Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:13:40 (3637417): wrapper (7.7.26015): starting
22:13:40 (3637417): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 22:13:40] Arguments: --nthreads 9
[2026-01-09 22:13:40] Threads: 9
[2026-01-09 22:13:40] Checking for CVMFS
[2026-01-09 22:13:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 22:13:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 22:13:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 22:13:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 22:13:40] 2.13.3.0 313591 17791 84528 154965 2 49 27230752 37030912 966 16776704 0 5999499 99.988 559467 56131 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 22:13:40] CVMFS is ok
[2026-01-09 22:13:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 22:13:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 22:13:40] Further information can be found at the LHC@home message board.
[2026-01-09 22:13:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 22:13:40] Checking for apptainer binary...
[2026-01-09 22:13:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 22:13:40] Running /usr/bin/apptainer --version
[2026-01-09 22:13:40] apptainer version 1.4.5-2.el9
[2026-01-09 22:13:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 22:13:40] c-205-37.aglt2.org
[2026-01-09 22:13:40] apptainer works
[2026-01-09 22:13:40] Set ATHENA_PROC_NUMBER=9
[2026-01-09 22:13:40] Set ATHENA_CORE_NUMBER=9
[2026-01-09 22:13:40] Starting ATLAS job with PandaID=6963075355
[2026-01-09 22:13:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:51:02]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:51:02]  protocol_id=None
[2026-01-09 23:51:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-09 23:51:02]  replicas=None
[2026-01-09 23:51:02]  scope=mc23_13p6TeV
[2026-01-09 23:51:02]  status=None
[2026-01-09 23:51:02]  status_code=0
[2026-01-09 23:51:02]  storage_token=
[2026-01-09 23:51:02]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6963075355/log.47898826._023465.job.log.tgz.1
[2026-01-09 23:51:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/92/log.47898826._023465.job.log.tgz.1
[2026-01-09 23:51:02]  workdir=None
[2026-01-09 23:51:02] ]
[2026-01-09 23:51:02] 2026-01-10 04:50:23,145 | INFO     | transferring file log.47898826._023465.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6963075355/log.47898826._023465.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 23:51:02] 2026-01-10 04:50:23,145 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6963075355/log.47898826._023465.job.log.tgz.1 /tmp/boinchome/slots/1/log.47898826._023465.job
[2026-01-09 23:51:02] 2026-01-10 04:50:23,155 | INFO     | adding to output.list: log.47898826._023465.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/92/log.47898826._023465.job.log.tg
[2026-01-09 23:51:02] 2026-01-10 04:50:23,156 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 23:51:02] 2026-01-10 04:50:23,156 | INFO     | summary of transferred files:
[2026-01-09 23:51:02] 2026-01-10 04:50:23,156 | INFO     |  -- lfn=log.47898826._023465.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 23:51:02] 2026-01-10 04:50:23,156 | INFO     | stage-out finished correctly
[2026-01-09 23:51:02] 2026-01-10 04:50:23,519 | INFO     | PID=3641119 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 23:51:02] 2026-01-10 04:50:23,519 | INFO     | .. there are 2 such processes running
[2026-01-09 23:51:02] 2026-01-10 04:50:23,950 | WARNING  | process 3647522 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 23:51:02] 2026-01-10 04:50:23,950 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963075355/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:51:02] 2026-01-10 04:50:24,061 | INFO     | number of running child processes to parent process 3647522: 1
[2026-01-09 23:51:02] 2026-01-10 04:50:24,061 | INFO     | maximum number of monitored processes: 6
[2026-01-09 23:51:02] 2026-01-10 04:50:24,519 | INFO     | time since job start (5796s) is within the limit (174528.0s)
[2026-01-09 23:51:02] 2026-01-10 04:50:25,214 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 23:51:02] 2026-01-10 04:50:25,930 | INFO     | job 6963075355 has state=finished
[2026-01-09 23:51:02] 2026-01-10 04:50:25,930 | INFO     | preparing for final server update for job 6963075355 in state='finished'
[2026-01-09 23:51:02] 2026-01-10 04:50:25,930 | INFO     | this job has now completed (state=finished)
[2026-01-09 23:51:02] 2026-01-10 04:50:25,931 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 23:51:02] 2026-01-10 04:50:25,931 | INFO     | log transfer has been attempted: DONE
[2026-01-09 23:51:02] 2026-01-10 04:50:25,931 | INFO     | job 6963075355 has finished - writing final server update
[2026-01-09 23:51:02] 2026-01-10 04:50:25,931 | INFO     | total number of processed events: 400 (read)
[2026-01-09 23:51:02] 2026-01-10 04:50:25,932 | INFO     | executing command: lscpu
[2026-01-09 23:51:02] 2026-01-10 04:50:25,954 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 23:51:02] 2026-01-10 04:50:26,525 | INFO     | time since job start (5798s) is within the limit (174528.0s)
[2026-01-09 23:51:02] 2026-01-10 04:50:26,563 | INFO     | monitor loop #436: job 0:6963075355 is in state 'finished'
[2026-01-09 23:51:02] 2026-01-10 04:50:26,563 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:51:02] 2026-01-10 04:50:28,096 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 23:51:02] 2026-01-10 04:50:28,102 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2768.9653437499996
[2026-01-09 23:51:02] 2026-01-10 04:50:28,108 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963075355/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:51:02] 2026-01-10 04:50:28,109 | INFO     | extracted standard info from prmon json
[2026-01-09 23:51:02] 2026-01-10 04:50:28,109 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 23:51:02] 2026-01-10 04:50:28,109 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 23:51:02] 2026-01-10 04:50:28,110 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 23:51:02] 2026-01-10 04:50:28,110 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 23:51:02] 2026-01-10 04:50:28,112 | INFO     | fitting pss+swap vs Time
[2026-01-09 23:51:02] 2026-01-10 04:50:28,112 | INFO     | sum of square deviations: 211285822.0
[2026-01-09 23:51:02] 2026-01-10 04:50:28,113 | INFO     | sum of deviations: -6231161925.500001
[2026-01-09 23:51:02] 2026-01-10 04:50:28,113 | INFO     | mean x: 1768017805.5
[2026-01-09 23:51:02] 2026-01-10 04:50:28,113 | INFO     | mean y: 2684848.6931818184
[2026-01-09 23:51:02] 2026-01-10 04:50:28,113 | INFO     | intersect: 52144400411.783195
[2026-01-09 23:51:02] 2026-01-10 04:50:28,114 | INFO     | chi2: 0.026735350904615332
[2026-01-09 23:51:02] 2026-01-10 04:50:28,114 | INFO     | current memory leak: -29.49 B/s (using 88 data points, chi2=0.03)
[2026-01-09 23:51:02] 2026-01-10 04:50:28,114 | INFO     | could have reported an average CPU frequency of 2717 MHz (7 samples)
[2026-01-09 23:51:02] 2026-01-10 04:50:28,115 | INFO     | ..............................
[2026-01-09 23:51:02] 2026-01-10 04:50:28,115 | INFO     | . Timing measurements:
[2026-01-09 23:51:02] 2026-01-10 04:50:28,115 | INFO     | . get job = 0 s
[2026-01-09 23:51:02] 2026-01-10 04:50:28,115 | INFO     | . initial setup = 2 s
[2026-01-09 23:51:02] 2026-01-10 04:50:28,115 | INFO     | . payload setup = 3 s
[2026-01-09 23:51:02] 2026-01-10 04:50:28,115 | INFO     | . stage-in = 0 s
[2026-01-09 23:51:02] 2026-01-10 04:50:28,115 | INFO     | . payload execution = 5773 s
[2026-01-09 23:51:02] 2026-01-10 04:50:28,115 | INFO     | . stage-out = 0 s
[2026-01-09 23:51:02] 2026-01-10 04:50:28,115 | INFO     | . log creation = 0 s
[2026-01-09 23:51:02] 2026-01-10 04:50:28,116 | INFO     | ..............................
[2026-01-09 23:51:02] 2026-01-10 04:50:28,190 | INFO     | 
[2026-01-09 23:51:02] 2026-01-10 04:50:28,190 | INFO     | job summary report
[2026-01-09 23:51:02] 2026-01-10 04:50:28,190 | INFO     | --------------------------------------------------
[2026-01-09 23:51:02] 2026-01-10 04:50:28,190 | INFO     | PanDA job id: 6963075355
[2026-01-09 23:51:02] 2026-01-10 04:50:28,190 | INFO     | task id: 47898826
[2026-01-09 23:51:02] 2026-01-10 04:50:28,190 | INFO     | errors: (none)
[2026-01-09 23:51:02] 2026-01-10 04:50:28,190 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 23:51:02] 2026-01-10 04:50:28,190 | INFO     | pilot state: finished 
[2026-01-09 23:51:02] 2026-01-10 04:50:28,190 | INFO     | transexitcode: 0
[2026-01-09 23:51:02] 2026-01-10 04:50:28,191 | INFO     | exeerrorcode: 0
[2026-01-09 23:51:02] 2026-01-10 04:50:28,191 | INFO     | exeerrordiag: 
[2026-01-09 23:51:02] 2026-01-10 04:50:28,191 | INFO     | exitcode: 0
[2026-01-09 23:51:02] 2026-01-10 04:50:28,191 | INFO     | exitmsg: OK
[2026-01-09 23:51:02] 2026-01-10 04:50:28,191 | INFO     | cpuconsumptiontime: 48367 s
[2026-01-09 23:51:02] 2026-01-10 04:50:28,191 | INFO     | nevents: 400
[2026-01-09 23:51:02] 2026-01-10 04:50:28,191 | INFO     | neventsw: 0
[2026-01-09 23:51:02] 2026-01-10 04:50:28,191 | INFO     | pid: 3647522
[2026-01-09 23:51:02] 2026-01-10 04:50:28,191 | INFO     | pgrp: 3647522
[2026-01-09 23:51:02] 2026-01-10 04:50:28,191 | INFO     | corecount: 9
[2026-01-09 23:51:02] 2026-01-10 04:50:28,191 | INFO     | event service: False
[2026-01-09 23:51:02] 2026-01-10 04:50:28,191 | INFO     | sizes: {0: 2283969, 2: 2284231, 11: 2284259, 5780: 2311029, 5782: 2320027, 5784: 2320083, 5787: 2320405}
[2026-01-09 23:51:02] 2026-01-10 04:50:28,191 | INFO     | --------------------------------------------------
[2026-01-09 23:51:02] 2026-01-10 04:50:28,191 | INFO     | 
[2026-01-09 23:51:02] 2026-01-10 04:50:28,191 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 23:51:02] 2026-01-10 04:50:28,202 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,202 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,202 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,202 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,202 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,203 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,203 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,203 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,203 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,203 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,203 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,203 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,203 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,203 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,203 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,203 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,203 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,203 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 23:51:02] 2026-01-10 04:50:28,203 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,204 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 23:51:02] 2026-01-10 04:50:28,204 | INFO     | job 6963075355 has completed (purged errors)
[2026-01-09 23:51:02] 2026-01-10 04:50:28,204 | INFO     | overall cleanup function is called
[2026-01-09 23:51:02] 2026-01-10 04:50:29,211 | INFO     | --- collectZombieJob: --- 10, [3647522]
[2026-01-09 23:51:02] 2026-01-10 04:50:29,211 | INFO     | zombie collector waiting for pid 3647522
[2026-01-09 23:51:02] 2026-01-10 04:50:29,211 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 23:51:02] 2026-01-10 04:50:29,211 | INFO     | collected zombie processes
[2026-01-09 23:51:02] 2026-01-10 04:50:29,211 | INFO     | will attempt to kill all subprocesses of pid=3647522
[2026-01-09 23:51:02] 2026-01-10 04:50:29,323 | INFO     | process IDs to be killed: [3647522] (in reverse order)
[2026-01-09 23:51:02] 2026-01-10 04:50:29,354 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:51:02] 2026-01-10 04:50:29,354 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:51:02] 2026-01-10 04:50:29,357 | INFO     | did not find any defunct processes belonging to 3647522
[2026-01-09 23:51:02] 2026-01-10 04:50:29,359 | INFO     | did not find any defunct processes belonging to 3647522
[2026-01-09 23:51:02] 2026-01-10 04:50:29,360 | INFO     | ready for new job
[2026-01-09 23:51:02] 2026-01-10 04:50:29,360 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:51:02] 2026-01-10 04:50:29,361 | INFO     | ***************************************
[2026-01-09 23:51:02] 2026-01-10 04:50:29,361 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:51:02] 2026-01-10 04:50:29,361 | INFO     | ***************************************
[2026-01-09 23:51:02] 2026-01-10 04:50:29,361 | INFO     | 
[2026-01-09 23:51:02] 2026-01-10 04:50:29,362 | INFO     | architecture information:
[2026-01-09 23:51:02] 2026-01-10 04:50:29,362 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:51:02] 2026-01-10 04:50:29,370 | INFO     | cat /etc/os-release:
[2026-01-09 23:51:02] NAME="CentOS Linux"
[2026-01-09 23:51:02] VERSION="7 (Core)"
[2026-01-09 23:51:02] ID="centos"
[2026-01-09 23:51:02] ID_LIKE="rhel fedora"
[2026-01-09 23:51:02] VERSION_ID="7"
[2026-01-09 23:51:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:51:02] ANSI_COLOR="0;31"
[2026-01-09 23:51:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:51:02] HOME_URL="https://www.centos.org/"
[2026-01-09 23:51:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:51:02] 
[2026-01-09 23:51:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:51:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:51:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:51:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:51:02] 
[2026-01-09 23:51:02] 2026-01-10 04:50:29,370 | INFO     | ***************************************
[2026-01-09 23:51:02] 2026-01-10 04:50:29,873 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 23:51:02] 2026-01-10 04:50:29,881 | INFO     | sufficient remaining disk space (41411411968 B)
[2026-01-09 23:51:02] 2026-01-10 04:50:29,881 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:51:02] 2026-01-10 04:50:29,882 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:51:02] 2026-01-10 04:50:29,882 | INFO     | update_server=False
[2026-01-09 23:51:02] 2026-01-10 04:50:29,882 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:51:02] 2026-01-10 04:50:29,882 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:51:02] 2026-01-10 04:50:29,962 | INFO     | all job control threads have been joined
[2026-01-09 23:51:02] 2026-01-10 04:50:30,071 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:51:02] 2026-01-10 04:50:30,071 | INFO     | aborting loop
[2026-01-09 23:51:02] 2026-01-10 04:50:30,353 | INFO     | all data control threads have been joined
[2026-01-09 23:51:02] 2026-01-10 04:50:30,887 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:30,887 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:30,911 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:30,911 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:30,967 | INFO     | [job] control thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:31,077 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:31,219 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:51:02] 2026-01-10 04:50:31,270 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:51:02] 2026-01-10 04:50:31,285 | INFO     | all payload control threads have been joined
[2026-01-09 23:51:02] 2026-01-10 04:50:31,314 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:31,358 | INFO     | [data] control thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:31,359 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:31,539 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:32,070 | INFO     | [job] validate thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:32,159 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:32,219 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:32,290 | INFO     | [payload] control thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:33,221 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:35,276 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:51:02] 2026-01-10 04:50:56,664 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:51:02] 2026-01-10 04:50:56,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139643296143168)>', '<ExcThread(monitor, started 139642674345728)>']
[2026-01-09 23:51:02] 2026-01-10 04:50:59,735 | INFO     | PID=3641119 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 23:51:02] 2026-01-10 04:50:59,736 | INFO     | .. there are 2 such processes running
[2026-01-09 23:51:02] 2026-01-10 04:50:59,736 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:51:02] 2026-01-10 04:50:59,736 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:51:02] 2026-01-10 04:50:59,736 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:51:02] 2026-01-10 04:50:59,736 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:51:02] 2026-01-10 04:50:59,736 | INFO     | [monitor] control thread has ended
[2026-01-09 23:51:02] 2026-01-10 04:51:01,899 | INFO     | all workflow threads have been joined
[2026-01-09 23:51:02] 2026-01-10 04:51:01,899 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:51:02] 2026-01-10 04:51:01,900 | INFO     | traces error code: 0
[2026-01-09 23:51:02] 2026-01-10 04:51:01,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:51:02] 2026-01-10 04:51:01,993 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:51:02] 2026-01-10 04:51:01,994 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:51:02] 2026-01-10 04:51:01,996 [wrapper] pilotpid: 3641119
[2026-01-09 23:51:02] 2026-01-10 04:51:01,998 [wrapper] Pilot exit status: 0
[2026-01-09 23:51:02] 2026-01-10 04:51:02,004 [wrapper] pandaids: 6963075355
[2026-01-09 23:51:02] 2026-01-10 04:51:02,026 [wrapper] cleanup supervisor_pilot 3713797 3641120
[2026-01-09 23:51:02] 2026-01-10 04:51:02,028 [wrapper] Test setup, not cleaning
[2026-01-09 23:51:02] 2026-01-10 04:51:02,030 [wrapper] apfmon messages muted
[2026-01-09 23:51:02] 2026-01-10 04:51:02,031 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:51:02] 2026-01-10 04:51:02,033 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:51:02]  *** Error codes and diagnostics ***
[2026-01-09 23:51:02]     "exeErrorCode": 0,
[2026-01-09 23:51:02]     "exeErrorDiag": "",
[2026-01-09 23:51:02]     "pilotErrorCode": 0,
[2026-01-09 23:51:02]     "pilotErrorDiag": "",
[2026-01-09 23:51:02]  *** Listing of results directory ***
[2026-01-09 23:51:02] total 441548
[2026-01-09 23:51:02] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 06:06 pilot3.tar.gz
[2026-01-09 23:51:02] -rwx------. 1 boincer umatlas     36322 Jan  8 06:07 runpilot2-wrapper.sh
[2026-01-09 23:51:02] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 06:07 queuedata.json
[2026-01-09 23:51:02] -rw-r--r--. 1 boincer umatlas       100 Jan  9 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:51:02] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 22:13 run_atlas
[2026-01-09 23:51:02] -rw-r--r--. 1 boincer umatlas       105 Jan  9 22:13 job.xml
[2026-01-09 23:51:02] -rw-r--r--. 2 boincer umatlas 226523227 Jan  9 22:13 EVNT.47898824._000935.pool.root.1
[2026-01-09 23:51:02] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 22:13 start_atlas.sh
[2026-01-09 23:51:02] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 22:13 shared
[2026-01-09 23:51:02] -rw-r--r--. 2 boincer umatlas    592397 Jan  9 22:13 input.tar.gz
[2026-01-09 23:51:02] -rw-r--r--. 1 boincer umatlas         0 Jan  9 22:13 boinc_lockfile
[2026-01-09 23:51:02] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 22:13 pandaJob.out
[2026-01-09 23:51:02] -rw-------. 1 boincer umatlas    989382 Jan  9 22:13 agis_schedconf.cvmfs.json
[2026-01-09 23:51:02] -rw-------. 1 boincer umatlas   1516240 Jan  9 22:13 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:51:02] drwx------. 5 boincer umatlas      4096 Jan  9 22:13 pilot3
[2026-01-09 23:51:02] -rw-r--r--. 1 boincer umatlas      6529 Jan  9 23:47 init_data.xml
[2026-01-09 23:51:02] -rw-------. 1 boincer umatlas 219284802 Jan  9 23:49 HITS.47898826._023465.pool.root.1
[2026-01-09 23:51:02] -rw-------. 1 boincer umatlas        95 Jan  9 23:50 pilot_heartbeat.json
[2026-01-09 23:51:02] -rw-r--r--. 1 boincer umatlas       530 Jan  9 23:50 boinc_task_state.xml
[2026-01-09 23:51:02] -rw-------. 1 boincer umatlas      1026 Jan  9 23:50 memory_monitor_summary.json
[2026-01-09 23:51:02] -rw-------. 1 boincer umatlas    362409 Jan  9 23:50 log.47898826._023465.job.log.tgz.1
[2026-01-09 23:51:02] -rw-------. 1 boincer umatlas      7807 Jan  9 23:50 heartbeat.json
[2026-01-09 23:51:02] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 23:50 boinc_mmap_file
[2026-01-09 23:51:02] -rw-r--r--. 1 boincer umatlas        27 Jan  9 23:51 wrapper_checkpoint.txt
[2026-01-09 23:51:02] -rw-------. 1 boincer umatlas      4823 Jan  9 23:51 pilotlog.txt
[2026-01-09 23:51:02] -rw-------. 1 boincer umatlas    849358 Jan  9 23:51 log.47898826._023465.job.log.1
[2026-01-09 23:51:02] -rw-------. 1 boincer umatlas       357 Jan  9 23:51 output.list
[2026-01-09 23:51:02] -rw-r--r--. 1 boincer umatlas       620 Jan  9 23:51 runtime_log
[2026-01-09 23:51:02] -rw-------. 1 boincer umatlas   1228800 Jan  9 23:51 result.tar.gz
[2026-01-09 23:51:02] -rw-r--r--. 1 boincer umatlas      8817 Jan  9 23:51 runtime_log.err
[2026-01-09 23:51:02] -rw-------. 1 boincer umatlas       651 Jan  9 23:51 2vlLDmD22x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOzeKDmuyExhn.diag
[2026-01-09 23:51:02] -rw-r--r--. 1 boincer umatlas     21943 Jan  9 23:51 stderr.txt
[2026-01-09 23:51:02] HITS file was successfully produced:
[2026-01-09 23:51:02] -rw-------. 1 boincer umatlas 219284802 Jan  9 23:49 shared/HITS.pool.root.1
[2026-01-09 23:51:02]  *** Contents of shared directory: ***
[2026-01-09 23:51:02] total 437168
[2026-01-09 23:51:02] -rw-r--r--. 2 boincer umatlas 226523227 Jan  9 22:13 ATLAS.root_0
[2026-01-09 23:51:02] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 22:13 start_atlas.sh
[2026-01-09 23:51:02] -rw-r--r--. 2 boincer umatlas    592397 Jan  9 22:13 input.tar.gz
[2026-01-09 23:51:02] -rw-------. 1 boincer umatlas 219284802 Jan  9 23:49 HITS.pool.root.1
[2026-01-09 23:51:02] -rw-------. 1 boincer umatlas   1228800 Jan  9 23:51 result.tar.gz
23:51:03 (3637417): run_atlas exited; CPU time 48477.447964
23:51:03 (3637417): called boinc_finish(0)

</stderr_txt>
]]>

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