Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:05:03 (31014): wrapper (7.7.26015): starting
07:05:03 (31014): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 07:05:03] Arguments: --nthreads 12
[2026-01-10 07:05:03] Threads: 12
[2026-01-10 07:05:03] Checking for CVMFS
[2026-01-10 07:05:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 07:05:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 07:05:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 07:05:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 07:05:04] 2.11.2.0 2998 352412 98588 154979 4 1 14543944 20275200 1 130560 1 148160976 99.952 21006738 16663 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 07:05:04] CVMFS is ok
[2026-01-10 07:05:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 07:05:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 07:05:04] Further information can be found at the LHC@home message board.
[2026-01-10 07:05:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 07:05:04] Checking for apptainer binary...
[2026-01-10 07:05:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 07:05:04] Running /usr/bin/apptainer --version
[2026-01-10 07:05:04] apptainer version 1.3.2-1.el7
[2026-01-10 07:05:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 07:05:05] c-205-25.aglt2.org
[2026-01-10 07:05:05] apptainer works
[2026-01-10 07:05:05] Set ATHENA_PROC_NUMBER=12
[2026-01-10 07:05:05] Set ATHENA_CORE_NUMBER=12
[2026-01-10 07:05:05] Starting ATLAS job with PandaID=6963194213
[2026-01-10 07:05:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 11:02:51]  *** The last 200 lines of the pilot log: ***
[2026-01-10 11:02:51] 2026-01-10 16:02:16,906 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:02:51] 2026-01-10 16:02:17,512 | INFO     | time since job start (14217s) is within the limit (349056.0s)
[2026-01-10 11:02:51] 2026-01-10 16:02:18,545 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-10 11:02:51] 2026-01-10 16:02:18,553 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1784.5833333333333
[2026-01-10 11:02:51] 2026-01-10 16:02:18,556 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963194213/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 11:02:51] 2026-01-10 16:02:18,556 | INFO     | extracted standard info from prmon json
[2026-01-10 11:02:51] 2026-01-10 16:02:18,557 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 11:02:51] 2026-01-10 16:02:18,557 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 11:02:51] 2026-01-10 16:02:18,561 | INFO     | fitting pss+swap vs Time
[2026-01-10 11:02:51] 2026-01-10 16:02:18,562 | INFO     | sum of square deviations: 3922254278.3261733
[2026-01-10 11:02:51] 2026-01-10 16:02:18,563 | INFO     | sum of deviations: 95792708823.455
[2026-01-10 11:02:51] 2026-01-10 16:02:18,564 | INFO     | mean x: 1768053826.141631
[2026-01-10 11:02:51] 2026-01-10 16:02:18,564 | INFO     | mean y: 3208882.592274678
[2026-01-10 11:02:51] 2026-01-10 16:02:18,564 | INFO     | intersect: -43177740982.814766
[2026-01-10 11:02:51] 2026-01-10 16:02:18,564 | INFO     | chi2: 6.134104022864722
[2026-01-10 11:02:51] 2026-01-10 16:02:18,565 | INFO     | sum of square deviations: 3675134128.2236805
[2026-01-10 11:02:51] 2026-01-10 16:02:18,566 | INFO     | sum of deviations: 176118682793.68414
[2026-01-10 11:02:51] 2026-01-10 16:02:18,566 | INFO     | mean x: 1768053673.6447368
[2026-01-10 11:02:51] 2026-01-10 16:02:18,566 | INFO     | mean y: 3258321.403508772
[2026-01-10 11:02:51] 2026-01-10 16:02:18,566 | INFO     | intersect: -84724883086.9618
[2026-01-10 11:02:51] 2026-01-10 16:02:18,567 | INFO     | chi2: 3.1598368260506136
[2026-01-10 11:02:51] 2026-01-10 16:02:18,567 | INFO     | current chi2=3.1598368260506136 (change=48.48739417733381 %)
[2026-01-10 11:02:51] 2026-01-10 16:02:18,567 | INFO     | sum of square deviations: 3438618828.1165996
[2026-01-10 11:02:51] 2026-01-10 16:02:18,568 | INFO     | sum of deviations: 192432213633.9596
[2026-01-10 11:02:51] 2026-01-10 16:02:18,569 | INFO     | mean x: 1768053521.1479821
[2026-01-10 11:02:51] 2026-01-10 16:02:18,569 | INFO     | mean y: 3268689.9103139015
[2026-01-10 11:02:51] 2026-01-10 16:02:18,569 | INFO     | intersect: -98940659062.66762
[2026-01-10 11:02:51] 2026-01-10 16:02:18,569 | INFO     | chi2: 2.8150701745815456
[2026-01-10 11:02:51] 2026-01-10 16:02:18,569 | INFO     | current chi2=2.8150701745815456 (change=10.910900481528394 %)
[2026-01-10 11:02:51] 2026-01-10 16:02:18,569 | INFO     | right removable region: 222
[2026-01-10 11:02:51] 2026-01-10 16:02:18,570 | INFO     | sum of square deviations: 3675113998.2236805
[2026-01-10 11:02:51] 2026-01-10 16:02:18,571 | INFO     | sum of deviations: 18904504172.828888
[2026-01-10 11:02:51] 2026-01-10 16:02:18,571 | INFO     | mean x: 1768053978.6447368
[2026-01-10 11:02:51] 2026-01-10 16:02:18,571 | INFO     | mean y: 3256092.5657894737
[2026-01-10 11:02:51] 2026-01-10 16:02:18,572 | INFO     | intersect: -9091477794.119438
[2026-01-10 11:02:51] 2026-01-10 16:02:18,572 | INFO     | chi2: 3.5034535297649594
[2026-01-10 11:02:51] 2026-01-10 16:02:18,572 | INFO     | current chi2=3.5034535297649594 (change=42.88565181311041 %)
[2026-01-10 11:02:51] 2026-01-10 16:02:18,572 | INFO     | sum of square deviations: 3438592231.4080644
[2026-01-10 11:02:51] 2026-01-10 16:02:18,574 | INFO     | sum of deviations: 2387422700.300497
[2026-01-10 11:02:51] 2026-01-10 16:02:18,574 | INFO     | mean x: 1768054131.1434977
[2026-01-10 11:02:51] 2026-01-10 16:02:18,574 | INFO     | mean y: 3266737.8968609865
[2026-01-10 11:02:51] 2026-01-10 16:02:18,574 | INFO     | intersect: -1224297417.4271243
[2026-01-10 11:02:51] 2026-01-10 16:02:18,574 | INFO     | chi2: 3.436990330267128
[2026-01-10 11:02:51] 2026-01-10 16:02:18,574 | INFO     | current chi2=3.436990330267128 (change=1.8970766682979294 %)
[2026-01-10 11:02:51] 2026-01-10 16:02:18,575 | INFO     | left removable region: 20
[2026-01-10 11:02:51] 2026-01-10 16:02:18,575 | INFO     | sum of square deviations: 2555756889.7425885
[2026-01-10 11:02:51] 2026-01-10 16:02:18,576 | INFO     | sum of deviations: 75288326646.1089
[2026-01-10 11:02:51] 2026-01-10 16:02:18,576 | INFO     | mean x: 1768054100.6534653
[2026-01-10 11:02:51] 2026-01-10 16:02:18,576 | INFO     | mean y: 3348467.415841584
[2026-01-10 11:02:51] 2026-01-10 16:02:18,576 | INFO     | intersect: -52080570465.65506
[2026-01-10 11:02:51] 2026-01-10 16:02:18,577 | INFO     | chi2: 0.011986845142567783
[2026-01-10 11:02:51] 2026-01-10 16:02:18,577 | INFO     | current memory leak: 29.46 B/s (using 202 data points, chi2=0.01)
[2026-01-10 11:02:51] 2026-01-10 16:02:18,577 | INFO     | could have reported an average CPU frequency of 2302 MHz (11 samples)
[2026-01-10 11:02:51] 2026-01-10 16:02:18,577 | INFO     | ..............................
[2026-01-10 11:02:51] 2026-01-10 16:02:18,578 | INFO     | . Timing measurements:
[2026-01-10 11:02:51] 2026-01-10 16:02:18,578 | INFO     | . get job = 0 s
[2026-01-10 11:02:51] 2026-01-10 16:02:18,578 | INFO     | . initial setup = 2 s
[2026-01-10 11:02:51] 2026-01-10 16:02:18,578 | INFO     | . payload setup = 7 s
[2026-01-10 11:02:51] 2026-01-10 16:02:18,578 | INFO     | . stage-in = 0 s
[2026-01-10 11:02:51] 2026-01-10 16:02:18,578 | INFO     | . payload execution = 14182 s
[2026-01-10 11:02:51] 2026-01-10 16:02:18,578 | INFO     | . stage-out = 2 s
[2026-01-10 11:02:51] 2026-01-10 16:02:18,578 | INFO     | . log creation = 0 s
[2026-01-10 11:02:51] 2026-01-10 16:02:18,579 | INFO     | ..............................
[2026-01-10 11:02:51] 2026-01-10 16:02:18,748 | INFO     | PID=3506 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 11:02:51] 2026-01-10 16:02:18,816 | INFO     | 
[2026-01-10 11:02:51] 2026-01-10 16:02:18,817 | INFO     | job summary report
[2026-01-10 11:02:51] 2026-01-10 16:02:18,817 | INFO     | --------------------------------------------------
[2026-01-10 11:02:51] 2026-01-10 16:02:18,817 | INFO     | PanDA job id: 6963194213
[2026-01-10 11:02:51] 2026-01-10 16:02:18,817 | INFO     | task id: 47962010
[2026-01-10 11:02:51] 2026-01-10 16:02:18,817 | INFO     | errors: (none)
[2026-01-10 11:02:51] 2026-01-10 16:02:18,817 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 11:02:51] 2026-01-10 16:02:18,818 | INFO     | pilot state: finished 
[2026-01-10 11:02:51] 2026-01-10 16:02:18,818 | INFO     | transexitcode: 0
[2026-01-10 11:02:51] 2026-01-10 16:02:18,818 | INFO     | exeerrorcode: 0
[2026-01-10 11:02:51] 2026-01-10 16:02:18,818 | INFO     | exeerrordiag: 
[2026-01-10 11:02:51] 2026-01-10 16:02:18,818 | INFO     | exitcode: 0
[2026-01-10 11:02:51] 2026-01-10 16:02:18,818 | INFO     | exitmsg: OK
[2026-01-10 11:02:51] 2026-01-10 16:02:18,819 | INFO     | cpuconsumptiontime: 159783 s
[2026-01-10 11:02:51] 2026-01-10 16:02:18,819 | INFO     | nevents: 450
[2026-01-10 11:02:51] 2026-01-10 16:02:18,819 | INFO     | neventsw: 0
[2026-01-10 11:02:51] 2026-01-10 16:02:18,819 | INFO     | pid: 9875
[2026-01-10 11:02:51] 2026-01-10 16:02:18,819 | INFO     | pgrp: 9875
[2026-01-10 11:02:51] 2026-01-10 16:02:18,819 | INFO     | corecount: 12
[2026-01-10 11:02:51] 2026-01-10 16:02:18,820 | INFO     | event service: False
[2026-01-10 11:02:51] 2026-01-10 16:02:18,820 | INFO     | sizes: {0: 2284449, 1: 2284648, 5: 2284910, 11: 2284966, 14194: 2316704, 14196: 2325882, 14202: 2326072}
[2026-01-10 11:02:51] 2026-01-10 16:02:18,820 | INFO     | --------------------------------------------------
[2026-01-10 11:02:51] 2026-01-10 16:02:18,820 | INFO     | 
[2026-01-10 11:02:51] 2026-01-10 16:02:18,820 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 11:02:51] 2026-01-10 16:02:18,844 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,844 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,844 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,844 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,844 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,845 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,845 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,845 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,845 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,845 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,845 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,846 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,846 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,846 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,846 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,846 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,846 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,847 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 11:02:51] 2026-01-10 16:02:18,847 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,847 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 11:02:51] 2026-01-10 16:02:18,847 | INFO     | job 6963194213 has completed (purged errors)
[2026-01-10 11:02:51] 2026-01-10 16:02:18,847 | INFO     | overall cleanup function is called
[2026-01-10 11:02:51] 2026-01-10 16:02:19,863 | INFO     | --- collectZombieJob: --- 10, [9875]
[2026-01-10 11:02:51] 2026-01-10 16:02:19,863 | INFO     | zombie collector waiting for pid 9875
[2026-01-10 11:02:51] 2026-01-10 16:02:19,864 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 11:02:51] 2026-01-10 16:02:19,864 | INFO     | collected zombie processes
[2026-01-10 11:02:51] 2026-01-10 16:02:19,864 | INFO     | will attempt to kill all subprocesses of pid=9875
[2026-01-10 11:02:51] 2026-01-10 16:02:19,954 | INFO     | process IDs to be killed: [9875] (in reverse order)
[2026-01-10 11:02:51] 2026-01-10 16:02:20,006 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 11:02:51] 2026-01-10 16:02:20,006 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 11:02:51] 2026-01-10 16:02:20,010 | INFO     | did not find any defunct processes belonging to 9875
[2026-01-10 11:02:51] 2026-01-10 16:02:20,013 | INFO     | did not find any defunct processes belonging to 9875
[2026-01-10 11:02:51] 2026-01-10 16:02:20,013 | INFO     | ready for new job
[2026-01-10 11:02:51] 2026-01-10 16:02:20,014 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 11:02:51] 2026-01-10 16:02:20,015 | INFO     | ***************************************
[2026-01-10 11:02:51] 2026-01-10 16:02:20,015 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 11:02:51] 2026-01-10 16:02:20,016 | INFO     | ***************************************
[2026-01-10 11:02:51] 2026-01-10 16:02:20,016 | INFO     | 
[2026-01-10 11:02:51] 2026-01-10 16:02:20,016 | INFO     | architecture information:
[2026-01-10 11:02:51] 2026-01-10 16:02:20,017 | INFO     | executing command: cat /etc/os-release
[2026-01-10 11:02:51] 2026-01-10 16:02:20,031 | INFO     | cat /etc/os-release:
[2026-01-10 11:02:51] NAME="CentOS Linux"
[2026-01-10 11:02:51] VERSION="7 (Core)"
[2026-01-10 11:02:51] ID="centos"
[2026-01-10 11:02:51] ID_LIKE="rhel fedora"
[2026-01-10 11:02:51] VERSION_ID="7"
[2026-01-10 11:02:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 11:02:51] ANSI_COLOR="0;31"
[2026-01-10 11:02:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 11:02:51] HOME_URL="https://www.centos.org/"
[2026-01-10 11:02:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 11:02:51] 
[2026-01-10 11:02:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 11:02:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 11:02:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 11:02:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 11:02:51] 
[2026-01-10 11:02:51] 2026-01-10 16:02:20,031 | INFO     | ***************************************
[2026-01-10 11:02:51] 2026-01-10 16:02:20,534 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 11:02:51] 2026-01-10 16:02:20,550 | INFO     | sufficient remaining disk space (28803334144 B)
[2026-01-10 11:02:51] 2026-01-10 16:02:20,550 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 11:02:51] 2026-01-10 16:02:20,550 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 11:02:51] 2026-01-10 16:02:20,550 | INFO     | update_server=False
[2026-01-10 11:02:51] 2026-01-10 16:02:20,550 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 11:02:51] 2026-01-10 16:02:20,551 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:02:51] 2026-01-10 16:02:20,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:02:51] 2026-01-10 16:02:20,551 | INFO     | aborting loop
[2026-01-10 11:02:51] 2026-01-10 16:02:20,736 | INFO     | all payload control threads have been joined
[2026-01-10 11:02:51] 2026-01-10 16:02:20,826 | INFO     | all data control threads have been joined
[2026-01-10 11:02:51] 2026-01-10 16:02:21,167 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 11:02:51] 2026-01-10 16:02:21,556 | INFO     | [job] retrieve thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:21,557 | INFO     | [job] queue monitor thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:21,557 | INFO     | [job] job monitor thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:21,718 | INFO     | [payload] failed_post thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:21,725 | INFO     | all job control threads have been joined
[2026-01-10 11:02:51] 2026-01-10 16:02:21,741 | INFO     | [payload] control thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:21,831 | INFO     | [data] control thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:21,919 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:21,977 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:21,993 | INFO     | [job] validate thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:22,187 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:22,730 | INFO     | [job] control thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:22,760 | INFO     | [payload] validate_post thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:22,961 | INFO     | [data] copytool_in thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:23,173 | INFO     | [data] copytool_out thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:23,748 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 11:02:51] 2026-01-10 16:02:27,754 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:30,775 | INFO     | job.realtimelogging is not enabled
[2026-01-10 11:02:51] 2026-01-10 16:02:31,780 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 11:02:51] 2026-01-10 16:02:43,350 | INFO     | [monitor] cgroup control has ended
[2026-01-10 11:02:51] 2026-01-10 16:02:44,290 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140513153341248)>', '<ExcThread(monitor, started 140512581371648)>']
[2026-01-10 11:02:51] 2026-01-10 16:02:49,297 | INFO     | all workflow threads have been joined
[2026-01-10 11:02:51] 2026-01-10 16:02:49,297 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 11:02:51] 2026-01-10 16:02:49,298 | INFO     | traces error code: 0
[2026-01-10 11:02:51] 2026-01-10 16:02:49,298 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 11:02:51] 2026-01-10 16:02:50,946 | INFO     | PID=3506 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 11:02:51] 2026-01-10 16:02:50,947 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 11:02:51] 2026-01-10 16:02:50,947 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 11:02:51] 2026-01-10 16:02:50,947 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 11:02:51] 2026-01-10 16:02:50,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 11:02:51] 2026-01-10 16:02:50,947 | CRITICAL | thread 'MainThread' is not alive
[2026-01-10 11:02:51] 2026-01-10 16:02:50,947 | INFO     | [monitor] control thread has ended
[2026-01-10 11:02:51] 2026-01-10 16:02:51,034 [wrapper] ==== pilot stdout END ====
[2026-01-10 11:02:51] 2026-01-10 16:02:51,038 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 11:02:51] 2026-01-10 16:02:51,042 [wrapper] pilotpid: 3506
[2026-01-10 11:02:51] 2026-01-10 16:02:51,046 [wrapper] Pilot exit status: 0
[2026-01-10 11:02:51] 2026-01-10 16:02:51,059 [wrapper] pandaids: 6963194213
[2026-01-10 11:02:51] 2026-01-10 16:02:51,099 [wrapper] cleanup supervisor_pilot 24271 3507
[2026-01-10 11:02:51] 2026-01-10 16:02:51,102 [wrapper] Test setup, not cleaning
[2026-01-10 11:02:51] 2026-01-10 16:02:51,106 [wrapper] apfmon messages muted
[2026-01-10 11:02:51] 2026-01-10 16:02:51,110 [wrapper] ==== wrapper stdout END ====
[2026-01-10 11:02:51] 2026-01-10 16:02:51,114 [wrapper] ==== wrapper stderr END ====
[2026-01-10 11:02:51]  *** Error codes and diagnostics ***
[2026-01-10 11:02:51]     "exeErrorCode": 0,
[2026-01-10 11:02:51]     "exeErrorDiag": "",
[2026-01-10 11:02:51]     "pilotErrorCode": 0,
[2026-01-10 11:02:51]     "pilotErrorDiag": "",
[2026-01-10 11:02:51]  *** Listing of results directory ***
[2026-01-10 11:02:51] total 774388
[2026-01-10 11:02:51] -rw-r--r-- 1 boincer umatlas    579449 Jan  9 02:13 pilot3.tar.gz
[2026-01-10 11:02:51] -rwx------ 1 boincer umatlas     36322 Jan  9 02:13 runpilot2-wrapper.sh
[2026-01-10 11:02:51] -rw-r--r-- 1 boincer umatlas      5112 Jan  9 02:13 queuedata.json
[2026-01-10 11:02:51] -rw-r--r-- 1 boincer umatlas       100 Jan 10 07:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 11:02:51] -rwxr-xr-x 1 boincer umatlas      7986 Jan 10 07:05 run_atlas
[2026-01-10 11:02:51] -rw-r--r-- 1 boincer umatlas       105 Jan 10 07:05 job.xml
[2026-01-10 11:02:51] -rw-r--r-- 2 boincer umatlas 389451780 Jan 10 07:05 EVNT.47962006._000055.pool.root.1
[2026-01-10 11:02:51] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 07:05 start_atlas.sh
[2026-01-10 11:02:51] drwxrwx--x 2 boincer umatlas      4096 Jan 10 07:05 shared
[2026-01-10 11:02:51] -rw-r--r-- 2 boincer umatlas    592607 Jan 10 07:05 input.tar.gz
[2026-01-10 11:02:51] -rw-r--r-- 1 boincer umatlas         0 Jan 10 07:05 boinc_lockfile
[2026-01-10 11:02:51] -rw-r--r-- 1 boincer umatlas      2891 Jan 10 07:05 pandaJob.out
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas        57 Jan 10 07:05 setup.sh.local
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas    989564 Jan 10 07:05 agis_schedconf.cvmfs.json
[2026-01-10 11:02:51] drwx------ 5 boincer umatlas      4096 Jan 10 07:05 pilot3
[2026-01-10 11:02:51] -rw-r--r-- 1 boincer umatlas       533 Jan 10 10:52 boinc_task_state.xml
[2026-01-10 11:02:51] -rw-r--r-- 1 boincer umatlas      5954 Jan 10 11:00 init_data.xml
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas 391832119 Jan 10 11:01 HITS.47962010._000552.pool.root.1
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas        95 Jan 10 11:02 pilot_heartbeat.json
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas      1058 Jan 10 11:02 memory_monitor_summary.json
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas   1516240 Jan 10 11:02 agis_ddmendpoints.agis.ALL.json
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas   1873469 Jan 10 11:02 log.47962010._000552.job.log.tgz.1
[2026-01-10 11:02:51] -rw-r--r-- 1 boincer umatlas      8192 Jan 10 11:02 boinc_mmap_file
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas      8652 Jan 10 11:02 heartbeat.json
[2026-01-10 11:02:51] -rw-r--r-- 1 boincer umatlas        29 Jan 10 11:02 wrapper_checkpoint.txt
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas       814 Jan 10 11:02 pilotlog.txt
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas   2012579 Jan 10 11:02 log.47962010._000552.job.log.1
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas       353 Jan 10 11:02 output.list
[2026-01-10 11:02:51] -rw-r--r-- 1 boincer umatlas       620 Jan 10 11:02 runtime_log
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas   3901440 Jan 10 11:02 result.tar.gz
[2026-01-10 11:02:51] -rw-r--r-- 1 boincer umatlas      9345 Jan 10 11:02 runtime_log.err
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas       669 Jan 10 11:02 5upNDm3rLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbQmKDmT5tyVm.diag
[2026-01-10 11:02:51] -rw-r--r-- 1 boincer umatlas     21256 Jan 10 11:02 stderr.txt
[2026-01-10 11:02:51] HITS file was successfully produced:
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas 391832119 Jan 10 11:01 shared/HITS.pool.root.1
[2026-01-10 11:02:51]  *** Contents of shared directory: ***
[2026-01-10 11:02:51] total 767392
[2026-01-10 11:02:51] -rw-r--r-- 2 boincer umatlas 389451780 Jan 10 07:05 ATLAS.root_0
[2026-01-10 11:02:51] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 07:05 start_atlas.sh
[2026-01-10 11:02:51] -rw-r--r-- 2 boincer umatlas    592607 Jan 10 07:05 input.tar.gz
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas 391832119 Jan 10 11:01 HITS.pool.root.1
[2026-01-10 11:02:51] -rw------- 1 boincer umatlas   3901440 Jan 10 11:02 result.tar.gz
11:02:52 (31014): run_atlas exited; CPU time 156804.062971
11:02:52 (31014): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN