Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:10:48 (4166312): wrapper (7.7.26015): starting
08:10:48 (4166312): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 08:10:48] Arguments: --nthreads 8
[2026-01-10 08:10:48] Threads: 8
[2026-01-10 08:10:48] Checking for CVMFS
[2026-01-10 08:10:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:10:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:10:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:10:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:10:52] 2.13.3.0 3539256 18391 220072 154980 3 405 29163497 40960001 13417 16776704 0 40508274 99.608 49862841 34955 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 08:10:52] CVMFS is ok
[2026-01-10 08:10:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:10:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:10:52] Further information can be found at the LHC@home message board.
[2026-01-10 08:10:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:10:52] Checking for apptainer binary...
[2026-01-10 08:10:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:10:52] Running /usr/bin/apptainer --version
[2026-01-10 08:10:52] apptainer version 1.4.5-2.el9
[2026-01-10 08:10:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:10:53] c-210-31-1.aglt2.org
[2026-01-10 08:10:53] apptainer works
[2026-01-10 08:10:54] Set ATHENA_PROC_NUMBER=8
[2026-01-10 08:10:54] Set ATHENA_CORE_NUMBER=8
[2026-01-10 08:10:54] Starting ATLAS job with PandaID=6965382680
[2026-01-10 08:10:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 12:55:05]  *** The last 200 lines of the pilot log: ***
[2026-01-10 12:55:05] 2026-01-10 17:54:26,031 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:55:05] 2026-01-10 17:54:27,638 | INFO     | PID=4175696 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 12:55:05] 2026-01-10 17:54:27,638 | INFO     | .. there are 12 such processes running
[2026-01-10 12:55:05] 2026-01-10 17:54:28,536 | INFO     | monitor loop #1054: job 0:6965382680 is in state 'finished'
[2026-01-10 12:55:05] 2026-01-10 17:54:28,541 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:55:05] 2026-01-10 17:54:28,642 | INFO     | time since job start (16919s) is within the limit (349056.0s)
[2026-01-10 12:55:05] 2026-01-10 17:54:30,650 | INFO     | time since job start (16921s) is within the limit (349056.0s)
[2026-01-10 12:55:05] 2026-01-10 17:54:31,046 | INFO     | monitor loop #1055: job 0:6965382680 is in state 'finished'
[2026-01-10 12:55:05] 2026-01-10 17:54:31,046 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:55:05] 2026-01-10 17:54:31,715 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 12:55:05] 2026-01-10 17:54:31,725 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2923.819928571428
[2026-01-10 12:55:05] 2026-01-10 17:54:31,756 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965382680/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 12:55:05] 2026-01-10 17:54:31,756 | INFO     | extracted standard info from prmon json
[2026-01-10 12:55:05] 2026-01-10 17:54:31,757 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 12:55:05] 2026-01-10 17:54:31,757 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 12:55:05] 2026-01-10 17:54:31,757 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 12:55:05] 2026-01-10 17:54:31,757 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 12:55:05] 2026-01-10 17:54:31,775 | INFO     | fitting pss+swap vs Time
[2026-01-10 12:55:05] 2026-01-10 17:54:31,776 | INFO     | sum of square deviations: 6448494594.349056
[2026-01-10 12:55:05] 2026-01-10 17:54:31,778 | INFO     | sum of deviations: -71732423643.57088
[2026-01-10 12:55:05] 2026-01-10 17:54:31,778 | INFO     | mean x: 1768059226.5381818
[2026-01-10 12:55:05] 2026-01-10 17:54:31,778 | INFO     | mean y: 2606674.578181818
[2026-01-10 12:55:05] 2026-01-10 17:54:31,778 | INFO     | intersect: 19670324714.708397
[2026-01-10 12:55:05] 2026-01-10 17:54:31,778 | INFO     | chi2: 1.9888674953580907
[2026-01-10 12:55:05] 2026-01-10 17:54:31,787 | INFO     | sum of square deviations: 6103130557.466699
[2026-01-10 12:55:05] 2026-01-10 17:54:31,789 | INFO     | sum of deviations: -70044925842.66667
[2026-01-10 12:55:05] 2026-01-10 17:54:31,789 | INFO     | mean x: 1768059074.0444446
[2026-01-10 12:55:05] 2026-01-10 17:54:31,789 | INFO     | mean y: 2607420.222222222
[2026-01-10 12:55:05] 2026-01-10 17:54:31,789 | INFO     | intersect: 20294417592.19768
[2026-01-10 12:55:05] 2026-01-10 17:54:31,789 | INFO     | chi2: 1.9844002701421422
[2026-01-10 12:55:05] 2026-01-10 17:54:31,790 | INFO     | current chi2=1.9844002701421422 (change=0.2246115051090542 %)
[2026-01-10 12:55:05] 2026-01-10 17:54:31,790 | INFO     | right removable region: 269
[2026-01-10 12:55:05] 2026-01-10 17:54:31,790 | INFO     | sum of square deviations: 6103073583.466699
[2026-01-10 12:55:05] 2026-01-10 17:54:31,798 | INFO     | sum of deviations: -112821683564.06671
[2026-01-10 12:55:05] 2026-01-10 17:54:31,798 | INFO     | mean x: 1768059379.0444446
[2026-01-10 12:55:05] 2026-01-10 17:54:31,798 | INFO     | mean y: 2624651.422222222
[2026-01-10 12:55:05] 2026-01-10 17:54:31,798 | INFO     | intersect: 32687047189.83205
[2026-01-10 12:55:05] 2026-01-10 17:54:31,799 | INFO     | chi2: 0.5400130888114818
[2026-01-10 12:55:05] 2026-01-10 17:54:31,799 | INFO     | current chi2=0.5400130888114818 (change=72.84821185564935 %)
[2026-01-10 12:55:05] 2026-01-10 17:54:31,799 | INFO     | sum of square deviations: 5770210825.562292
[2026-01-10 12:55:05] 2026-01-10 17:54:31,806 | INFO     | sum of deviations: -107975960100.12807
[2026-01-10 12:55:05] 2026-01-10 17:54:31,806 | INFO     | mean x: 1768059531.5509434
[2026-01-10 12:55:05] 2026-01-10 17:54:31,806 | INFO     | mean y: 2622407.713207547
[2026-01-10 12:55:05] 2026-01-10 17:54:31,806 | INFO     | intersect: 33087709106.394154
[2026-01-10 12:55:05] 2026-01-10 17:54:31,807 | INFO     | chi2: 0.5274103391158595
[2026-01-10 12:55:05] 2026-01-10 17:54:31,807 | INFO     | current chi2=0.5274103391158595 (change=2.333785968662301 %)
[2026-01-10 12:55:05] 2026-01-10 17:54:31,807 | INFO     | left removable region: 20
[2026-01-10 12:55:05] 2026-01-10 17:54:31,807 | INFO     | sum of square deviations: 4786884475.518114
[2026-01-10 12:55:05] 2026-01-10 17:54:31,809 | INFO     | sum of deviations: -82948674198.31325
[2026-01-10 12:55:05] 2026-01-10 17:54:31,809 | INFO     | mean x: 1768059653.5542169
[2026-01-10 12:55:05] 2026-01-10 17:54:31,809 | INFO     | mean y: 2612394.393574297
[2026-01-10 12:55:05] 2026-01-10 17:54:31,809 | INFO     | intersect: 30640118880.275
[2026-01-10 12:55:05] 2026-01-10 17:54:31,816 | INFO     | chi2: 0.4934458037736462
[2026-01-10 12:55:05] 2026-01-10 17:54:31,816 | INFO     | current memory leak: -17.33 B/s (using 249 data points, chi2=0.49)
[2026-01-10 12:55:05] 2026-01-10 17:54:31,817 | INFO     | could have reported an average CPU frequency of 2935 MHz (13 samples)
[2026-01-10 12:55:05] 2026-01-10 17:54:31,817 | INFO     | ..............................
[2026-01-10 12:55:05] 2026-01-10 17:54:31,817 | INFO     | . Timing measurements:
[2026-01-10 12:55:05] 2026-01-10 17:54:31,817 | INFO     | . get job = 1 s
[2026-01-10 12:55:05] 2026-01-10 17:54:31,817 | INFO     | . initial setup = 4 s
[2026-01-10 12:55:05] 2026-01-10 17:54:31,817 | INFO     | . payload setup = 26 s
[2026-01-10 12:55:05] 2026-01-10 17:54:31,817 | INFO     | . stage-in = 0 s
[2026-01-10 12:55:05] 2026-01-10 17:54:31,817 | INFO     | . payload execution = 16783 s
[2026-01-10 12:55:05] 2026-01-10 17:54:31,817 | INFO     | . stage-out = 2 s
[2026-01-10 12:55:05] 2026-01-10 17:54:31,817 | INFO     | . log creation = 0 s
[2026-01-10 12:55:05] 2026-01-10 17:54:31,817 | INFO     | ..............................
[2026-01-10 12:55:05] 2026-01-10 17:54:32,011 | INFO     | 
[2026-01-10 12:55:05] 2026-01-10 17:54:32,011 | INFO     | job summary report
[2026-01-10 12:55:05] 2026-01-10 17:54:32,011 | INFO     | --------------------------------------------------
[2026-01-10 12:55:05] 2026-01-10 17:54:32,011 | INFO     | PanDA job id: 6965382680
[2026-01-10 12:55:05] 2026-01-10 17:54:32,011 | INFO     | task id: 47898826
[2026-01-10 12:55:05] 2026-01-10 17:54:32,011 | INFO     | errors: (none)
[2026-01-10 12:55:05] 2026-01-10 17:54:32,011 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 12:55:05] 2026-01-10 17:54:32,011 | INFO     | pilot state: finished 
[2026-01-10 12:55:05] 2026-01-10 17:54:32,012 | INFO     | transexitcode: 0
[2026-01-10 12:55:05] 2026-01-10 17:54:32,012 | INFO     | exeerrorcode: 0
[2026-01-10 12:55:05] 2026-01-10 17:54:32,012 | INFO     | exeerrordiag: 
[2026-01-10 12:55:05] 2026-01-10 17:54:32,012 | INFO     | exitcode: 0
[2026-01-10 12:55:05] 2026-01-10 17:54:32,012 | INFO     | exitmsg: OK
[2026-01-10 12:55:05] 2026-01-10 17:54:32,012 | INFO     | cpuconsumptiontime: 53319 s
[2026-01-10 12:55:05] 2026-01-10 17:54:32,012 | INFO     | nevents: 400
[2026-01-10 12:55:05] 2026-01-10 17:54:32,012 | INFO     | neventsw: 0
[2026-01-10 12:55:05] 2026-01-10 17:54:32,012 | INFO     | pid: 4187393
[2026-01-10 12:55:05] 2026-01-10 17:54:32,012 | INFO     | pgrp: 4187393
[2026-01-10 12:55:05] 2026-01-10 17:54:32,012 | INFO     | corecount: 8
[2026-01-10 12:55:05] 2026-01-10 17:54:32,012 | INFO     | event service: False
[2026-01-10 12:55:05] 2026-01-10 17:54:32,012 | INFO     | sizes: {0: 2283691, 1: 2283747, 2: 2283974, 3: 2283974, 14: 2284002, 26: 2284030, 37: 2284186, 41: 2284476, 48: 2284504, 16813: 2316402, 16816: 2325400, 16819: 232
[2026-01-10 12:55:05] 2026-01-10 17:54:32,012 | INFO     | --------------------------------------------------
[2026-01-10 12:55:05] 2026-01-10 17:54:32,012 | INFO     | 
[2026-01-10 12:55:05] 2026-01-10 17:54:32,013 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 12:55:05] 2026-01-10 17:54:32,217 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,217 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,217 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,218 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,218 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,218 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,218 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,218 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,218 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,218 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,218 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,218 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,218 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,218 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,218 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,218 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,218 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,218 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 12:55:05] 2026-01-10 17:54:32,219 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,219 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 12:55:05] 2026-01-10 17:54:32,219 | INFO     | job 6965382680 has completed (purged errors)
[2026-01-10 12:55:05] 2026-01-10 17:54:32,219 | INFO     | overall cleanup function is called
[2026-01-10 12:55:05] 2026-01-10 17:54:33,232 | INFO     | --- collectZombieJob: --- 10, [4187393]
[2026-01-10 12:55:05] 2026-01-10 17:54:33,232 | INFO     | zombie collector waiting for pid 4187393
[2026-01-10 12:55:05] 2026-01-10 17:54:33,232 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 12:55:05] 2026-01-10 17:54:33,232 | INFO     | collected zombie processes
[2026-01-10 12:55:05] 2026-01-10 17:54:33,232 | INFO     | will attempt to kill all subprocesses of pid=4187393
[2026-01-10 12:55:05] 2026-01-10 17:54:33,653 | INFO     | process IDs to be killed: [4187393] (in reverse order)
[2026-01-10 12:55:05] 2026-01-10 17:54:33,814 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 12:55:05] 2026-01-10 17:54:33,814 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 12:55:05] 2026-01-10 17:54:33,829 | INFO     | did not find any defunct processes belonging to 4187393
[2026-01-10 12:55:05] 2026-01-10 17:54:33,840 | INFO     | did not find any defunct processes belonging to 4187393
[2026-01-10 12:55:05] 2026-01-10 17:54:33,840 | INFO     | ready for new job
[2026-01-10 12:55:05] 2026-01-10 17:54:33,840 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 12:55:05] 2026-01-10 17:54:33,843 | INFO     | ***************************************
[2026-01-10 12:55:05] 2026-01-10 17:54:33,843 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 12:55:05] 2026-01-10 17:54:33,843 | INFO     | ***************************************
[2026-01-10 12:55:05] 2026-01-10 17:54:33,843 | INFO     | 
[2026-01-10 12:55:05] 2026-01-10 17:54:33,846 | INFO     | architecture information:
[2026-01-10 12:55:05] 2026-01-10 17:54:33,846 | INFO     | executing command: cat /etc/os-release
[2026-01-10 12:55:05] 2026-01-10 17:54:33,901 | INFO     | cat /etc/os-release:
[2026-01-10 12:55:05] NAME="CentOS Linux"
[2026-01-10 12:55:05] VERSION="7 (Core)"
[2026-01-10 12:55:05] ID="centos"
[2026-01-10 12:55:05] ID_LIKE="rhel fedora"
[2026-01-10 12:55:05] VERSION_ID="7"
[2026-01-10 12:55:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 12:55:05] ANSI_COLOR="0;31"
[2026-01-10 12:55:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 12:55:05] HOME_URL="https://www.centos.org/"
[2026-01-10 12:55:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 12:55:05] 
[2026-01-10 12:55:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 12:55:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 12:55:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 12:55:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 12:55:05] 
[2026-01-10 12:55:05] 2026-01-10 17:54:33,901 | INFO     | ***************************************
[2026-01-10 12:55:05] 2026-01-10 17:54:34,405 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 12:55:05] 2026-01-10 17:54:34,484 | INFO     | sufficient remaining disk space (75464966144 B)
[2026-01-10 12:55:05] 2026-01-10 17:54:34,485 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 12:55:05] 2026-01-10 17:54:34,485 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 12:55:05] 2026-01-10 17:54:34,485 | INFO     | update_server=False
[2026-01-10 12:55:05] 2026-01-10 17:54:34,485 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 12:55:05] 2026-01-10 17:54:34,557 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:55:05] 2026-01-10 17:54:34,557 | INFO     | aborting loop
[2026-01-10 12:55:05] 2026-01-10 17:54:35,048 | INFO     | all payload control threads have been joined
[2026-01-10 12:55:05] 2026-01-10 17:54:35,179 | INFO     | all data control threads have been joined
[2026-01-10 12:55:05] 2026-01-10 17:54:35,287 | INFO     | all job control threads have been joined
[2026-01-10 12:55:05] 2026-01-10 17:54:35,491 | INFO     | [job] retrieve thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:35,513 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:35,544 | INFO     | [payload] failed_post thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:35,563 | INFO     | [job] job monitor thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:35,608 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:35,647 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 12:55:05] 2026-01-10 17:54:35,965 | INFO     | [data] copytool_in thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:36,050 | INFO     | [payload] validate_post thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:36,054 | INFO     | [payload] control thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:36,185 | INFO     | [data] control thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:36,294 | INFO     | [job] control thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:36,425 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:36,449 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:36,722 | INFO     | [job] validate thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:37,026 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:55:05] 2026-01-10 17:54:37,654 | INFO     | [data] copytool_out thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:37,849 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 12:55:05] 2026-01-10 17:54:38,032 | INFO     | [job] queue monitor thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:41,858 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 12:55:05] 2026-01-10 17:54:57,767 | INFO     | [monitor] cgroup control has ended
[2026-01-10 12:55:05] 2026-01-10 17:54:58,464 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140380694669120)>', '<ExcThread(monitor, started 140380326586112)>']
[2026-01-10 12:55:05] 2026-01-10 17:55:03,490 | INFO     | all workflow threads have been joined
[2026-01-10 12:55:05] 2026-01-10 17:55:03,490 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 12:55:05] 2026-01-10 17:55:03,490 | INFO     | traces error code: 0
[2026-01-10 12:55:05] 2026-01-10 17:55:03,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 12:55:05] 2026-01-10 17:55:04,173 | INFO     | PID=4175696 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 12:55:05] 2026-01-10 17:55:04,174 | INFO     | .. there are 12 such processes running
[2026-01-10 12:55:05] 2026-01-10 17:55:04,179 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 12:55:05] 2026-01-10 17:55:04,179 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 12:55:05] 2026-01-10 17:55:04,179 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 12:55:05] 2026-01-10 17:55:04,179 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 12:55:05] 2026-01-10 17:55:04,179 | INFO     | [monitor] control thread has ended
[2026-01-10 12:55:05] 2026-01-10 17:55:04,407 [wrapper] ==== pilot stdout END ====
[2026-01-10 12:55:05] 2026-01-10 17:55:04,468 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 12:55:05] 2026-01-10 17:55:04,512 [wrapper] pilotpid: 4175696
[2026-01-10 12:55:05] 2026-01-10 17:55:04,559 [wrapper] Pilot exit status: 0
[2026-01-10 12:55:05] 2026-01-10 17:55:04,707 [wrapper] pandaids: 6965382680
[2026-01-10 12:55:05] 2026-01-10 17:55:04,922 [wrapper] cleanup supervisor_pilot  728022 4175697
[2026-01-10 12:55:05] 2026-01-10 17:55:04,941 [wrapper] Test setup, not cleaning
[2026-01-10 12:55:05] 2026-01-10 17:55:05,034 [wrapper] apfmon messages muted
[2026-01-10 12:55:05] 2026-01-10 17:55:05,044 [wrapper] ==== wrapper stdout END ====
[2026-01-10 12:55:05] 2026-01-10 17:55:05,084 [wrapper] ==== wrapper stderr END ====
[2026-01-10 12:55:05]  *** Error codes and diagnostics ***
[2026-01-10 12:55:05]     "exeErrorCode": 0,
[2026-01-10 12:55:05]     "exeErrorDiag": "",
[2026-01-10 12:55:05]     "pilotErrorCode": 0,
[2026-01-10 12:55:05]     "pilotErrorDiag": "",
[2026-01-10 12:55:05]  *** Listing of results directory ***
[2026-01-10 12:55:05] total 442260
[2026-01-10 12:55:05] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:09 queuedata.json
[2026-01-10 12:55:05] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:09 pilot3.tar.gz
[2026-01-10 12:55:05] -rwx------. 1 boincer umatlas     36322 Jan 10 08:10 runpilot2-wrapper.sh
[2026-01-10 12:55:05] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 12:55:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:10 run_atlas
[2026-01-10 12:55:05] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:10 job.xml
[2026-01-10 12:55:05] -rw-r--r--. 2 boincer umatlas 224608796 Jan 10 08:10 EVNT.47898824._001016.pool.root.1
[2026-01-10 12:55:05] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:10 start_atlas.sh
[2026-01-10 12:55:05] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:10 shared
[2026-01-10 12:55:05] -rw-r--r--. 2 boincer umatlas    592410 Jan 10 08:10 input.tar.gz
[2026-01-10 12:55:05] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:10 boinc_lockfile
[2026-01-10 12:55:05] -rw-r--r--. 1 boincer umatlas      2518 Jan 10 08:10 pandaJob.out
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas        57 Jan 10 08:10 setup.sh.local
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas    989556 Jan 10 08:12 agis_schedconf.cvmfs.json
[2026-01-10 12:55:05] drwx------. 5 boincer umatlas      4096 Jan 10 08:12 pilot3
[2026-01-10 12:55:05] -rw-r--r--. 1 boincer umatlas      6844 Jan 10 12:45 init_data.xml
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas 219069631 Jan 10 12:53 HITS.47898826._040256.pool.root.1
[2026-01-10 12:55:05] -rw-r--r--. 1 boincer umatlas       531 Jan 10 12:53 boinc_task_state.xml
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas      1042 Jan 10 12:53 memory_monitor_summary.json
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas   1516240 Jan 10 12:53 agis_ddmendpoints.agis.ALL.json
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas    484793 Jan 10 12:53 log.47898826._040256.job.log.tgz.1
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas      7827 Jan 10 12:54 heartbeat.json
[2026-01-10 12:55:05] -rw-r--r--. 1 boincer umatlas        28 Jan 10 12:54 wrapper_checkpoint.txt
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas        95 Jan 10 12:55 pilot_heartbeat.json
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas       823 Jan 10 12:55 pilotlog.txt
[2026-01-10 12:55:05] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 12:55 boinc_mmap_file
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas   2157566 Jan 10 12:55 log.47898826._040256.job.log.1
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas       357 Jan 10 12:55 output.list
[2026-01-10 12:55:05] -rw-r--r--. 1 boincer umatlas       620 Jan 10 12:55 runtime_log
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas   2662400 Jan 10 12:55 result.tar.gz
[2026-01-10 12:55:05] -rw-r--r--. 1 boincer umatlas      9353 Jan 10 12:55 runtime_log.err
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas       658 Jan 10 12:55 6l0MDmTuny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7ThKDmBprx5n.diag
[2026-01-10 12:55:05] -rw-r--r--. 1 boincer umatlas     21540 Jan 10 12:55 stderr.txt
[2026-01-10 12:55:05] HITS file was successfully produced:
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas 219069631 Jan 10 12:53 shared/HITS.pool.root.1
[2026-01-10 12:55:05]  *** Contents of shared directory: ***
[2026-01-10 12:55:05] total 436484
[2026-01-10 12:55:05] -rw-r--r--. 2 boincer umatlas 224608796 Jan 10 08:10 ATLAS.root_0
[2026-01-10 12:55:05] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:10 start_atlas.sh
[2026-01-10 12:55:05] -rw-r--r--. 2 boincer umatlas    592410 Jan 10 08:10 input.tar.gz
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas 219069631 Jan 10 12:53 HITS.pool.root.1
[2026-01-10 12:55:05] -rw-------. 1 boincer umatlas   2662400 Jan 10 12:55 result.tar.gz
12:55:26 (4166312): run_atlas exited; CPU time 53737.677685
12:55:26 (4166312): called boinc_finish(0)

</stderr_txt>
]]>

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