Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:19:48 (26537): wrapper (7.7.26015): starting
20:19:48 (26537): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 20:19:48] Arguments: --nthreads 12
[2026-01-09 20:19:48] Threads: 12
[2026-01-09 20:19:48] Checking for CVMFS
[2026-01-09 20:19:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 20:19:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 20:19:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 20:19:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 20:19:48] 2.11.2.0 2945 351813 96636 154963 3 1 13200113 20275201 1 130560 2 150123162 99.952 21064638 16825 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 20:19:48] CVMFS is ok
[2026-01-09 20:19:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 20:19:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 20:19:48] Further information can be found at the LHC@home message board.
[2026-01-09 20:19:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 20:19:48] Checking for apptainer binary...
[2026-01-09 20:19:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 20:19:48] Running /usr/bin/apptainer --version
[2026-01-09 20:19:48] apptainer version 1.3.2-1.el7
[2026-01-09 20:19:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 20:19:50] c-205-2.aglt2.org
[2026-01-09 20:19:50] apptainer works
[2026-01-09 20:19:50] Set ATHENA_PROC_NUMBER=12
[2026-01-09 20:19:50] Set ATHENA_CORE_NUMBER=12
[2026-01-09 20:19:50] Starting ATLAS job with PandaID=6964539385
[2026-01-09 20:19:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:54:15]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:54:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-09 20:54:15]  replicas=None
[2026-01-09 20:54:15]  scope=mc16_13TeV
[2026-01-09 20:54:15]  status=None
[2026-01-09 20:54:15]  status_code=0
[2026-01-09 20:54:15]  storage_token=
[2026-01-09 20:54:15]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6964539385/log.47962010._001949.job.log.tgz.1
[2026-01-09 20:54:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/2c/28/log.47962010._001949.job.log.tgz.1
[2026-01-09 20:54:15]  workdir=None
[2026-01-09 20:54:15] ]
[2026-01-09 20:54:15] 2026-01-10 01:53:08,218 | INFO     | transferring file log.47962010._001949.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6964539385/log.47962010._001949.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 20:54:15] 2026-01-10 01:53:08,219 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6964539385/log.47962010._001949.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._001949.job
[2026-01-09 20:54:15] 2026-01-10 01:53:08,242 | INFO     | adding to output.list: log.47962010._001949.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/2c/28/log.47962010._001949.job.log.tgz.
[2026-01-09 20:54:15] 2026-01-10 01:53:08,243 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 20:54:15] 2026-01-10 01:53:08,243 | INFO     | summary of transferred files:
[2026-01-09 20:54:15] 2026-01-10 01:53:08,243 | INFO     |  -- lfn=log.47962010._001949.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 20:54:15] 2026-01-10 01:53:08,244 | INFO     | stage-out finished correctly
[2026-01-09 20:54:15] 2026-01-10 01:53:08,325 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 20:54:15] 2026-01-10 01:53:08,733 | INFO     | time since job start (1981s) is within the limit (349056.0s)
[2026-01-09 20:54:15] 2026-01-10 01:53:08,860 | WARNING  | process 5931 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 20:54:15] 2026-01-10 01:53:08,861 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6964539385/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 20:54:15] 2026-01-10 01:53:08,950 | INFO     | number of running child processes to parent process 5931: 1
[2026-01-09 20:54:15] 2026-01-10 01:53:08,950 | INFO     | maximum number of monitored processes: 17
[2026-01-09 20:54:15] 2026-01-10 01:53:10,175 | INFO     | job 6964539385 has state=finished
[2026-01-09 20:54:15] 2026-01-10 01:53:10,175 | INFO     | preparing for final server update for job 6964539385 in state='finished'
[2026-01-09 20:54:15] 2026-01-10 01:53:10,242 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-09 20:54:15] 2026-01-10 01:53:10,243 | INFO     | this job has now completed (state=finished)
[2026-01-09 20:54:15] 2026-01-10 01:53:10,243 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 20:54:15] 2026-01-10 01:53:10,243 | INFO     | log transfer has been attempted: DONE
[2026-01-09 20:54:15] 2026-01-10 01:53:10,243 | INFO     | job 6964539385 has finished - writing final server update
[2026-01-09 20:54:15] 2026-01-10 01:53:10,243 | INFO     | total number of processed events: 50 (read)
[2026-01-09 20:54:15] 2026-01-10 01:53:10,244 | INFO     | executing command: lscpu
[2026-01-09 20:54:15] 2026-01-10 01:53:10,271 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 20:54:15] 2026-01-10 01:53:10,739 | INFO     | time since job start (1983s) is within the limit (349056.0s)
[2026-01-09 20:54:15] 2026-01-10 01:53:11,453 | INFO     | monitor loop #155: job 0:6964539385 is in state 'finished'
[2026-01-09 20:54:15] 2026-01-10 01:53:11,453 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:54:15] 2026-01-10 01:53:12,743 | INFO     | time since job start (1985s) is within the limit (349056.0s)
[2026-01-09 20:54:15] 2026-01-10 01:53:13,956 | INFO     | monitor loop #156: job 0:6964539385 is in state 'finished'
[2026-01-09 20:54:15] 2026-01-10 01:53:13,956 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:54:15] 2026-01-10 01:53:14,748 | INFO     | time since job start (1987s) is within the limit (349056.0s)
[2026-01-09 20:54:15] 2026-01-10 01:53:15,206 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 20:54:15] 2026-01-10 01:53:15,210 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2026-01-09 20:54:15] 2026-01-10 01:53:15,212 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6964539385/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 20:54:15] 2026-01-10 01:53:15,212 | INFO     | extracted standard info from prmon json
[2026-01-09 20:54:15] 2026-01-10 01:53:15,212 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 20:54:15] 2026-01-10 01:53:15,212 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 20:54:15] 2026-01-10 01:53:15,214 | INFO     | fitting pss+swap vs Time
[2026-01-09 20:54:15] 2026-01-10 01:53:15,214 | INFO     | sum of square deviations: 4836206.000000002
[2026-01-09 20:54:15] 2026-01-10 01:53:15,214 | INFO     | sum of deviations: -1034113953.2000002
[2026-01-09 20:54:15] 2026-01-10 01:53:15,214 | INFO     | mean x: 1768009074.2
[2026-01-09 20:54:15] 2026-01-10 01:53:15,214 | INFO     | mean y: 2984472.04
[2026-01-09 20:54:15] 2026-01-10 01:53:15,214 | INFO     | intersect: 378051986730.098
[2026-01-09 20:54:15] 2026-01-10 01:53:15,214 | INFO     | chi2: 0.24952872452580666
[2026-01-09 20:54:15] 2026-01-10 01:53:15,215 | INFO     | current memory leak: -213.83 B/s (using 25 data points, chi2=0.25)
[2026-01-09 20:54:15] 2026-01-10 01:53:15,215 | INFO     | could have reported an average CPU frequency of 1786 MHz (5 samples)
[2026-01-09 20:54:15] 2026-01-10 01:53:15,215 | INFO     | ..............................
[2026-01-09 20:54:15] 2026-01-10 01:53:15,215 | INFO     | . Timing measurements:
[2026-01-09 20:54:15] 2026-01-10 01:53:15,215 | INFO     | . get job = 0 s
[2026-01-09 20:54:15] 2026-01-10 01:53:15,215 | INFO     | . initial setup = 2 s
[2026-01-09 20:54:15] 2026-01-10 01:53:15,215 | INFO     | . payload setup = 8 s
[2026-01-09 20:54:15] 2026-01-10 01:53:15,215 | INFO     | . stage-in = 0 s
[2026-01-09 20:54:15] 2026-01-10 01:53:15,216 | INFO     | . payload execution = 1952 s
[2026-01-09 20:54:15] 2026-01-10 01:53:15,216 | INFO     | . stage-out = 0 s
[2026-01-09 20:54:15] 2026-01-10 01:53:15,216 | INFO     | . log creation = 0 s
[2026-01-09 20:54:15] 2026-01-10 01:53:15,216 | INFO     | ..............................
[2026-01-09 20:54:15] 2026-01-10 01:53:15,296 | INFO     | 
[2026-01-09 20:54:15] 2026-01-10 01:53:15,297 | INFO     | job summary report
[2026-01-09 20:54:15] 2026-01-10 01:53:15,297 | INFO     | --------------------------------------------------
[2026-01-09 20:54:15] 2026-01-10 01:53:15,297 | INFO     | PanDA job id: 6964539385
[2026-01-09 20:54:15] 2026-01-10 01:53:15,297 | INFO     | task id: 47962010
[2026-01-09 20:54:15] 2026-01-10 01:53:15,297 | INFO     | errors: (none)
[2026-01-09 20:54:15] 2026-01-10 01:53:15,297 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 20:54:15] 2026-01-10 01:53:15,298 | INFO     | pilot state: finished 
[2026-01-09 20:54:15] 2026-01-10 01:53:15,298 | INFO     | transexitcode: 0
[2026-01-09 20:54:15] 2026-01-10 01:53:15,298 | INFO     | exeerrorcode: 0
[2026-01-09 20:54:15] 2026-01-10 01:53:15,298 | INFO     | exeerrordiag: 
[2026-01-09 20:54:15] 2026-01-10 01:53:15,298 | INFO     | exitcode: 0
[2026-01-09 20:54:15] 2026-01-10 01:53:15,298 | INFO     | exitmsg: OK
[2026-01-09 20:54:15] 2026-01-10 01:53:15,299 | INFO     | cpuconsumptiontime: 17647 s
[2026-01-09 20:54:15] 2026-01-10 01:53:15,299 | INFO     | nevents: 50
[2026-01-09 20:54:15] 2026-01-10 01:53:15,299 | INFO     | neventsw: 0
[2026-01-09 20:54:15] 2026-01-10 01:53:15,299 | INFO     | pid: 5931
[2026-01-09 20:54:15] 2026-01-10 01:53:15,299 | INFO     | pgrp: 5931
[2026-01-09 20:54:15] 2026-01-10 01:53:15,299 | INFO     | corecount: 12
[2026-01-09 20:54:15] 2026-01-10 01:53:15,299 | INFO     | event service: False
[2026-01-09 20:54:15] 2026-01-10 01:53:15,299 | INFO     | sizes: {0: 2284569, 5: 2284831, 11: 2284887, 1963: 2310604, 1964: 2319653, 1971: 2319875}
[2026-01-09 20:54:15] 2026-01-10 01:53:15,299 | INFO     | --------------------------------------------------
[2026-01-09 20:54:15] 2026-01-10 01:53:15,299 | INFO     | 
[2026-01-09 20:54:15] 2026-01-10 01:53:15,300 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 20:54:15] 2026-01-10 01:53:15,323 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,323 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,323 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,324 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,324 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,324 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,324 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,324 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,324 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,325 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,325 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,325 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,325 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,325 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,326 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,326 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,326 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,326 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:54:15] 2026-01-10 01:53:15,326 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,326 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:54:15] 2026-01-10 01:53:15,327 | INFO     | job 6964539385 has completed (purged errors)
[2026-01-09 20:54:15] 2026-01-10 01:53:15,327 | INFO     | overall cleanup function is called
[2026-01-09 20:54:15] 2026-01-10 01:53:16,342 | INFO     | --- collectZombieJob: --- 10, [5931]
[2026-01-09 20:54:15] 2026-01-10 01:53:16,342 | INFO     | zombie collector waiting for pid 5931
[2026-01-09 20:54:15] 2026-01-10 01:53:16,342 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:54:15] 2026-01-10 01:53:16,342 | INFO     | collected zombie processes
[2026-01-09 20:54:15] 2026-01-10 01:53:16,343 | INFO     | will attempt to kill all subprocesses of pid=5931
[2026-01-09 20:54:15] 2026-01-10 01:53:16,436 | INFO     | process IDs to be killed: [5931] (in reverse order)
[2026-01-09 20:54:15] 2026-01-10 01:53:16,489 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:54:15] 2026-01-10 01:53:16,489 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:54:15] 2026-01-10 01:53:16,492 | INFO     | did not find any defunct processes belonging to 5931
[2026-01-09 20:54:15] 2026-01-10 01:53:16,494 | INFO     | did not find any defunct processes belonging to 5931
[2026-01-09 20:54:15] 2026-01-10 01:53:16,494 | INFO     | ready for new job
[2026-01-09 20:54:15] 2026-01-10 01:53:16,494 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:54:15] 2026-01-10 01:53:16,495 | INFO     | ***************************************
[2026-01-09 20:54:15] 2026-01-10 01:53:16,495 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:54:15] 2026-01-10 01:53:16,495 | INFO     | ***************************************
[2026-01-09 20:54:15] 2026-01-10 01:53:16,495 | INFO     | 
[2026-01-09 20:54:15] 2026-01-10 01:53:16,496 | INFO     | architecture information:
[2026-01-09 20:54:15] 2026-01-10 01:53:16,497 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:54:15] 2026-01-10 01:53:16,511 | INFO     | cat /etc/os-release:
[2026-01-09 20:54:15] NAME="CentOS Linux"
[2026-01-09 20:54:15] VERSION="7 (Core)"
[2026-01-09 20:54:15] ID="centos"
[2026-01-09 20:54:15] ID_LIKE="rhel fedora"
[2026-01-09 20:54:15] VERSION_ID="7"
[2026-01-09 20:54:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:54:15] ANSI_COLOR="0;31"
[2026-01-09 20:54:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:54:15] HOME_URL="https://www.centos.org/"
[2026-01-09 20:54:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:54:15] 
[2026-01-09 20:54:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:54:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:54:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:54:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:54:15] 
[2026-01-09 20:54:15] 2026-01-10 01:53:16,512 | INFO     | ***************************************
[2026-01-09 20:54:15] 2026-01-10 01:53:17,015 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 20:54:15] 2026-01-10 01:53:17,032 | INFO     | sufficient remaining disk space (29219618816 B)
[2026-01-09 20:54:15] 2026-01-10 01:53:17,032 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:54:15] 2026-01-10 01:53:17,033 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:54:15] 2026-01-10 01:53:17,033 | INFO     | update_server=False
[2026-01-09 20:54:15] 2026-01-10 01:53:17,033 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:54:15] 2026-01-10 01:53:17,033 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:54:15] 2026-01-10 01:53:17,034 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:54:15] 2026-01-10 01:53:17,464 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:54:15] 2026-01-10 01:53:17,464 | INFO     | aborting loop
[2026-01-09 20:54:15] 2026-01-10 01:53:17,662 | INFO     | all data control threads have been joined
[2026-01-09 20:54:15] 2026-01-10 01:53:18,039 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:18,039 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:18,114 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:18,364 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:18,460 | INFO     | all payload control threads have been joined
[2026-01-09 20:54:15] 2026-01-10 01:53:18,470 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:18,511 | INFO     | [job] validate thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:18,636 | INFO     | all job control threads have been joined
[2026-01-09 20:54:15] 2026-01-10 01:53:18,667 | INFO     | [data] control thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:18,910 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:18,910 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:54:15] 2026-01-10 01:53:18,927 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:18,947 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:19,039 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:19,455 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:19,465 | INFO     | [payload] control thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:19,641 | INFO     | [job] control thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:22,916 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:27,869 | INFO     | job.realtimelogging is not enabled
[2026-01-09 20:54:15] 2026-01-10 01:53:28,870 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:54:15] 2026-01-10 01:53:47,953 | INFO     | PID=30977 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 20:54:15] 2026-01-10 01:53:47,954 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:54:15] 2026-01-10 01:53:47,954 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:54:15] 2026-01-10 01:53:47,954 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:54:15] 2026-01-10 01:54:09,717 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:54:15] 2026-01-10 01:54:09,836 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140495845992256)>', '<ExcThread(monitor, started 140495376324352)>']
[2026-01-09 20:54:15] 2026-01-10 01:54:10,062 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:54:15] 2026-01-10 01:54:10,062 | INFO     | [monitor] control thread has ended
[2026-01-09 20:54:15] 2026-01-10 01:54:14,841 | INFO     | all workflow threads have been joined
[2026-01-09 20:54:15] 2026-01-10 01:54:14,842 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:54:15] 2026-01-10 01:54:14,843 | INFO     | traces error code: 0
[2026-01-09 20:54:15] 2026-01-10 01:54:14,843 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:54:15] 2026-01-10 01:54:14,923 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:54:15] 2026-01-10 01:54:14,927 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:54:15] 2026-01-10 01:54:14,931 [wrapper] pilotpid: 30977
[2026-01-09 20:54:15] 2026-01-10 01:54:14,934 [wrapper] Pilot exit status: 0
[2026-01-09 20:54:15] 2026-01-10 01:54:14,947 [wrapper] pandaids: 6964539385
[2026-01-09 20:54:15] 2026-01-10 01:54:14,994 [wrapper] cleanup supervisor_pilot 18685 30978
[2026-01-09 20:54:15] 2026-01-10 01:54:14,998 [wrapper] Test setup, not cleaning
[2026-01-09 20:54:15] 2026-01-10 01:54:15,002 [wrapper] apfmon messages muted
[2026-01-09 20:54:15] 2026-01-10 01:54:15,006 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:54:15] 2026-01-10 01:54:15,010 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:54:15]  *** Error codes and diagnostics ***
[2026-01-09 20:54:15]     "exeErrorCode": 0,
[2026-01-09 20:54:15]     "exeErrorDiag": "",
[2026-01-09 20:54:15]     "pilotErrorCode": 0,
[2026-01-09 20:54:15]     "pilotErrorDiag": "",
[2026-01-09 20:54:15]  *** Listing of results directory ***
[2026-01-09 20:54:15] total 432804
[2026-01-09 20:54:15] -rw-r--r-- 1 boincer umatlas    579449 Jan  9 10:55 pilot3.tar.gz
[2026-01-09 20:54:15] -rwx------ 1 boincer umatlas     36322 Jan  9 11:00 runpilot2-wrapper.sh
[2026-01-09 20:54:15] -rw-r--r-- 1 boincer umatlas      5112 Jan  9 11:00 queuedata.json
[2026-01-09 20:54:15] -rw-r--r-- 1 boincer umatlas       100 Jan  9 20:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:54:15] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 20:19 run_atlas
[2026-01-09 20:54:15] -rw-r--r-- 1 boincer umatlas       105 Jan  9 20:19 job.xml
[2026-01-09 20:54:15] -rw-r--r-- 2 boincer umatlas 392805046 Jan  9 20:19 EVNT.47962006._000046.pool.root.1
[2026-01-09 20:54:15] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 20:19 start_atlas.sh
[2026-01-09 20:54:15] drwxrwx--x 2 boincer umatlas      4096 Jan  9 20:19 shared
[2026-01-09 20:54:15] -rw-r--r-- 2 boincer umatlas    592614 Jan  9 20:19 input.tar.gz
[2026-01-09 20:54:15] -rw-r--r-- 1 boincer umatlas         0 Jan  9 20:19 boinc_lockfile
[2026-01-09 20:54:15] -rw-r--r-- 1 boincer umatlas      2890 Jan  9 20:19 pandaJob.out
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas        57 Jan  9 20:19 setup.sh.local
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas    989382 Jan  9 20:20 agis_schedconf.cvmfs.json
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas   1516240 Jan  9 20:20 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:54:15] drwx------ 5 boincer umatlas      4096 Jan  9 20:20 pilot3
[2026-01-09 20:54:15] -rw-r--r-- 1 boincer umatlas       529 Jan  9 20:45 boinc_task_state.xml
[2026-01-09 20:54:15] -rw-r--r-- 1 boincer umatlas      5952 Jan  9 20:49 init_data.xml
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas  42600053 Jan  9 20:52 HITS.47962010._001949.pool.root.1
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas      1048 Jan  9 20:53 memory_monitor_summary.json
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas   1604511 Jan  9 20:53 log.47962010._001949.job.log.tgz.1
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas      8604 Jan  9 20:53 heartbeat.json
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas        95 Jan  9 20:53 pilot_heartbeat.json
[2026-01-09 20:54:15] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 20:54 boinc_mmap_file
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas      4818 Jan  9 20:54 pilotlog.txt
[2026-01-09 20:54:15] -rw-r--r-- 1 boincer umatlas        27 Jan  9 20:54 wrapper_checkpoint.txt
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas    327710 Jan  9 20:54 log.47962010._001949.job.log.1
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas       353 Jan  9 20:54 output.list
[2026-01-09 20:54:15] -rw-r--r-- 1 boincer umatlas       620 Jan  9 20:54 runtime_log
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas   1955840 Jan  9 20:54 result.tar.gz
[2026-01-09 20:54:15] -rw-r--r-- 1 boincer umatlas      9339 Jan  9 20:54 runtime_log.err
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas       658 Jan  9 20:54 QpzLDmJ5Ty8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXgmKDm9rXiQm.diag
[2026-01-09 20:54:15] -rw-r--r-- 1 boincer umatlas     21923 Jan  9 20:54 stderr.txt
[2026-01-09 20:54:15] HITS file was successfully produced:
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas 42600053 Jan  9 20:52 shared/HITS.pool.root.1
[2026-01-09 20:54:15]  *** Contents of shared directory: ***
[2026-01-09 20:54:15] total 427712
[2026-01-09 20:54:15] -rw-r--r-- 2 boincer umatlas 392805046 Jan  9 20:19 ATLAS.root_0
[2026-01-09 20:54:15] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 20:19 start_atlas.sh
[2026-01-09 20:54:15] -rw-r--r-- 2 boincer umatlas    592614 Jan  9 20:19 input.tar.gz
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas  42600053 Jan  9 20:52 HITS.pool.root.1
[2026-01-09 20:54:15] -rw------- 1 boincer umatlas   1955840 Jan  9 20:54 result.tar.gz
20:54:16 (26537): run_atlas exited; CPU time 17309.975860
20:54:16 (26537): called boinc_finish(0)

</stderr_txt>
]]>

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