Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:11:15 (2080809): wrapper (7.7.26015): starting
08:11:15 (2080809): wrapper: running run_atlas (--nthreads 11)
[2026-01-10 08:11:15] Arguments: --nthreads 11
[2026-01-10 08:11:15] Threads: 11
[2026-01-10 08:11:15] Checking for CVMFS
[2026-01-10 08:11:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:11:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:11:16] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:11:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:11:16] 2.13.3.0 12448 24364 235664 154980 2 539 30313034 40960000 19137 16776704 0 92821259 99.648 85931620 37462 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 08:11:16] CVMFS is ok
[2026-01-10 08:11:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:11:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:11:16] Further information can be found at the LHC@home message board.
[2026-01-10 08:11:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:11:16] Checking for apptainer binary...
[2026-01-10 08:11:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:11:16] Running /usr/bin/apptainer --version
[2026-01-10 08:11:16] apptainer version 1.4.5-2.el9
[2026-01-10 08:11:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:11:17] c-212-19.aglt2.org
[2026-01-10 08:11:17] apptainer works
[2026-01-10 08:11:17] Set ATHENA_PROC_NUMBER=11
[2026-01-10 08:11:17] Set ATHENA_CORE_NUMBER=11
[2026-01-10 08:11:17] Starting ATLAS job with PandaID=6965382750
[2026-01-10 08:11:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 11:12:24]  *** The last 200 lines of the pilot log: ***
[2026-01-10 11:12:24] 2026-01-10 16:11:45,666 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:12:24] 2026-01-10 16:11:46,076 | INFO     | time since job start (10800s) is within the limit (349056.0s)
[2026-01-10 11:12:24] 2026-01-10 16:11:48,085 | INFO     | time since job start (10802s) is within the limit (349056.0s)
[2026-01-10 11:12:24] 2026-01-10 16:11:48,170 | INFO     | monitor loop #722: job 0:6965382750 is in state 'finished'
[2026-01-10 11:12:24] 2026-01-10 16:11:48,171 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:12:24] 2026-01-10 16:11:50,094 | INFO     | time since job start (10804s) is within the limit (349056.0s)
[2026-01-10 11:12:24] 2026-01-10 16:11:50,675 | INFO     | monitor loop #723: job 0:6965382750 is in state 'finished'
[2026-01-10 11:12:24] 2026-01-10 16:11:50,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:12:24] 2026-01-10 16:11:51,824 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 11:12:24] 2026-01-10 16:11:51,869 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3229.972093750001
[2026-01-10 11:12:24] 2026-01-10 16:11:51,896 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965382750/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 11:12:24] 2026-01-10 16:11:51,897 | INFO     | extracted standard info from prmon json
[2026-01-10 11:12:24] 2026-01-10 16:11:51,897 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 11:12:24] 2026-01-10 16:11:51,897 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 11:12:24] 2026-01-10 16:11:51,903 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 11:12:24] 2026-01-10 16:11:51,904 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 11:12:24] 2026-01-10 16:11:51,928 | INFO     | fitting pss+swap vs Time
[2026-01-10 11:12:24] 2026-01-10 16:11:51,931 | INFO     | sum of square deviations: 1661780306.7200048
[2026-01-10 11:12:24] 2026-01-10 16:11:51,932 | INFO     | sum of deviations: -21158875722.96
[2026-01-10 11:12:24] 2026-01-10 16:11:51,932 | INFO     | mean x: 1768056143.04
[2026-01-10 11:12:24] 2026-01-10 16:11:51,932 | INFO     | mean y: 2752538.137142857
[2026-01-10 11:12:24] 2026-01-10 16:11:51,932 | INFO     | intersect: 22514801844.8465
[2026-01-10 11:12:24] 2026-01-10 16:11:51,932 | INFO     | chi2: 2.4787783302390127
[2026-01-10 11:12:24] 2026-01-10 16:11:51,932 | INFO     | sum of square deviations: 1523370544.211763
[2026-01-10 11:12:24] 2026-01-10 16:11:51,933 | INFO     | sum of deviations: -19992595961.45884
[2026-01-10 11:12:24] 2026-01-10 16:11:51,933 | INFO     | mean x: 1768055990.5411766
[2026-01-10 11:12:24] 2026-01-10 16:11:51,933 | INFO     | mean y: 2753833.494117647
[2026-01-10 11:12:24] 2026-01-10 16:11:51,933 | INFO     | intersect: 23206582468.907806
[2026-01-10 11:12:24] 2026-01-10 16:11:51,934 | INFO     | chi2: 2.4756051311832845
[2026-01-10 11:12:24] 2026-01-10 16:11:51,934 | INFO     | current chi2=2.4756051311832845 (change=0.128014635960701 %)
[2026-01-10 11:12:24] 2026-01-10 16:11:51,934 | INFO     | right removable region: 169
[2026-01-10 11:12:24] 2026-01-10 16:11:51,934 | INFO     | sum of square deviations: 1523366274.211763
[2026-01-10 11:12:24] 2026-01-10 16:11:51,935 | INFO     | sum of deviations: -61053639836.48236
[2026-01-10 11:12:24] 2026-01-10 16:11:51,935 | INFO     | mean x: 1768056295.5411766
[2026-01-10 11:12:24] 2026-01-10 16:11:51,935 | INFO     | mean y: 2796091.711764706
[2026-01-10 11:12:24] 2026-01-10 16:11:51,935 | INFO     | intersect: 70863149314.6758
[2026-01-10 11:12:24] 2026-01-10 16:11:51,935 | INFO     | chi2: 0.27893461408539805
[2026-01-10 11:12:24] 2026-01-10 16:11:51,935 | INFO     | current chi2=0.27893461408539805 (change=88.747093248209 %)
[2026-01-10 11:12:24] 2026-01-10 16:11:51,935 | INFO     | sum of square deviations: 1392869735.781813
[2026-01-10 11:12:24] 2026-01-10 16:11:51,936 | INFO     | sum of deviations: -60888626914.34547
[2026-01-10 11:12:24] 2026-01-10 16:11:51,936 | INFO     | mean x: 1768056448.0363636
[2026-01-10 11:12:24] 2026-01-10 16:11:51,936 | INFO     | mean y: 2795812.890909091
[2026-01-10 11:12:24] 2026-01-10 16:11:51,936 | INFO     | intersect: 77292528414.8868
[2026-01-10 11:12:24] 2026-01-10 16:11:51,937 | INFO     | chi2: 0.23483425671612906
[2026-01-10 11:12:24] 2026-01-10 16:11:51,937 | INFO     | current chi2=0.23483425671612906 (change=15.810284970859625 %)
[2026-01-10 11:12:24] 2026-01-10 16:11:51,937 | INFO     | left removable region: 20
[2026-01-10 11:12:24] 2026-01-10 16:11:51,937 | INFO     | sum of square deviations: 1025679991.7583911
[2026-01-10 11:12:24] 2026-01-10 16:11:51,938 | INFO     | sum of deviations: -48018451466.7785
[2026-01-10 11:12:24] 2026-01-10 16:11:51,938 | INFO     | mean x: 1768056570.0402684
[2026-01-10 11:12:24] 2026-01-10 16:11:51,938 | INFO     | mean y: 2785079.463087248
[2026-01-10 11:12:24] 2026-01-10 16:11:51,938 | INFO     | intersect: 82776495477.62434
[2026-01-10 11:12:24] 2026-01-10 16:11:51,938 | INFO     | chi2: 0.21982607173534768
[2026-01-10 11:12:24] 2026-01-10 16:11:51,938 | INFO     | current memory leak: -46.82 B/s (using 149 data points, chi2=0.22)
[2026-01-10 11:12:24] 2026-01-10 16:11:51,939 | INFO     | could have reported an average CPU frequency of 3232 MHz (9 samples)
[2026-01-10 11:12:24] 2026-01-10 16:11:51,939 | INFO     | ..............................
[2026-01-10 11:12:24] 2026-01-10 16:11:51,939 | INFO     | . Timing measurements:
[2026-01-10 11:12:24] 2026-01-10 16:11:51,939 | INFO     | . get job = 0 s
[2026-01-10 11:12:24] 2026-01-10 16:11:51,939 | INFO     | . initial setup = 4 s
[2026-01-10 11:12:24] 2026-01-10 16:11:51,939 | INFO     | . payload setup = 40 s
[2026-01-10 11:12:24] 2026-01-10 16:11:51,939 | INFO     | . stage-in = 0 s
[2026-01-10 11:12:24] 2026-01-10 16:11:51,939 | INFO     | . payload execution = 10680 s
[2026-01-10 11:12:24] 2026-01-10 16:11:51,939 | INFO     | . stage-out = 1 s
[2026-01-10 11:12:24] 2026-01-10 16:11:51,939 | INFO     | . log creation = 0 s
[2026-01-10 11:12:24] 2026-01-10 16:11:51,939 | INFO     | ..............................
[2026-01-10 11:12:24] 2026-01-10 16:11:52,015 | INFO     | 
[2026-01-10 11:12:24] 2026-01-10 16:11:52,019 | INFO     | job summary report
[2026-01-10 11:12:24] 2026-01-10 16:11:52,019 | INFO     | --------------------------------------------------
[2026-01-10 11:12:24] 2026-01-10 16:11:52,019 | INFO     | PanDA job id: 6965382750
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | task id: 47898826
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | errors: (none)
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | pilot state: finished 
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | transexitcode: 0
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | exeerrorcode: 0
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | exeerrordiag: 
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | exitcode: 0
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | exitmsg: OK
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | cpuconsumptiontime: 46230 s
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | nevents: 400
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | neventsw: 0
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | pid: 2104477
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | pgrp: 2104477
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | corecount: 11
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | event service: False
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | sizes: {0: 2283092, 1: 2283777, 2: 2283976, 13: 2283976, 24: 2284032, 25: 2284322, 34: 2284478, 10725: 2313534, 10726: 2313533, 10727: 2322587, 10729: 2322643, 107
[2026-01-10 11:12:24] 2026-01-10 16:11:52,020 | INFO     | --------------------------------------------------
[2026-01-10 11:12:24] 2026-01-10 16:11:52,021 | INFO     | 
[2026-01-10 11:12:24] 2026-01-10 16:11:52,021 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 11:12:24] 2026-01-10 16:11:52,044 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,044 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,044 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,044 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,044 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,044 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,045 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,045 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,045 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,045 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,045 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,045 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,045 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,045 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,045 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,045 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,045 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,046 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 11:12:24] 2026-01-10 16:11:52,046 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,046 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 11:12:24] 2026-01-10 16:11:52,046 | INFO     | job 6965382750 has completed (purged errors)
[2026-01-10 11:12:24] 2026-01-10 16:11:52,046 | INFO     | overall cleanup function is called
[2026-01-10 11:12:24] 2026-01-10 16:11:53,054 | INFO     | --- collectZombieJob: --- 10, [2104477]
[2026-01-10 11:12:24] 2026-01-10 16:11:53,055 | INFO     | zombie collector waiting for pid 2104477
[2026-01-10 11:12:24] 2026-01-10 16:11:53,055 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 11:12:24] 2026-01-10 16:11:53,055 | INFO     | collected zombie processes
[2026-01-10 11:12:24] 2026-01-10 16:11:53,055 | INFO     | will attempt to kill all subprocesses of pid=2104477
[2026-01-10 11:12:24] 2026-01-10 16:11:54,031 | INFO     | process IDs to be killed: [2104477] (in reverse order)
[2026-01-10 11:12:24] 2026-01-10 16:11:54,184 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 11:12:24] 2026-01-10 16:11:54,185 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 11:12:24] 2026-01-10 16:11:54,229 | INFO     | did not find any defunct processes belonging to 2104477
[2026-01-10 11:12:24] 2026-01-10 16:11:54,338 | INFO     | did not find any defunct processes belonging to 2104477
[2026-01-10 11:12:24] 2026-01-10 16:11:54,339 | INFO     | ready for new job
[2026-01-10 11:12:24] 2026-01-10 16:11:54,340 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 11:12:24] 2026-01-10 16:11:54,342 | INFO     | ***************************************
[2026-01-10 11:12:24] 2026-01-10 16:11:54,342 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 11:12:24] 2026-01-10 16:11:54,342 | INFO     | ***************************************
[2026-01-10 11:12:24] 2026-01-10 16:11:54,342 | INFO     | 
[2026-01-10 11:12:24] 2026-01-10 16:11:54,367 | INFO     | architecture information:
[2026-01-10 11:12:24] 2026-01-10 16:11:54,392 | INFO     | executing command: cat /etc/os-release
[2026-01-10 11:12:24] 2026-01-10 16:11:54,519 | INFO     | cat /etc/os-release:
[2026-01-10 11:12:24] NAME="CentOS Linux"
[2026-01-10 11:12:24] VERSION="7 (Core)"
[2026-01-10 11:12:24] ID="centos"
[2026-01-10 11:12:24] ID_LIKE="rhel fedora"
[2026-01-10 11:12:24] VERSION_ID="7"
[2026-01-10 11:12:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 11:12:24] ANSI_COLOR="0;31"
[2026-01-10 11:12:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 11:12:24] HOME_URL="https://www.centos.org/"
[2026-01-10 11:12:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 11:12:24] 
[2026-01-10 11:12:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 11:12:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 11:12:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 11:12:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 11:12:24] 
[2026-01-10 11:12:24] 2026-01-10 16:11:54,519 | INFO     | ***************************************
[2026-01-10 11:12:24] 2026-01-10 16:11:55,023 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 11:12:24] 2026-01-10 16:11:55,155 | INFO     | sufficient remaining disk space (128582680576 B)
[2026-01-10 11:12:24] 2026-01-10 16:11:55,155 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 11:12:24] 2026-01-10 16:11:55,155 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 11:12:24] 2026-01-10 16:11:55,155 | INFO     | update_server=False
[2026-01-10 11:12:24] 2026-01-10 16:11:55,155 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 11:12:24] 2026-01-10 16:11:55,156 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:12:24] 2026-01-10 16:11:55,156 | INFO     | aborting loop
[2026-01-10 11:12:24] 2026-01-10 16:11:55,156 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 11:12:24] 2026-01-10 16:11:55,233 | INFO     | all data control threads have been joined
[2026-01-10 11:12:24] 2026-01-10 16:11:55,882 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 11:12:24] 2026-01-10 16:11:56,161 | INFO     | [job] retrieve thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:11:56,165 | INFO     | [job] job monitor thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:11:56,239 | INFO     | [data] control thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:11:56,252 | INFO     | [data] copytool_in thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:11:56,277 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:11:56,364 | INFO     | all payload control threads have been joined
[2026-01-10 11:12:24] 2026-01-10 16:11:56,387 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:11:56,461 | INFO     | all job control threads have been joined
[2026-01-10 11:12:24] 2026-01-10 16:11:56,533 | INFO     | [payload] validate_post thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:11:56,625 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:11:56,964 | INFO     | [job] validate thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:11:56,968 | INFO     | [payload] failed_post thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:11:57,051 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:12:24] 2026-01-10 16:11:57,374 | INFO     | [payload] control thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:11:57,467 | INFO     | [job] control thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:11:57,888 | INFO     | [data] copytool_out thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:11:58,057 | INFO     | [job] queue monitor thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:11:59,164 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:12:04,317 | INFO     | [monitor] cgroup control has ended
[2026-01-10 11:12:24] 2026-01-10 16:12:05,286 | INFO     | job.realtimelogging is not enabled
[2026-01-10 11:12:24] 2026-01-10 16:12:06,292 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 11:12:24] 2026-01-10 16:12:07,250 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140484617434944)>', '<ExcThread(monitor, started 140484261431040)>']
[2026-01-10 11:12:24] 2026-01-10 16:12:12,275 | INFO     | all workflow threads have been joined
[2026-01-10 11:12:24] 2026-01-10 16:12:12,276 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 11:12:24] 2026-01-10 16:12:12,276 | INFO     | traces error code: 0
[2026-01-10 11:12:24] 2026-01-10 16:12:12,276 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 11:12:24] 2026-01-10 16:12:23,870 | INFO     | PID=2086453 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 11:12:24] 2026-01-10 16:12:23,871 | INFO     | .. there are 19 such processes running
[2026-01-10 11:12:24] 2026-01-10 16:12:23,871 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 11:12:24] 2026-01-10 16:12:23,871 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 11:12:24] 2026-01-10 16:12:23,871 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 11:12:24] 2026-01-10 16:12:23,872 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 11:12:24] 2026-01-10 16:12:23,872 | INFO     | [monitor] control thread has ended
[2026-01-10 11:12:24] 2026-01-10 16:12:24,000 [wrapper] ==== pilot stdout END ====
[2026-01-10 11:12:24] 2026-01-10 16:12:24,003 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 11:12:24] 2026-01-10 16:12:24,005 [wrapper] pilotpid: 2086453
[2026-01-10 11:12:24] 2026-01-10 16:12:24,008 [wrapper] Pilot exit status: 0
[2026-01-10 11:12:24] 2026-01-10 16:12:24,048 [wrapper] pandaids: 6965382750
[2026-01-10 11:12:24] 2026-01-10 16:12:24,185 [wrapper] cleanup supervisor_pilot 3228246 2086454
[2026-01-10 11:12:24] 2026-01-10 16:12:24,190 [wrapper] Test setup, not cleaning
[2026-01-10 11:12:24] 2026-01-10 16:12:24,194 [wrapper] apfmon messages muted
[2026-01-10 11:12:24] 2026-01-10 16:12:24,199 [wrapper] ==== wrapper stdout END ====
[2026-01-10 11:12:24] 2026-01-10 16:12:24,202 [wrapper] ==== wrapper stderr END ====
[2026-01-10 11:12:24]  *** Error codes and diagnostics ***
[2026-01-10 11:12:24]     "exeErrorCode": 0,
[2026-01-10 11:12:24]     "exeErrorDiag": "",
[2026-01-10 11:12:24]     "pilotErrorCode": 0,
[2026-01-10 11:12:24]     "pilotErrorDiag": "",
[2026-01-10 11:12:24]  *** Listing of results directory ***
[2026-01-10 11:12:24] total 446172
[2026-01-10 11:12:24] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:09 queuedata.json
[2026-01-10 11:12:24] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:09 pilot3.tar.gz
[2026-01-10 11:12:24] -rwx------. 1 boincer umatlas     36322 Jan 10 08:10 runpilot2-wrapper.sh
[2026-01-10 11:12:24] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 11:12:24] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:11 run_atlas
[2026-01-10 11:12:24] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:11 job.xml
[2026-01-10 11:12:24] -rw-r--r--. 2 boincer umatlas 227898373 Jan 10 08:11 EVNT.47898824._001108.pool.root.1
[2026-01-10 11:12:24] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:11 start_atlas.sh
[2026-01-10 11:12:24] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:11 shared
[2026-01-10 11:12:24] -rw-r--r--. 2 boincer umatlas    592405 Jan 10 08:11 input.tar.gz
[2026-01-10 11:12:24] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:11 boinc_lockfile
[2026-01-10 11:12:24] -rw-r--r--. 1 boincer umatlas      2519 Jan 10 08:11 pandaJob.out
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas        57 Jan 10 08:11 setup.sh.local
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas    989556 Jan 10 08:11 agis_schedconf.cvmfs.json
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas   1516240 Jan 10 08:11 agis_ddmendpoints.agis.ALL.json
[2026-01-10 11:12:24] drwx------. 5 boincer umatlas      4096 Jan 10 08:11 pilot3
[2026-01-10 11:12:24] -rw-r--r--. 1 boincer umatlas      6958 Jan 10 11:09 init_data.xml
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas 221274245 Jan 10 11:10 HITS.47898826._040326.pool.root.1
[2026-01-10 11:12:24] -rw-r--r--. 1 boincer umatlas       531 Jan 10 11:10 boinc_task_state.xml
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas      1048 Jan 10 11:11 memory_monitor_summary.json
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas    454955 Jan 10 11:11 log.47898826._040326.job.log.tgz.1
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas      7787 Jan 10 11:11 heartbeat.json
[2026-01-10 11:12:24] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 11:12 boinc_mmap_file
[2026-01-10 11:12:24] -rw-r--r--. 1 boincer umatlas        28 Jan 10 11:12 wrapper_checkpoint.txt
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas        95 Jan 10 11:12 pilot_heartbeat.json
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas       823 Jan 10 11:12 pilotlog.txt
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas   1437695 Jan 10 11:12 log.47898826._040326.job.log.1
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas       357 Jan 10 11:12 output.list
[2026-01-10 11:12:24] -rw-r--r--. 1 boincer umatlas       620 Jan 10 11:12 runtime_log
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas   1914880 Jan 10 11:12 result.tar.gz
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas       656 Jan 10 11:12 zV5NDmTuny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmjUhKDmU32Hbm.diag
[2026-01-10 11:12:24] -rw-r--r--. 1 boincer umatlas      9345 Jan 10 11:12 runtime_log.err
[2026-01-10 11:12:24] -rw-r--r--. 1 boincer umatlas     20541 Jan 10 11:12 stderr.txt
[2026-01-10 11:12:24] HITS file was successfully produced:
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas 221274245 Jan 10 11:10 shared/HITS.pool.root.1
[2026-01-10 11:12:24]  *** Contents of shared directory: ***
[2026-01-10 11:12:24] total 441128
[2026-01-10 11:12:24] -rw-r--r--. 2 boincer umatlas 227898373 Jan 10 08:11 ATLAS.root_0
[2026-01-10 11:12:24] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:11 start_atlas.sh
[2026-01-10 11:12:24] -rw-r--r--. 2 boincer umatlas    592405 Jan 10 08:11 input.tar.gz
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas 221274245 Jan 10 11:10 HITS.pool.root.1
[2026-01-10 11:12:24] -rw-------. 1 boincer umatlas   1914880 Jan 10 11:12 result.tar.gz
11:12:46 (2080809): run_atlas exited; CPU time 46644.462825
11:12:46 (2080809): called boinc_finish(0)

</stderr_txt>
]]>

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