boinc_mmap_file
[2026-01-10 13:02:31] -rw-r--r--. 1 boincer umatlas        28 Jan 10 13:02 wrapper_checkpoint.txt
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas      4940 Jan 10 13:02 pilotlog.txt
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas   1739193 Jan 10 13:02 log.47898826._040151.job.log.1
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas       357 Jan 10 13:02 output.list
[2026-01-10 13:02:31] -rw-r--r--. 1 boincer umatlas       620 Jan 10 13:02 runtime_log
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas   2232320 Jan 10 13:02 result.tar.gz
[2026-01-10 13:02:31] -rw-r--r--. 1 boincer umatlas      9338 Jan 10 13:02 runtime_log.err
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas       655 Jan 10 13:02 LkyLDmTuny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqimKDmLxF40m.diag
[2026-01-10 13:02:31] -rw-r--r--. 1 boincer umatlas     21456 Jan 10 13:02 stderr.txt
[2026-01-10 13:02:31] HITS file was successfully produced:
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas 217017370 Jan 10 13:00 shared/HITS.pool.root.1
[2026-01-10 13:02:31]  *** Contents of shared directory: ***
[2026-01-10 13:02:31] total 435100
[2026-01-10 13:02:31] -rw-r--r--. 2 boincer umatlas 225673483 Jan 10 09:20 ATLAS.root_0
[2026-01-10 13:02:31] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:20 start_atlas.sh
[2026-01-10 13:02:31] -rw-r--r--. 2 boincer umatlas    592407 Jan 10 09:20 input.tar.gz
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas 217017370 Jan 10 13:00 HITS.pool.root.1
[2026-01-10 13:02:31] -rw-------. 1 boincer umatlas   2232320 Jan 10 13:02 result.tar.gz
13:02:33 (3563863): run_atlas exited; CPU time 46369.378674
13:02:33 (3563863): called boinc_finish(0)

</stderr_txt>
]]>

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