Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:53:50 (7643): wrapper (7.7.26015): starting
23:53:50 (7643): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 23:53:50] Arguments: --nthreads 12
[2026-01-09 23:53:50] Threads: 12
[2026-01-09 23:53:50] Checking for CVMFS
[2026-01-09 23:53:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 23:53:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 23:53:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 23:53:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 23:53:51] 2.11.2.0 2991 351981 91920 154968 2 1 18371976 20275201 1 130560 1 149848576 99.947 21677804 16719 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 23:53:51] CVMFS is ok
[2026-01-09 23:53:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 23:53:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 23:53:51] Further information can be found at the LHC@home message board.
[2026-01-09 23:53:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 23:53:51] Checking for apptainer binary...
[2026-01-09 23:53:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 23:53:51] Running /usr/bin/apptainer --version
[2026-01-09 23:53:51] apptainer version 1.3.2-1.el7
[2026-01-09 23:53:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 23:53:52] c-205-32.aglt2.org
[2026-01-09 23:53:52] apptainer works
[2026-01-09 23:53:52] Set ATHENA_PROC_NUMBER=12
[2026-01-09 23:53:52] Set ATHENA_CORE_NUMBER=12
[2026-01-09 23:53:52] Starting ATLAS job with PandaID=6963167627
[2026-01-09 23:53:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 01:40:23]  *** The last 200 lines of the pilot log: ***
[2026-01-10 01:40:23] 2026-01-10 06:39:23,812 | INFO     | executing command: lscpu
[2026-01-10 01:40:23] 2026-01-10 06:39:23,836 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 01:40:23] 2026-01-10 06:39:24,500 | INFO     | time since job start (6317s) is within the limit (349056.0s)
[2026-01-10 01:40:23] 2026-01-10 06:39:24,870 | WARNING  | process 17860 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 01:40:23] 2026-01-10 06:39:24,870 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963167627/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 01:40:23] 2026-01-10 06:39:24,959 | INFO     | number of running child processes to parent process 17860: 1
[2026-01-10 01:40:23] 2026-01-10 06:39:24,959 | INFO     | maximum number of monitored processes: 6
[2026-01-10 01:40:23] 2026-01-10 06:39:26,505 | INFO     | time since job start (6319s) is within the limit (349056.0s)
[2026-01-10 01:40:23] 2026-01-10 06:39:27,462 | INFO     | monitor loop #467: job 0:6963167627 is in state 'finished'
[2026-01-10 01:40:23] 2026-01-10 06:39:27,462 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 01:40:23] 2026-01-10 06:39:28,288 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-10 01:40:23] 2026-01-10 06:39:28,291 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2026-01-10 01:40:23] 2026-01-10 06:39:28,292 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963167627/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 01:40:23] 2026-01-10 06:39:28,293 | INFO     | extracted standard info from prmon json
[2026-01-10 01:40:23] 2026-01-10 06:39:28,293 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 01:40:23] 2026-01-10 06:39:28,293 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 01:40:23] 2026-01-10 06:39:28,293 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 01:40:23] 2026-01-10 06:39:28,293 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 01:40:23] 2026-01-10 06:39:28,295 | INFO     | fitting pss+swap vs Time
[2026-01-10 01:40:23] 2026-01-10 06:39:28,296 | INFO     | sum of square deviations: 338804492.0
[2026-01-10 01:40:23] 2026-01-10 06:39:28,296 | INFO     | sum of deviations: 8583264067.000001
[2026-01-10 01:40:23] 2026-01-10 06:39:28,296 | INFO     | mean x: 1768023986.0
[2026-01-10 01:40:23] 2026-01-10 06:39:28,296 | INFO     | mean y: 2657163.805825243
[2026-01-10 01:40:23] 2026-01-10 06:39:28,296 | INFO     | intersect: -44788415879.66466
[2026-01-10 01:40:23] 2026-01-10 06:39:28,297 | INFO     | chi2: 1.518823659999803
[2026-01-10 01:40:23] 2026-01-10 06:39:28,297 | INFO     | sum of square deviations: 291817564.5
[2026-01-10 01:40:23] 2026-01-10 06:39:28,297 | INFO     | sum of deviations: 8143189174.5
[2026-01-10 01:40:23] 2026-01-10 06:39:28,297 | INFO     | mean x: 1768023833.5
[2026-01-10 01:40:23] 2026-01-10 06:39:28,298 | INFO     | mean y: 2655738.5816326533
[2026-01-10 01:40:23] 2026-01-10 06:39:28,298 | INFO     | intersect: -49334170733.408165
[2026-01-10 01:40:23] 2026-01-10 06:39:28,298 | INFO     | chi2: 1.5221890553964874
[2026-01-10 01:40:23] 2026-01-10 06:39:28,298 | INFO     | current chi2=1.5221890553964874 (change=-0.22157907368158736 %)
[2026-01-10 01:40:23] 2026-01-10 06:39:28,298 | INFO     | right removable region: 97
[2026-01-10 01:40:23] 2026-01-10 06:39:28,298 | INFO     | sum of square deviations: 291817564.5
[2026-01-10 01:40:23] 2026-01-10 06:39:28,299 | INFO     | sum of deviations: -7634252663.000001
[2026-01-10 01:40:23] 2026-01-10 06:39:28,299 | INFO     | mean x: 1768024138.5
[2026-01-10 01:40:23] 2026-01-10 06:39:28,299 | INFO     | mean y: 2708693.6326530613
[2026-01-10 01:40:23] 2026-01-10 06:39:28,299 | INFO     | intersect: 46256069113.244774
[2026-01-10 01:40:23] 2026-01-10 06:39:28,299 | INFO     | chi2: 0.09542117564239297
[2026-01-10 01:40:23] 2026-01-10 06:39:28,299 | INFO     | current chi2=0.09542117564239297 (change=93.71742894481869 %)
[2026-01-10 01:40:23] 2026-01-10 06:39:28,300 | INFO     | sum of square deviations: 249388862.0
[2026-01-10 01:40:23] 2026-01-10 06:39:28,300 | INFO     | sum of deviations: -6599639532.0
[2026-01-10 01:40:23] 2026-01-10 06:39:28,300 | INFO     | mean x: 1768024291.0
[2026-01-10 01:40:23] 2026-01-10 06:39:28,300 | INFO     | mean y: 2704750.4623655914
[2026-01-10 01:40:23] 2026-01-10 06:39:28,300 | INFO     | intersect: 46790371652.8434
[2026-01-10 01:40:23] 2026-01-10 06:39:28,301 | INFO     | chi2: 0.07353686047028458
[2026-01-10 01:40:23] 2026-01-10 06:39:28,301 | INFO     | current chi2=0.07353686047028458 (change=22.93444303612813 %)
[2026-01-10 01:40:23] 2026-01-10 06:39:28,301 | INFO     | left removable region: 20
[2026-01-10 01:40:23] 2026-01-10 06:39:28,301 | INFO     | sum of square deviations: 141539398.0
[2026-01-10 01:40:23] 2026-01-10 06:39:28,301 | INFO     | sum of deviations: -295634060.00000006
[2026-01-10 01:40:23] 2026-01-10 06:39:28,301 | INFO     | mean x: 1768024413.0
[2026-01-10 01:40:23] 2026-01-10 06:39:28,302 | INFO     | mean y: 2676890.4025974027
[2026-01-10 01:40:23] 2026-01-10 06:39:28,302 | INFO     | intersect: 3695558468.1121964
[2026-01-10 01:40:23] 2026-01-10 06:39:28,302 | INFO     | chi2: 0.02138226378747103
[2026-01-10 01:40:23] 2026-01-10 06:39:28,302 | INFO     | current memory leak: -2.09 B/s (using 77 data points, chi2=0.02)
[2026-01-10 01:40:23] 2026-01-10 06:39:28,302 | INFO     | could have reported an average CPU frequency of 2128 MHz (7 samples)
[2026-01-10 01:40:23] 2026-01-10 06:39:28,302 | INFO     | ..............................
[2026-01-10 01:40:23] 2026-01-10 06:39:28,303 | INFO     | . Timing measurements:
[2026-01-10 01:40:23] 2026-01-10 06:39:28,303 | INFO     | . get job = 0 s
[2026-01-10 01:40:23] 2026-01-10 06:39:28,303 | INFO     | . initial setup = 2 s
[2026-01-10 01:40:23] 2026-01-10 06:39:28,303 | INFO     | . payload setup = 6 s
[2026-01-10 01:40:23] 2026-01-10 06:39:28,303 | INFO     | . stage-in = 0 s
[2026-01-10 01:40:23] 2026-01-10 06:39:28,303 | INFO     | . payload execution = 6287 s
[2026-01-10 01:40:23] 2026-01-10 06:39:28,303 | INFO     | . stage-out = 0 s
[2026-01-10 01:40:23] 2026-01-10 06:39:28,303 | INFO     | . log creation = 0 s
[2026-01-10 01:40:23] 2026-01-10 06:39:28,303 | INFO     | ..............................
[2026-01-10 01:40:23] 2026-01-10 06:39:28,383 | INFO     | 
[2026-01-10 01:40:23] 2026-01-10 06:39:28,383 | INFO     | job summary report
[2026-01-10 01:40:23] 2026-01-10 06:39:28,383 | INFO     | --------------------------------------------------
[2026-01-10 01:40:23] 2026-01-10 06:39:28,384 | INFO     | PanDA job id: 6963167627
[2026-01-10 01:40:23] 2026-01-10 06:39:28,384 | INFO     | task id: 47898826
[2026-01-10 01:40:23] 2026-01-10 06:39:28,384 | INFO     | errors: (none)
[2026-01-10 01:40:23] 2026-01-10 06:39:28,384 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 01:40:23] 2026-01-10 06:39:28,384 | INFO     | pilot state: finished 
[2026-01-10 01:40:23] 2026-01-10 06:39:28,384 | INFO     | transexitcode: 0
[2026-01-10 01:40:23] 2026-01-10 06:39:28,385 | INFO     | exeerrorcode: 0
[2026-01-10 01:40:23] 2026-01-10 06:39:28,385 | INFO     | exeerrordiag: 
[2026-01-10 01:40:23] 2026-01-10 06:39:28,385 | INFO     | exitcode: 0
[2026-01-10 01:40:23] 2026-01-10 06:39:28,385 | INFO     | exitmsg: OK
[2026-01-10 01:40:23] 2026-01-10 06:39:28,385 | INFO     | cpuconsumptiontime: 69575 s
[2026-01-10 01:40:23] 2026-01-10 06:39:28,385 | INFO     | nevents: 400
[2026-01-10 01:40:23] 2026-01-10 06:39:28,385 | INFO     | neventsw: 0
[2026-01-10 01:40:23] 2026-01-10 06:39:28,386 | INFO     | pid: 17860
[2026-01-10 01:40:23] 2026-01-10 06:39:28,386 | INFO     | pgrp: 17860
[2026-01-10 01:40:23] 2026-01-10 06:39:28,386 | INFO     | corecount: 12
[2026-01-10 01:40:23] 2026-01-10 06:39:28,386 | INFO     | event service: False
[2026-01-10 01:40:23] 2026-01-10 06:39:28,386 | INFO     | sizes: {0: 2283971, 5: 2284233, 11: 2284289, 6298: 2311253, 6299: 2320251, 6301: 2320307, 6305: 2320629}
[2026-01-10 01:40:23] 2026-01-10 06:39:28,386 | INFO     | --------------------------------------------------
[2026-01-10 01:40:23] 2026-01-10 06:39:28,387 | INFO     | 
[2026-01-10 01:40:23] 2026-01-10 06:39:28,387 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 01:40:23] 2026-01-10 06:39:28,409 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,410 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,410 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,410 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,410 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,410 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,411 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,411 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,411 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,411 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,411 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,411 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,412 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,412 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,412 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,412 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,412 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,412 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 01:40:23] 2026-01-10 06:39:28,413 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,413 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 01:40:23] 2026-01-10 06:39:28,413 | INFO     | job 6963167627 has completed (purged errors)
[2026-01-10 01:40:23] 2026-01-10 06:39:28,413 | INFO     | overall cleanup function is called
[2026-01-10 01:40:23] 2026-01-10 06:39:29,421 | INFO     | --- collectZombieJob: --- 10, [17860]
[2026-01-10 01:40:23] 2026-01-10 06:39:29,421 | INFO     | zombie collector waiting for pid 17860
[2026-01-10 01:40:23] 2026-01-10 06:39:29,422 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 01:40:23] 2026-01-10 06:39:29,422 | INFO     | collected zombie processes
[2026-01-10 01:40:23] 2026-01-10 06:39:29,422 | INFO     | will attempt to kill all subprocesses of pid=17860
[2026-01-10 01:40:23] 2026-01-10 06:39:29,512 | INFO     | process IDs to be killed: [17860] (in reverse order)
[2026-01-10 01:40:23] 2026-01-10 06:39:29,561 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 01:40:23] 2026-01-10 06:39:29,562 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 01:40:23] 2026-01-10 06:39:29,565 | INFO     | did not find any defunct processes belonging to 17860
[2026-01-10 01:40:23] 2026-01-10 06:39:29,568 | INFO     | did not find any defunct processes belonging to 17860
[2026-01-10 01:40:23] 2026-01-10 06:39:29,568 | INFO     | ready for new job
[2026-01-10 01:40:23] 2026-01-10 06:39:29,568 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 01:40:23] 2026-01-10 06:39:29,569 | INFO     | ***************************************
[2026-01-10 01:40:23] 2026-01-10 06:39:29,570 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 01:40:23] 2026-01-10 06:39:29,570 | INFO     | ***************************************
[2026-01-10 01:40:23] 2026-01-10 06:39:29,570 | INFO     | 
[2026-01-10 01:40:23] 2026-01-10 06:39:29,570 | INFO     | architecture information:
[2026-01-10 01:40:23] 2026-01-10 06:39:29,571 | INFO     | executing command: cat /etc/os-release
[2026-01-10 01:40:23] 2026-01-10 06:39:29,583 | INFO     | cat /etc/os-release:
[2026-01-10 01:40:23] NAME="CentOS Linux"
[2026-01-10 01:40:23] VERSION="7 (Core)"
[2026-01-10 01:40:23] ID="centos"
[2026-01-10 01:40:23] ID_LIKE="rhel fedora"
[2026-01-10 01:40:23] VERSION_ID="7"
[2026-01-10 01:40:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 01:40:23] ANSI_COLOR="0;31"
[2026-01-10 01:40:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 01:40:23] HOME_URL="https://www.centos.org/"
[2026-01-10 01:40:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 01:40:23] 
[2026-01-10 01:40:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 01:40:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 01:40:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 01:40:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 01:40:23] 
[2026-01-10 01:40:23] 2026-01-10 06:39:29,583 | INFO     | ***************************************
[2026-01-10 01:40:23] 2026-01-10 06:39:30,086 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 01:40:23] 2026-01-10 06:39:30,102 | INFO     | sufficient remaining disk space (29309796352 B)
[2026-01-10 01:40:23] 2026-01-10 06:39:30,102 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 01:40:23] 2026-01-10 06:39:30,103 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 01:40:23] 2026-01-10 06:39:30,103 | INFO     | update_server=False
[2026-01-10 01:40:23] 2026-01-10 06:39:30,103 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 01:40:23] 2026-01-10 06:39:30,103 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 01:40:23] 2026-01-10 06:39:30,104 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 01:40:23] 2026-01-10 06:39:30,104 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 01:40:23] 2026-01-10 06:39:30,230 | INFO     | all job control threads have been joined
[2026-01-10 01:40:23] 2026-01-10 06:39:30,234 | INFO     | all data control threads have been joined
[2026-01-10 01:40:23] 2026-01-10 06:39:30,970 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 01:40:23] 2026-01-10 06:39:30,971 | INFO     | aborting loop
[2026-01-10 01:40:23] 2026-01-10 06:39:31,108 | INFO     | [job] retrieve thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:31,109 | INFO     | [job] queue monitor thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:31,218 | INFO     | [payload] failed_post thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:31,236 | INFO     | [job] control thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:31,236 | INFO     | [data] control thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:31,285 | INFO     | all payload control threads have been joined
[2026-01-10 01:40:23] 2026-01-10 06:39:31,316 | INFO     | [data] copytool_in thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:31,631 | INFO     | [payload] validate_post thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:31,696 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:31,976 | INFO     | [job] job monitor thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:31,989 | INFO     | [job] validate thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:32,110 | INFO     | [data] copytool_out thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:32,290 | INFO     | [payload] control thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:32,369 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:32,369 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:32,439 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:34,110 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 01:40:23] 2026-01-10 06:39:59,704 | INFO     | PID=11387 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 01:40:23] 2026-01-10 06:39:59,704 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 01:40:23] 2026-01-10 06:39:59,705 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 01:40:23] 2026-01-10 06:39:59,705 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 01:40:23] 2026-01-10 06:40:17,058 | INFO     | [monitor] cgroup control has ended
[2026-01-10 01:40:23] 2026-01-10 06:40:18,348 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140546142742336)>', '<ExcThread(monitor, started 140545489893120)>']
[2026-01-10 01:40:23] 2026-01-10 06:40:18,799 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 01:40:23] 2026-01-10 06:40:18,799 | INFO     | [monitor] control thread has ended
[2026-01-10 01:40:23] 2026-01-10 06:40:23,373 | INFO     | all workflow threads have been joined
[2026-01-10 01:40:23] 2026-01-10 06:40:23,373 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 01:40:23] 2026-01-10 06:40:23,373 | INFO     | traces error code: 0
[2026-01-10 01:40:23] 2026-01-10 06:40:23,376 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 01:40:23] 2026-01-10 06:40:23,475 [wrapper] ==== pilot stdout END ====
[2026-01-10 01:40:23] 2026-01-10 06:40:23,479 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 01:40:23] 2026-01-10 06:40:23,482 [wrapper] pilotpid: 11387
[2026-01-10 01:40:23] 2026-01-10 06:40:23,486 [wrapper] Pilot exit status: 0
[2026-01-10 01:40:23] 2026-01-10 06:40:23,501 [wrapper] pandaids: 6963167627
[2026-01-10 01:40:23] 2026-01-10 06:40:23,544 [wrapper] cleanup supervisor_pilot 22917 11388
[2026-01-10 01:40:23] 2026-01-10 06:40:23,548 [wrapper] Test setup, not cleaning
[2026-01-10 01:40:23] 2026-01-10 06:40:23,552 [wrapper] apfmon messages muted
[2026-01-10 01:40:23] 2026-01-10 06:40:23,555 [wrapper] ==== wrapper stdout END ====
[2026-01-10 01:40:23] 2026-01-10 06:40:23,559 [wrapper] ==== wrapper stderr END ====
[2026-01-10 01:40:23]  *** Error codes and diagnostics ***
[2026-01-10 01:40:23]     "exeErrorCode": 0,
[2026-01-10 01:40:23]     "exeErrorDiag": "",
[2026-01-10 01:40:23]     "pilotErrorCode": 0,
[2026-01-10 01:40:23]     "pilotErrorDiag": "",
[2026-01-10 01:40:23]  *** Listing of results directory ***
[2026-01-10 01:40:23] total 441676
[2026-01-10 01:40:23] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-10 01:40:23] -rwx------ 1 boincer umatlas     36322 Jan  8 19:59 runpilot2-wrapper.sh
[2026-01-10 01:40:23] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 20:03 queuedata.json
[2026-01-10 01:40:23] -rw-r--r-- 1 boincer umatlas       100 Jan  9 23:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 01:40:23] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 23:53 run_atlas
[2026-01-10 01:40:23] -rw-r--r-- 1 boincer umatlas       105 Jan  9 23:53 job.xml
[2026-01-10 01:40:23] -rw-r--r-- 2 boincer umatlas 224489145 Jan  9 23:53 EVNT.47898824._001333.pool.root.1
[2026-01-10 01:40:23] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 23:53 start_atlas.sh
[2026-01-10 01:40:23] drwxrwx--x 2 boincer umatlas      4096 Jan  9 23:53 shared
[2026-01-10 01:40:23] -rw-r--r-- 2 boincer umatlas    592400 Jan  9 23:53 input.tar.gz
[2026-01-10 01:40:23] -rw-r--r-- 1 boincer umatlas         0 Jan  9 23:53 boinc_lockfile
[2026-01-10 01:40:23] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 23:53 pandaJob.out
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas        57 Jan  9 23:53 setup.sh.local
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas    989374 Jan  9 23:54 agis_schedconf.cvmfs.json
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas   1516240 Jan  9 23:54 agis_ddmendpoints.agis.ALL.json
[2026-01-10 01:40:23] drwx------ 5 boincer umatlas      4096 Jan  9 23:54 pilot3
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas 221241933 Jan 10 01:38 HITS.47898826._035868.pool.root.1
[2026-01-10 01:40:23] -rw-r--r-- 1 boincer umatlas       529 Jan 10 01:39 boinc_task_state.xml
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas      1046 Jan 10 01:39 memory_monitor_summary.json
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas    417467 Jan 10 01:39 log.47898826._035868.job.log.tgz.1
[2026-01-10 01:40:23] -rw-r--r-- 1 boincer umatlas      5953 Jan 10 01:39 init_data.xml
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas      7847 Jan 10 01:39 heartbeat.json
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas        95 Jan 10 01:39 pilot_heartbeat.json
[2026-01-10 01:40:23] -rw-r--r-- 1 boincer umatlas      8192 Jan 10 01:40 boinc_mmap_file
[2026-01-10 01:40:23] -rw-r--r-- 1 boincer umatlas        27 Jan 10 01:40 wrapper_checkpoint.txt
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas      4746 Jan 10 01:40 pilotlog.txt
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas    897068 Jan 10 01:40 log.47898826._035868.job.log.1
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas       357 Jan 10 01:40 output.list
[2026-01-10 01:40:23] -rw-r--r-- 1 boincer umatlas       620 Jan 10 01:40 runtime_log
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas   1331200 Jan 10 01:40 result.tar.gz
[2026-01-10 01:40:23] -rw-r--r-- 1 boincer umatlas      9344 Jan 10 01:40 runtime_log.err
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas       660 Jan 10 01:40 gGWNDmY1Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMmgKDmqQTbUm.diag
[2026-01-10 01:40:23] -rw-r--r-- 1 boincer umatlas     21384 Jan 10 01:40 stderr.txt
[2026-01-10 01:40:23] HITS file was successfully produced:
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas 221241933 Jan 10 01:38 shared/HITS.pool.root.1
[2026-01-10 01:40:23]  *** Contents of shared directory: ***
[2026-01-10 01:40:23] total 437192
[2026-01-10 01:40:23] -rw-r--r-- 2 boincer umatlas 224489145 Jan  9 23:53 ATLAS.root_0
[2026-01-10 01:40:23] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 23:53 start_atlas.sh
[2026-01-10 01:40:23] -rw-r--r-- 2 boincer umatlas    592400 Jan  9 23:53 input.tar.gz
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas 221241933 Jan 10 01:38 HITS.pool.root.1
[2026-01-10 01:40:23] -rw------- 1 boincer umatlas   1331200 Jan 10 01:40 result.tar.gz
01:40:25 (7643): run_atlas exited; CPU time 69563.562539
01:40:25 (7643): called boinc_finish(0)

</stderr_txt>
]]>

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