Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:56:07 (26712): wrapper (7.7.26015): starting
06:56:07 (26712): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 06:56:07] Arguments: --nthreads 12
[2026-01-10 06:56:07] Threads: 12
[2026-01-10 06:56:07] Checking for CVMFS
[2026-01-10 06:56:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 06:56:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 06:56:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 06:56:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 06:56:07] 2.11.2.0 30551 182391 96732 154978 0 1 14081218 20275201 1 130560 0 71765616 99.895 10735120 29734 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 06:56:07] CVMFS is ok
[2026-01-10 06:56:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 06:56:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 06:56:07] Further information can be found at the LHC@home message board.
[2026-01-10 06:56:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 06:56:07] Checking for apptainer binary...
[2026-01-10 06:56:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 06:56:07] Running /usr/bin/apptainer --version
[2026-01-10 06:56:07] apptainer version 1.3.2-1.el7
[2026-01-10 06:56:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 06:56:09] c-205-16.aglt2.org
[2026-01-10 06:56:09] apptainer works
[2026-01-10 06:56:09] Set ATHENA_PROC_NUMBER=12
[2026-01-10 06:56:09] Set ATHENA_CORE_NUMBER=12
[2026-01-10 06:56:09] Starting ATLAS job with PandaID=6963147706
[2026-01-10 06:56:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:45:50 (26786): wrapper (7.7.26015): starting
08:45:50 (26786): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 08:45:50] Arguments: --nthreads 12
[2026-01-10 08:45:50] Threads: 12
[2026-01-10 08:45:50] This job has been restarted, cleaning up previous attempt
[2026-01-10 08:45:50] Checking for CVMFS
[2026-01-10 08:45:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:45:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:45:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:45:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:45:51] 2.11.2.0 30551 182500 96372 154981 3 59 14257810 20275201 1 130560 0 71849324 99.895 10743165 29741 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 08:45:51] CVMFS is ok
[2026-01-10 08:45:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:45:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:45:51] Further information can be found at the LHC@home message board.
[2026-01-10 08:45:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:45:51] Checking for apptainer binary...
[2026-01-10 08:45:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:45:51] Running /usr/bin/apptainer --version
[2026-01-10 08:45:51] apptainer version 1.3.2-1.el7
[2026-01-10 08:45:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:45:53] c-205-16.aglt2.org
[2026-01-10 08:45:53] apptainer works
[2026-01-10 08:45:53] Set ATHENA_PROC_NUMBER=12
[2026-01-10 08:45:53] Set ATHENA_CORE_NUMBER=12
[2026-01-10 08:45:53] Starting ATLAS job with PandaID=6963147706
[2026-01-10 08:45:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 10:29:23]  *** The last 200 lines of the pilot log: ***
[2026-01-10 10:29:23] 2026-01-10 15:28:39,676 | INFO     | time since job start (6152s) is within the limit (349056.0s)
[2026-01-10 10:29:23] 2026-01-10 15:28:39,809 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-10 10:29:23] 2026-01-10 15:28:39,813 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2026-01-10 10:29:23] 2026-01-10 15:28:39,815 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963147706/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:29:23] 2026-01-10 15:28:39,815 | INFO     | extracted standard info from prmon json
[2026-01-10 10:29:23] 2026-01-10 15:28:39,815 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 10:29:23] 2026-01-10 15:28:39,815 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 10:29:23] 2026-01-10 15:28:39,816 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 10:29:23] 2026-01-10 15:28:39,816 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 10:29:23] 2026-01-10 15:28:39,818 | INFO     | fitting pss+swap vs Time
[2026-01-10 10:29:23] 2026-01-10 15:28:39,818 | INFO     | sum of square deviations: 319447850.0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,819 | INFO     | sum of deviations: -480434413.99999714
[2026-01-10 10:29:23] 2026-01-10 15:28:39,819 | INFO     | mean x: 1768055846.0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,819 | INFO     | mean y: 2658007.5346534653
[2026-01-10 10:29:23] 2026-01-10 15:28:39,819 | INFO     | intersect: 2661730135.558928
[2026-01-10 10:29:23] 2026-01-10 15:28:39,819 | INFO     | chi2: 2.364061511405851
[2026-01-10 10:29:23] 2026-01-10 15:28:39,820 | INFO     | sum of square deviations: 274312120.0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,820 | INFO     | sum of deviations: 6645898455.0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,820 | INFO     | mean x: 1768055693.5
[2026-01-10 10:29:23] 2026-01-10 15:28:39,820 | INFO     | mean y: 2681115.4375
[2026-01-10 10:29:23] 2026-01-10 15:28:39,820 | INFO     | intersect: -42832898303.31222
[2026-01-10 10:29:23] 2026-01-10 15:28:39,821 | INFO     | chi2: 1.5935157892985714
[2026-01-10 10:29:23] 2026-01-10 15:28:39,821 | INFO     | current chi2=1.5935157892985714 (change=32.5941486035638 %)
[2026-01-10 10:29:23] 2026-01-10 15:28:39,821 | INFO     | sum of square deviations: 233641590.0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,821 | INFO     | sum of deviations: 6503619432.0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,821 | INFO     | mean x: 1768055541.0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,822 | INFO     | mean y: 2680583.4395604394
[2026-01-10 10:29:23] 2026-01-10 15:28:39,822 | INFO     | intersect: -49212702573.740944
[2026-01-10 10:29:23] 2026-01-10 15:28:39,822 | INFO     | chi2: 1.5973132819630302
[2026-01-10 10:29:23] 2026-01-10 15:28:39,822 | INFO     | current chi2=1.5973132819630302 (change=-0.238309070419089 %)
[2026-01-10 10:29:23] 2026-01-10 15:28:39,822 | INFO     | right removable region: 90
[2026-01-10 10:29:23] 2026-01-10 15:28:39,822 | INFO     | sum of square deviations: 274312120.0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,823 | INFO     | sum of deviations: -16217859824.5
[2026-01-10 10:29:23] 2026-01-10 15:28:39,823 | INFO     | mean x: 1768055998.5
[2026-01-10 10:29:23] 2026-01-10 15:28:39,823 | INFO     | mean y: 2710037.34375
[2026-01-10 10:29:23] 2026-01-10 15:28:39,823 | INFO     | intersect: 104533579273.23236
[2026-01-10 10:29:23] 2026-01-10 15:28:39,823 | INFO     | chi2: 0.9659562304931157
[2026-01-10 10:29:23] 2026-01-10 15:28:39,823 | INFO     | current chi2=0.9659562304931157 (change=59.13997051968904 %)
[2026-01-10 10:29:23] 2026-01-10 15:28:39,824 | INFO     | sum of square deviations: 233641590.0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,824 | INFO     | sum of deviations: -17884952889.0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,824 | INFO     | mean x: 1768056151.0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,824 | INFO     | mean y: 2715972.967032967
[2026-01-10 10:29:23] 2026-01-10 15:28:39,824 | INFO     | intersect: 135345062195.4083
[2026-01-10 10:29:23] 2026-01-10 15:28:39,825 | INFO     | chi2: 0.8968998541865237
[2026-01-10 10:29:23] 2026-01-10 15:28:39,825 | INFO     | current chi2=0.8968998541865237 (change=7.149017121752927 %)
[2026-01-10 10:29:23] 2026-01-10 15:28:39,825 | INFO     | left removable region: 20
[2026-01-10 10:29:23] 2026-01-10 15:28:39,825 | INFO     | sum of square deviations: 106336877.5
[2026-01-10 10:29:23] 2026-01-10 15:28:39,825 | INFO     | sum of deviations: -5166033880.000001
[2026-01-10 10:29:23] 2026-01-10 15:28:39,825 | INFO     | mean x: 1768056120.5
[2026-01-10 10:29:23] 2026-01-10 15:28:39,826 | INFO     | mean y: 2722191.9714285713
[2026-01-10 10:29:23] 2026-01-10 15:28:39,826 | INFO     | intersect: 85898020558.65862
[2026-01-10 10:29:23] 2026-01-10 15:28:39,826 | INFO     | chi2: 0.06312149543872732
[2026-01-10 10:29:23] 2026-01-10 15:28:39,826 | INFO     | current memory leak: -48.58 B/s (using 70 data points, chi2=0.06)
[2026-01-10 10:29:23] 2026-01-10 15:28:39,826 | INFO     | could have reported an average CPU frequency of 2128 MHz (7 samples)
[2026-01-10 10:29:23] 2026-01-10 15:28:39,827 | INFO     | ..............................
[2026-01-10 10:29:23] 2026-01-10 15:28:39,827 | INFO     | . Timing measurements:
[2026-01-10 10:29:23] 2026-01-10 15:28:39,827 | INFO     | . get job = 0 s
[2026-01-10 10:29:23] 2026-01-10 15:28:39,827 | INFO     | . initial setup = 1 s
[2026-01-10 10:29:23] 2026-01-10 15:28:39,827 | INFO     | . payload setup = 7 s
[2026-01-10 10:29:23] 2026-01-10 15:28:39,827 | INFO     | . stage-in = 0 s
[2026-01-10 10:29:23] 2026-01-10 15:28:39,827 | INFO     | . payload execution = 6115 s
[2026-01-10 10:29:23] 2026-01-10 15:28:39,827 | INFO     | . stage-out = 2 s
[2026-01-10 10:29:23] 2026-01-10 15:28:39,827 | INFO     | . log creation = 0 s
[2026-01-10 10:29:23] 2026-01-10 15:28:39,827 | INFO     | ..............................
[2026-01-10 10:29:23] 2026-01-10 15:28:39,917 | INFO     | 
[2026-01-10 10:29:23] 2026-01-10 15:28:39,917 | INFO     | job summary report
[2026-01-10 10:29:23] 2026-01-10 15:28:39,917 | INFO     | --------------------------------------------------
[2026-01-10 10:29:23] 2026-01-10 15:28:39,917 | INFO     | PanDA job id: 6963147706
[2026-01-10 10:29:23] 2026-01-10 15:28:39,918 | INFO     | task id: 47898826
[2026-01-10 10:29:23] 2026-01-10 15:28:39,918 | INFO     | errors: (none)
[2026-01-10 10:29:23] 2026-01-10 15:28:39,918 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 10:29:23] 2026-01-10 15:28:39,918 | INFO     | pilot state: finished 
[2026-01-10 10:29:23] 2026-01-10 15:28:39,918 | INFO     | transexitcode: 0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,918 | INFO     | exeerrorcode: 0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,919 | INFO     | exeerrordiag: 
[2026-01-10 10:29:23] 2026-01-10 15:28:39,919 | INFO     | exitcode: 0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,919 | INFO     | exitmsg: OK
[2026-01-10 10:29:23] 2026-01-10 15:28:39,919 | INFO     | cpuconsumptiontime: 66430 s
[2026-01-10 10:29:23] 2026-01-10 15:28:39,919 | INFO     | nevents: 400
[2026-01-10 10:29:23] 2026-01-10 15:28:39,919 | INFO     | neventsw: 0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,920 | INFO     | pid: 5094
[2026-01-10 10:29:23] 2026-01-10 15:28:39,920 | INFO     | pgrp: 5094
[2026-01-10 10:29:23] 2026-01-10 15:28:39,920 | INFO     | corecount: 12
[2026-01-10 10:29:23] 2026-01-10 15:28:39,920 | INFO     | event service: False
[2026-01-10 10:29:23] 2026-01-10 15:28:39,920 | INFO     | sizes: {0: 2283795, 1: 2283994, 6: 2284256, 11: 2284284, 6126: 2311062, 6127: 2311061, 6129: 2320299, 6136: 2320437}
[2026-01-10 10:29:23] 2026-01-10 15:28:39,920 | INFO     | --------------------------------------------------
[2026-01-10 10:29:23] 2026-01-10 15:28:39,920 | INFO     | 
[2026-01-10 10:29:23] 2026-01-10 15:28:39,921 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 10:29:23] 2026-01-10 15:28:39,944 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,945 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,945 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,945 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,945 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,945 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,945 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,946 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,946 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,946 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,946 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,947 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,947 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,947 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,947 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,947 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 10:29:23] 2026-01-10 15:28:39,947 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,948 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 10:29:23] 2026-01-10 15:28:39,948 | INFO     | job 6963147706 has completed (purged errors)
[2026-01-10 10:29:23] 2026-01-10 15:28:39,948 | INFO     | overall cleanup function is called
[2026-01-10 10:29:23] 2026-01-10 15:28:40,956 | INFO     | --- collectZombieJob: --- 10, [5094]
[2026-01-10 10:29:23] 2026-01-10 15:28:40,957 | INFO     | zombie collector waiting for pid 5094
[2026-01-10 10:29:23] 2026-01-10 15:28:40,957 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 10:29:23] 2026-01-10 15:28:40,957 | INFO     | collected zombie processes
[2026-01-10 10:29:23] 2026-01-10 15:28:40,957 | INFO     | will attempt to kill all subprocesses of pid=5094
[2026-01-10 10:29:23] 2026-01-10 15:28:41,050 | INFO     | process IDs to be killed: [5094] (in reverse order)
[2026-01-10 10:29:23] 2026-01-10 15:28:41,102 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 10:29:23] 2026-01-10 15:28:41,102 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 10:29:23] 2026-01-10 15:28:41,105 | INFO     | did not find any defunct processes belonging to 5094
[2026-01-10 10:29:23] 2026-01-10 15:28:41,107 | INFO     | did not find any defunct processes belonging to 5094
[2026-01-10 10:29:23] 2026-01-10 15:28:41,108 | INFO     | ready for new job
[2026-01-10 10:29:23] 2026-01-10 15:28:41,108 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 10:29:23] 2026-01-10 15:28:41,110 | INFO     | ***************************************
[2026-01-10 10:29:23] 2026-01-10 15:28:41,110 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 10:29:23] 2026-01-10 15:28:41,110 | INFO     | ***************************************
[2026-01-10 10:29:23] 2026-01-10 15:28:41,110 | INFO     | 
[2026-01-10 10:29:23] 2026-01-10 15:28:41,111 | INFO     | architecture information:
[2026-01-10 10:29:23] 2026-01-10 15:28:41,111 | INFO     | executing command: cat /etc/os-release
[2026-01-10 10:29:23] 2026-01-10 15:28:41,126 | INFO     | cat /etc/os-release:
[2026-01-10 10:29:23] NAME="CentOS Linux"
[2026-01-10 10:29:23] VERSION="7 (Core)"
[2026-01-10 10:29:23] ID="centos"
[2026-01-10 10:29:23] ID_LIKE="rhel fedora"
[2026-01-10 10:29:23] VERSION_ID="7"
[2026-01-10 10:29:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 10:29:23] ANSI_COLOR="0;31"
[2026-01-10 10:29:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 10:29:23] HOME_URL="https://www.centos.org/"
[2026-01-10 10:29:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 10:29:23] 
[2026-01-10 10:29:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 10:29:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 10:29:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 10:29:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 10:29:23] 
[2026-01-10 10:29:23] 2026-01-10 15:28:41,126 | INFO     | ***************************************
[2026-01-10 10:29:23] 2026-01-10 15:28:41,630 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 10:29:23] 2026-01-10 15:28:41,647 | INFO     | sufficient remaining disk space (29455548416 B)
[2026-01-10 10:29:23] 2026-01-10 15:28:41,647 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 10:29:23] 2026-01-10 15:28:41,647 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 10:29:23] 2026-01-10 15:28:41,647 | INFO     | update_server=False
[2026-01-10 10:29:23] 2026-01-10 15:28:41,648 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 10:29:23] 2026-01-10 15:28:41,648 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 10:29:23] 2026-01-10 15:28:41,648 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 10:29:23] 2026-01-10 15:28:41,648 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 10:29:23] 2026-01-10 15:28:41,648 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 10:29:23] 2026-01-10 15:28:41,649 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 10:29:23] 2026-01-10 15:28:41,649 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:29:23] 2026-01-10 15:28:41,683 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 10:29:23] 2026-01-10 15:28:41,683 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 10:29:23] 2026-01-10 15:28:41,684 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:29:23] 2026-01-10 15:28:41,684 | INFO     | will abort loop
[2026-01-10 10:29:23] 2026-01-10 15:28:42,046 | INFO     | all payload control threads have been joined
[2026-01-10 10:29:23] 2026-01-10 15:28:42,524 | INFO     | all data control threads have been joined
[2026-01-10 10:29:23] 2026-01-10 15:28:42,653 | INFO     | [job] retrieve thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:28:42,655 | INFO     | [job] queue monitor thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:28:42,689 | INFO     | [job] job monitor thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:28:42,738 | INFO     | all job control threads have been joined
[2026-01-10 10:29:23] 2026-01-10 15:28:42,778 | INFO     | [data] copytool_in thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:28:42,823 | INFO     | [payload] validate_post thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:28:43,051 | INFO     | [payload] control thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:28:43,205 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:28:43,461 | INFO     | [job] validate thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:28:43,530 | INFO     | [data] control thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:28:43,655 | INFO     | [data] copytool_out thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:28:43,685 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 10:29:23] 2026-01-10 15:28:43,743 | INFO     | [job] control thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:28:43,844 | INFO     | [payload] failed_post thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:28:43,969 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:28:43,983 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:28:44,094 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:28:47,691 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 10:29:23] 2026-01-10 15:29:17,283 | INFO     | [monitor] cgroup control has ended
[2026-01-10 10:29:23] 2026-01-10 15:29:18,289 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139912541243200)>', '<ExcThread(monitor, started 139911940253440)>']
[2026-01-10 10:29:23] 2026-01-10 15:29:18,828 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 10:29:23] 2026-01-10 15:29:18,828 | INFO     | [monitor] control thread has ended
[2026-01-10 10:29:23] 2026-01-10 15:29:23,308 | INFO     | all workflow threads have been joined
[2026-01-10 10:29:23] 2026-01-10 15:29:23,308 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 10:29:23] 2026-01-10 15:29:23,308 | INFO     | traces error code: 0
[2026-01-10 10:29:23] 2026-01-10 15:29:23,309 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 10:29:23] 2026-01-10 15:29:23,404 [wrapper] ==== pilot stdout END ====
[2026-01-10 10:29:23] 2026-01-10 15:29:23,408 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 10:29:23] 2026-01-10 15:29:23,412 [wrapper] pilotpid: 31024
[2026-01-10 10:29:23] 2026-01-10 15:29:23,415 [wrapper] Pilot exit status: 0
[2026-01-10 10:29:23] 2026-01-10 15:29:23,431 [wrapper] pandaids: 6963147706 6963147706
[2026-01-10 10:29:23] 2026-01-10 15:29:23,478 [wrapper] cleanup supervisor_pilot 16482 31025
[2026-01-10 10:29:23] 2026-01-10 15:29:23,482 [wrapper] Test setup, not cleaning
[2026-01-10 10:29:23] 2026-01-10 15:29:23,486 [wrapper] apfmon messages muted
[2026-01-10 10:29:23] 2026-01-10 15:29:23,489 [wrapper] ==== wrapper stdout END ====
[2026-01-10 10:29:23] 2026-01-10 15:29:23,493 [wrapper] ==== wrapper stderr END ====
[2026-01-10 10:29:23]  *** Error codes and diagnostics ***
[2026-01-10 10:29:23]     "exeErrorCode": 0,
[2026-01-10 10:29:23]     "exeErrorDiag": "",
[2026-01-10 10:29:23]     "pilotErrorCode": 0,
[2026-01-10 10:29:23]     "pilotErrorDiag": "",
[2026-01-10 10:29:23]  *** Listing of results directory ***
[2026-01-10 10:29:23] total 653748
[2026-01-10 10:29:23] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-10 10:29:23] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 11:02 queuedata.json
[2026-01-10 10:29:23] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-10 10:29:23] -rwx------ 1 boincer umatlas     36322 Jan  8 11:03 runpilot2-wrapper.sh
[2026-01-10 10:29:23] -rw-r--r-- 1 boincer umatlas       100 Jan 10 06:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 10:29:23] -rwxr-xr-x 1 boincer umatlas      7986 Jan 10 06:56 run_atlas
[2026-01-10 10:29:23] -rw-r--r-- 1 boincer umatlas       105 Jan 10 06:56 job.xml
[2026-01-10 10:29:23] -rw-r--r-- 3 boincer umatlas 222465004 Jan 10 06:56 EVNT.47898824._000825.pool.root.1
[2026-01-10 10:29:23] -rw-r--r-- 3 boincer umatlas 222465004 Jan 10 06:56 ATLAS.root_0
[2026-01-10 10:29:23] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 06:56 start_atlas.sh
[2026-01-10 10:29:23] drwxrwx--x 2 boincer umatlas      4096 Jan 10 06:56 shared
[2026-01-10 10:29:23] -rw-r--r-- 2 boincer umatlas    592395 Jan 10 06:56 input.tar.gz
[2026-01-10 10:29:23] -rw-r--r-- 1 boincer umatlas         0 Jan 10 06:56 boinc_lockfile
[2026-01-10 10:29:23] -rw-r--r-- 1 boincer umatlas      2517 Jan 10 08:45 pandaJob.out
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas        57 Jan 10 08:45 setup.sh.local
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas    989556 Jan 10 08:46 agis_schedconf.cvmfs.json
[2026-01-10 10:29:23] -rw-r--r-- 1 boincer umatlas      5955 Jan 10 10:27 init_data.xml
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas 218069489 Jan 10 10:27 HITS.47898826._027824.pool.root.1
[2026-01-10 10:29:23] -rw-r--r-- 1 boincer umatlas       532 Jan 10 10:28 boinc_task_state.xml
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas      1046 Jan 10 10:28 memory_monitor_summary.json
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas   1516240 Jan 10 10:28 agis_ddmendpoints.agis.ALL.json
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas        96 Jan 10 10:28 pilot_heartbeat.json
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas    390933 Jan 10 10:28 log.47898826._027824.job.log.tgz.1
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas      7849 Jan 10 10:28 heartbeat.json
[2026-01-10 10:29:23] -rw-r--r-- 1 boincer umatlas        29 Jan 10 10:29 wrapper_checkpoint.txt
[2026-01-10 10:29:23] -rw-r--r-- 1 boincer umatlas      8192 Jan 10 10:29 boinc_mmap_file
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas      4738 Jan 10 10:29 pilotlog.txt
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas    873642 Jan 10 10:29 log.47898826._027824.job.log.1
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas       357 Jan 10 10:29 output.list
[2026-01-10 10:29:23] -rw-r--r-- 1 boincer umatlas       620 Jan 10 10:29 runtime_log
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas   1280000 Jan 10 10:29 result.tar.gz
[2026-01-10 10:29:23] -rw-r--r-- 1 boincer umatlas      9429 Jan 10 10:29 runtime_log.err
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas      1287 Jan 10 10:29 m5DODm3e7x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOffKDmi8EwKm.diag
[2026-01-10 10:29:23] -rw-r--r-- 1 boincer umatlas     23117 Jan 10 10:29 stderr.txt
[2026-01-10 10:29:23] HITS file was successfully produced:
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas 218069489 Jan 10 10:27 shared/HITS.pool.root.1
[2026-01-10 10:29:23]  *** Contents of shared directory: ***
[2026-01-10 10:29:23] total 432060
[2026-01-10 10:29:23] -rw-r--r-- 3 boincer umatlas 222465004 Jan 10 06:56 ATLAS.root_0
[2026-01-10 10:29:23] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 06:56 start_atlas.sh
[2026-01-10 10:29:23] -rw-r--r-- 2 boincer umatlas    592395 Jan 10 06:56 input.tar.gz
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas 218069489 Jan 10 10:27 HITS.pool.root.1
[2026-01-10 10:29:23] -rw------- 1 boincer umatlas   1280000 Jan 10 10:29 result.tar.gz
10:29:25 (26786): run_atlas exited; CPU time 66409.946806
10:29:25 (26786): called boinc_finish(0)

</stderr_txt>
]]>

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