Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:40:43 (5948): wrapper (7.7.26015): starting
07:40:43 (5948): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 07:40:43] Arguments: --nthreads 8
[2026-01-10 07:40:43] Threads: 8
[2026-01-10 07:40:43] Checking for CVMFS
[2026-01-10 07:40:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 07:40:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 07:40:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 07:40:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 07:40:47] 2.11.2.0 15680 36507 129612 154970 2 60 18722128 25165824 899 130560 0 16489139 99.800 11574796 3108 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 07:40:47] CVMFS is ok
[2026-01-10 07:40:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 07:40:47] Checking for apptainer binary...
[2026-01-10 07:40:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 07:40:47] Running /usr/bin/apptainer --version
[2026-01-10 07:40:47] apptainer version 1.3.2-1.el7
[2026-01-10 07:40:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 07:41:03] cg-vwn486.simple-grid.lan
[2026-01-10 07:41:03] apptainer works
[2026-01-10 07:41:03] Set ATHENA_PROC_NUMBER=8
[2026-01-10 07:41:03] Set ATHENA_CORE_NUMBER=8
[2026-01-10 07:41:04] Starting ATLAS job with PandaID=6962317296
[2026-01-10 07:41:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 13:33:09]  *** The last 200 lines of the pilot log: ***
[2026-01-10 13:33:10] 2026-01-10 12:32:02,325 | INFO     | time since job start (20801s) is within the limit (174528.0s)
[2026-01-10 13:33:10] 2026-01-10 12:32:02,461 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 13:33:10] 2026-01-10 12:32:02,462 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-10 13:33:10] 2026-01-10 12:32:02,464 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6962317296/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 13:33:10] 2026-01-10 12:32:02,465 | INFO     | extracted standard info from prmon json
[2026-01-10 13:33:10] 2026-01-10 12:32:02,465 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 13:33:10] 2026-01-10 12:32:02,465 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 13:33:10] 2026-01-10 12:32:02,465 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 13:33:10] 2026-01-10 12:32:02,465 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 13:33:10] 2026-01-10 12:32:02,472 | INFO     | fitting pss+swap vs Time
[2026-01-10 13:33:10] 2026-01-10 12:32:02,473 | INFO     | sum of square deviations: 11244975582.997086
[2026-01-10 13:33:10] 2026-01-10 12:32:02,477 | INFO     | sum of deviations: 206745432826.43512
[2026-01-10 13:33:10] 2026-01-10 12:32:02,477 | INFO     | mean x: 1768038125.0030212
[2026-01-10 13:33:10] 2026-01-10 12:32:02,477 | INFO     | mean y: 2426801.5649546827
[2026-01-10 13:33:10] 2026-01-10 12:32:02,477 | INFO     | intersect: -32503985036.277733
[2026-01-10 13:33:10] 2026-01-10 12:32:02,478 | INFO     | chi2: 7.668742154067808
[2026-01-10 13:33:10] 2026-01-10 12:32:02,478 | INFO     | sum of square deviations: 10743040895.496859
[2026-01-10 13:33:10] 2026-01-10 12:32:02,482 | INFO     | sum of deviations: 224917213468.95694
[2026-01-10 13:33:10] 2026-01-10 12:32:02,482 | INFO     | mean x: 1768037972.5030675
[2026-01-10 13:33:10] 2026-01-10 12:32:02,482 | INFO     | mean y: 2432241.542944785
[2026-01-10 13:33:10] 2026-01-10 12:32:02,482 | INFO     | intersect: -37013360395.845375
[2026-01-10 13:33:10] 2026-01-10 12:32:02,483 | INFO     | chi2: 6.9404442959664605
[2026-01-10 13:33:10] 2026-01-10 12:32:02,483 | INFO     | current chi2=6.9404442959664605 (change=9.496966301247062 %)
[2026-01-10 13:33:10] 2026-01-10 12:32:02,483 | INFO     | right removable region: 325
[2026-01-10 13:33:10] 2026-01-10 12:32:02,484 | INFO     | sum of square deviations: 10743040285.496859
[2026-01-10 13:33:10] 2026-01-10 12:32:02,487 | INFO     | sum of deviations: 91892518824.69943
[2026-01-10 13:33:10] 2026-01-10 12:32:02,487 | INFO     | mean x: 1768038277.5030675
[2026-01-10 13:33:10] 2026-01-10 12:32:02,488 | INFO     | mean y: 2461679.300613497
[2026-01-10 13:33:10] 2026-01-10 12:32:02,488 | INFO     | intersect: -15120770327.710863
[2026-01-10 13:33:10] 2026-01-10 12:32:02,488 | INFO     | chi2: 2.8852949753195842
[2026-01-10 13:33:10] 2026-01-10 12:32:02,488 | INFO     | current chi2=2.8852949753195842 (change=62.37590314874378 %)
[2026-01-10 13:33:10] 2026-01-10 12:32:02,489 | INFO     | sum of square deviations: 10256268062.996845
[2026-01-10 13:33:10] 2026-01-10 12:32:02,492 | INFO     | sum of deviations: 19106600380.831776
[2026-01-10 13:33:10] 2026-01-10 12:32:02,493 | INFO     | mean x: 1768038430.0031152
[2026-01-10 13:33:10] 2026-01-10 12:32:02,493 | INFO     | mean y: 2484418.168224299
[2026-01-10 13:33:10] 2026-01-10 12:32:02,493 | INFO     | intersect: -3291228610.0530744
[2026-01-10 13:33:10] 2026-01-10 12:32:02,493 | INFO     | chi2: 0.8835438303820231
[2026-01-10 13:33:10] 2026-01-10 12:32:02,494 | INFO     | current chi2=0.8835438303820231 (change=69.37769489983744 %)
[2026-01-10 13:33:10] 2026-01-10 12:32:02,494 | INFO     | sum of square deviations: 9784426352.996836
[2026-01-10 13:33:10] 2026-01-10 12:32:02,498 | INFO     | sum of deviations: 7003420969.031654
[2026-01-10 13:33:10] 2026-01-10 12:32:02,498 | INFO     | mean x: 1768038582.5031645
[2026-01-10 13:33:10] 2026-01-10 12:32:02,498 | INFO     | mean y: 2488336.9683544305
[2026-01-10 13:33:10] 2026-01-10 12:32:02,498 | INFO     | intersect: -1263024635.9988477
[2026-01-10 13:33:10] 2026-01-10 12:32:02,499 | INFO     | chi2: 0.8275433822499261
[2026-01-10 13:33:10] 2026-01-10 12:32:02,499 | INFO     | current chi2=0.8275433822499261 (change=6.338162998420099 %)
[2026-01-10 13:33:10] 2026-01-10 12:32:02,499 | INFO     | left removable region: 30
[2026-01-10 13:33:10] 2026-01-10 12:32:02,499 | INFO     | sum of square deviations: 7960484628.996597
[2026-01-10 13:33:10] 2026-01-10 12:32:02,502 | INFO     | sum of deviations: 13735910540.118647
[2026-01-10 13:33:10] 2026-01-10 12:32:02,503 | INFO     | mean x: 1768038857.0033898
[2026-01-10 13:33:10] 2026-01-10 12:32:02,503 | INFO     | mean y: 2499713.881355932
[2026-01-10 13:33:10] 2026-01-10 12:32:02,503 | INFO     | intersect: -3048272280.9278774
[2026-01-10 13:33:10] 2026-01-10 12:32:02,503 | INFO     | chi2: 0.001402110450910548
[2026-01-10 13:33:10] 2026-01-10 12:32:02,504 | INFO     | current memory leak: 1.73 B/s (using 295 data points, chi2=0.00)
[2026-01-10 13:33:10] 2026-01-10 12:32:02,504 | INFO     | could have reported an average CPU frequency of 2249 MHz (14 samples)
[2026-01-10 13:33:10] 2026-01-10 12:32:02,505 | INFO     | ..............................
[2026-01-10 13:33:10] 2026-01-10 12:32:02,505 | INFO     | . Timing measurements:
[2026-01-10 13:33:10] 2026-01-10 12:32:02,505 | INFO     | . get job = 0 s
[2026-01-10 13:33:10] 2026-01-10 12:32:02,505 | INFO     | . initial setup = 13 s
[2026-01-10 13:33:10] 2026-01-10 12:32:02,505 | INFO     | . payload setup = 152 s
[2026-01-10 13:33:10] 2026-01-10 12:32:02,505 | INFO     | . stage-in = 0 s
[2026-01-10 13:33:10] 2026-01-10 12:32:02,505 | INFO     | . payload execution = 20319 s
[2026-01-10 13:33:10] 2026-01-10 12:32:02,505 | INFO     | . stage-out = 4 s
[2026-01-10 13:33:10] 2026-01-10 12:32:02,505 | INFO     | . log creation = 1 s
[2026-01-10 13:33:10] 2026-01-10 12:32:02,506 | INFO     | ..............................
[2026-01-10 13:33:10] 2026-01-10 12:32:02,615 | INFO     | 
[2026-01-10 13:33:10] 2026-01-10 12:32:02,615 | INFO     | job summary report
[2026-01-10 13:33:10] 2026-01-10 12:32:02,615 | INFO     | --------------------------------------------------
[2026-01-10 13:33:10] 2026-01-10 12:32:02,615 | INFO     | PanDA job id: 6962317296
[2026-01-10 13:33:10] 2026-01-10 12:32:02,615 | INFO     | task id: 47898826
[2026-01-10 13:33:10] 2026-01-10 12:32:02,615 | INFO     | errors: (none)
[2026-01-10 13:33:10] 2026-01-10 12:32:02,615 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 13:33:10] 2026-01-10 12:32:02,615 | INFO     | pilot state: finished 
[2026-01-10 13:33:10] 2026-01-10 12:32:02,615 | INFO     | transexitcode: 0
[2026-01-10 13:33:10] 2026-01-10 12:32:02,615 | INFO     | exeerrorcode: 0
[2026-01-10 13:33:10] 2026-01-10 12:32:02,615 | INFO     | exeerrordiag: 
[2026-01-10 13:33:10] 2026-01-10 12:32:02,616 | INFO     | exitcode: 0
[2026-01-10 13:33:10] 2026-01-10 12:32:02,616 | INFO     | exitmsg: OK
[2026-01-10 13:33:10] 2026-01-10 12:32:02,616 | INFO     | cpuconsumptiontime: 75710 s
[2026-01-10 13:33:10] 2026-01-10 12:32:02,616 | INFO     | nevents: 400
[2026-01-10 13:33:10] 2026-01-10 12:32:02,616 | INFO     | neventsw: 0
[2026-01-10 13:33:10] 2026-01-10 12:32:02,616 | INFO     | pid: 16202
[2026-01-10 13:33:10] 2026-01-10 12:32:02,616 | INFO     | pgrp: 16202
[2026-01-10 13:33:10] 2026-01-10 12:32:02,616 | INFO     | corecount: 8
[2026-01-10 13:33:10] 2026-01-10 12:32:02,616 | INFO     | event service: False
[2026-01-10 13:33:10] 2026-01-10 12:32:02,616 | INFO     | sizes: {0: 2283140, 1: 2283826, 2: 2284025, 13: 2284025, 23: 2284081, 34: 2284109, 45: 2284265, 56: 2284293, 66: 2284321, 77: 2284349, 88: 2284405, 99: 2284713, 10
[2026-01-10 13:33:10] 2026-01-10 12:32:02,616 | INFO     | --------------------------------------------------
[2026-01-10 13:33:10] 2026-01-10 12:32:02,616 | INFO     | 
[2026-01-10 13:33:10] 2026-01-10 12:32:02,616 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2026-01-10 13:33:10] 2026-01-10 12:32:02,648 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,648 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,648 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,648 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,648 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,648 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,649 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,649 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,649 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,649 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,649 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,649 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,649 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,649 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,649 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,649 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,650 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,650 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 13:33:10] 2026-01-10 12:32:02,650 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,650 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 13:33:10] 2026-01-10 12:32:02,650 | INFO     | job 6962317296 has completed (purged errors)
[2026-01-10 13:33:10] 2026-01-10 12:32:02,650 | INFO     | overall cleanup function is called
[2026-01-10 13:33:10] 2026-01-10 12:32:03,659 | INFO     | --- collectZombieJob: --- 10, [16202]
[2026-01-10 13:33:10] 2026-01-10 12:32:03,660 | INFO     | zombie collector waiting for pid 16202
[2026-01-10 13:33:10] 2026-01-10 12:32:03,660 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 13:33:10] 2026-01-10 12:32:03,660 | INFO     | collected zombie processes
[2026-01-10 13:33:10] 2026-01-10 12:32:03,660 | INFO     | will attempt to kill all subprocesses of pid=16202
[2026-01-10 13:33:10] 2026-01-10 12:32:03,741 | INFO     | process IDs to be killed: [16202] (in reverse order)
[2026-01-10 13:33:10] 2026-01-10 12:32:04,998 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 13:33:10] 2026-01-10 12:32:04,998 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 13:33:10] 2026-01-10 12:32:05,001 | INFO     | did not find any defunct processes belonging to 16202
[2026-01-10 13:33:10] 2026-01-10 12:32:05,002 | INFO     | did not find any defunct processes belonging to 16202
[2026-01-10 13:33:10] 2026-01-10 12:32:05,003 | INFO     | ready for new job
[2026-01-10 13:33:10] 2026-01-10 12:32:05,003 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 13:33:10] 2026-01-10 12:32:05,005 | INFO     | ***************************************
[2026-01-10 13:33:10] 2026-01-10 12:32:05,006 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 13:33:10] 2026-01-10 12:32:05,006 | INFO     | ***************************************
[2026-01-10 13:33:10] 2026-01-10 12:32:05,006 | INFO     | 
[2026-01-10 13:33:10] 2026-01-10 12:32:05,006 | INFO     | pilot is running in a VM
[2026-01-10 13:33:10] 2026-01-10 12:32:05,007 | INFO     | architecture information:
[2026-01-10 13:33:10] 2026-01-10 12:32:05,027 | INFO     | executing command: cat /etc/os-release
[2026-01-10 13:33:10] 2026-01-10 12:32:05,413 | INFO     | cat /etc/os-release:
[2026-01-10 13:33:10] NAME="CentOS Linux"
[2026-01-10 13:33:10] VERSION="7 (Core)"
[2026-01-10 13:33:10] ID="centos"
[2026-01-10 13:33:10] ID_LIKE="rhel fedora"
[2026-01-10 13:33:10] VERSION_ID="7"
[2026-01-10 13:33:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 13:33:10] ANSI_COLOR="0;31"
[2026-01-10 13:33:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 13:33:10] HOME_URL="https://www.centos.org/"
[2026-01-10 13:33:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 13:33:10] 
[2026-01-10 13:33:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 13:33:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 13:33:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 13:33:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 13:33:10] 
[2026-01-10 13:33:10] 2026-01-10 12:32:05,413 | INFO     | ***************************************
[2026-01-10 13:33:10] 2026-01-10 12:32:05,917 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2026-01-10 13:33:10] 2026-01-10 12:32:06,245 | INFO     | sufficient remaining disk space (497165533184 B)
[2026-01-10 13:33:10] 2026-01-10 12:32:06,245 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 13:33:10] 2026-01-10 12:32:06,245 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 13:33:10] 2026-01-10 12:32:06,246 | INFO     | update_server=False
[2026-01-10 13:33:10] 2026-01-10 12:32:06,246 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 13:33:10] 2026-01-10 12:32:06,246 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 13:33:10] 2026-01-10 12:32:06,247 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:33:10] 2026-01-10 12:32:06,247 | INFO     | aborting loop
[2026-01-10 13:33:10] 2026-01-10 12:32:06,249 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 13:33:10] 2026-01-10 12:32:06,719 | INFO     | all job control threads have been joined
[2026-01-10 13:33:10] 2026-01-10 12:32:07,236 | INFO     | all data control threads have been joined
[2026-01-10 13:33:10] 2026-01-10 12:32:07,251 | INFO     | [job] retrieve thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:07,252 | INFO     | [job] job monitor thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:07,314 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:07,374 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:07,629 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:33:10] 2026-01-10 12:32:07,661 | INFO     | [data] copytool_in thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:07,694 | INFO     | all payload control threads have been joined
[2026-01-10 13:33:10] 2026-01-10 12:32:07,725 | INFO     | [job] control thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:07,858 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:07,860 | INFO     | [payload] failed_post thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:08,191 | INFO     | [job] validate thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:08,242 | INFO     | [data] control thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:08,256 | INFO     | [data] copytool_out thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:08,435 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:08,552 | INFO     | [payload] validate_post thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:08,634 | INFO     | [job] queue monitor thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:08,700 | INFO     | [payload] control thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:10,260 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 13:33:10] 2026-01-10 12:32:35,447 | INFO     | PID=9709 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 13:33:10] 2026-01-10 12:32:35,447 | INFO     | .. there are 2 such processes running
[2026-01-10 13:33:10] 2026-01-10 12:32:35,447 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 13:33:10] 2026-01-10 12:32:35,447 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 13:33:10] 2026-01-10 12:32:35,447 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 13:33:10] 2026-01-10 12:32:57,038 | INFO     | [monitor] cgroup control has ended
[2026-01-10 13:33:10] 2026-01-10 12:32:58,673 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140659420489536)>', '<ExcThread(monitor, started 140658761262848)>']
[2026-01-10 13:33:10] 2026-01-10 12:32:59,591 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 13:33:10] 2026-01-10 12:32:59,592 | INFO     | [monitor] control thread has ended
[2026-01-10 13:33:10] 2026-01-10 12:33:03,699 | INFO     | all workflow threads have been joined
[2026-01-10 13:33:10] 2026-01-10 12:33:03,700 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 13:33:10] 2026-01-10 12:33:03,700 | INFO     | traces error code: 0
[2026-01-10 13:33:10] 2026-01-10 12:33:03,700 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 13:33:10] 2026-01-10 12:33:04,062 [wrapper] ==== pilot stdout END ====
[2026-01-10 13:33:10] 2026-01-10 12:33:04,198 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 13:33:10] 2026-01-10 12:33:04,296 [wrapper] pilotpid: 9709
[2026-01-10 13:33:10] 2026-01-10 12:33:04,378 [wrapper] Pilot exit status: 0
[2026-01-10 13:33:10] 2026-01-10 12:33:04,919 [wrapper] pandaids: 6962317296
[2026-01-10 13:33:10] 2026-01-10 12:33:06,101 [wrapper] cleanup supervisor_pilot 15313 9710
[2026-01-10 13:33:10] 2026-01-10 12:33:06,182 [wrapper] Test setup, not cleaning
[2026-01-10 13:33:10] 2026-01-10 12:33:06,271 [wrapper] apfmon messages muted
[2026-01-10 13:33:10] 2026-01-10 12:33:06,384 [wrapper] ==== wrapper stdout END ====
[2026-01-10 13:33:10] 2026-01-10 12:33:06,458 [wrapper] ==== wrapper stderr END ====
[2026-01-10 13:33:10]  *** Error codes and diagnostics ***
[2026-01-10 13:33:10]     "exeErrorCode": 0,
[2026-01-10 13:33:10]     "exeErrorDiag": "",
[2026-01-10 13:33:10]     "pilotErrorCode": 0,
[2026-01-10 13:33:10]     "pilotErrorDiag": "",
[2026-01-10 13:33:10]  *** Listing of results directory ***
[2026-01-10 13:33:10] total 447636
[2026-01-10 13:33:10] -rw-r--r--. 1 boinc boinc    579449 Jan  7 21:55 pilot3.tar.gz
[2026-01-10 13:33:10] -rwx------. 1 boinc boinc     36322 Jan  7 21:56 runpilot2-wrapper.sh
[2026-01-10 13:33:10] -rw-r--r--. 1 boinc boinc      5112 Jan  7 21:59 queuedata.json
[2026-01-10 13:33:10] -rw-r--r--. 1 boinc boinc       100 Jan 10 07:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 13:33:10] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 07:40 run_atlas
[2026-01-10 13:33:10] -rw-r--r--. 1 boinc boinc       105 Jan 10 07:40 job.xml
[2026-01-10 13:33:10] -rw-r--r--. 1 boinc boinc      6389 Jan 10 07:40 init_data.xml
[2026-01-10 13:33:10] -rw-r--r--. 2 boinc boinc 226718411 Jan 10 07:40 EVNT.47898824._000531.pool.root.1
[2026-01-10 13:33:10] -rw-r--r--. 2 boinc boinc     15847 Jan 10 07:40 start_atlas.sh
[2026-01-10 13:33:10] drwxrwx--x. 2 boinc boinc        68 Jan 10 07:40 shared
[2026-01-10 13:33:10] -rw-r--r--. 2 boinc boinc    592397 Jan 10 07:40 input.tar.gz
[2026-01-10 13:33:10] -rw-r--r--. 1 boinc boinc         0 Jan 10 07:40 boinc_lockfile
[2026-01-10 13:33:10] -rw-r--r--. 1 boinc boinc      2518 Jan 10 07:41 pandaJob.out
[2026-01-10 13:33:10] -rw-------. 1 boinc boinc    989374 Jan 10 07:45 agis_schedconf.cvmfs.json
[2026-01-10 13:33:10] drwx------. 5 boinc boinc      4096 Jan 10 07:45 pilot3
[2026-01-10 13:33:10] -rw-------. 1 boinc boinc 221101120 Jan 10 13:28 HITS.47898826._012535.pool.root.1
[2026-01-10 13:33:10] -rw-r--r--. 1 boinc boinc       531 Jan 10 13:29 boinc_task_state.xml
[2026-01-10 13:33:10] -rw-------. 1 boinc boinc      1011 Jan 10 13:30 memory_monitor_summary.json
[2026-01-10 13:33:10] -rw-------. 1 boinc boinc   1516240 Jan 10 13:30 agis_ddmendpoints.agis.ALL.json
[2026-01-10 13:33:10] -rw-------. 1 boinc boinc    550690 Jan 10 13:30 log.47898826._012535.job.log.tgz.1
[2026-01-10 13:33:10] -rw-------. 1 boinc boinc        95 Jan 10 13:32 pilot_heartbeat.json
[2026-01-10 13:33:10] -rw-------. 1 boinc boinc      7776 Jan 10 13:32 heartbeat.json
[2026-01-10 13:33:10] -rw-r--r--. 1 boinc boinc        28 Jan 10 13:32 wrapper_checkpoint.txt
[2026-01-10 13:33:10] -rw-r--r--. 1 boinc boinc      8192 Jan 10 13:32 boinc_mmap_file
[2026-01-10 13:33:10] -rw-------. 1 boinc boinc      4884 Jan 10 13:33 pilotlog.txt
[2026-01-10 13:33:10] -rw-------. 1 boinc boinc   2780376 Jan 10 13:33 log.47898826._012535.job.log.1
[2026-01-10 13:33:10] -rw-------. 1 boinc boinc       357 Jan 10 13:33 output.list
[2026-01-10 13:33:10] -rw-r--r--. 1 boinc boinc       620 Jan 10 13:33 runtime_log
[2026-01-10 13:33:10] -rw-------. 1 boinc boinc   3348480 Jan 10 13:33 result.tar.gz
[2026-01-10 13:33:10] -rw-r--r--. 1 boinc boinc      8833 Jan 10 13:33 runtime_log.err
[2026-01-10 13:33:10] -rw-------. 1 boinc boinc       657 Jan 10 13:33 2XiKDmBlpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZedKDm7MJ4Km.diag
[2026-01-10 13:33:10] -rw-r--r--. 1 boinc boinc     20799 Jan 10 13:33 stderr.txt
[2026-01-10 13:33:10] HITS file was successfully produced:
[2026-01-10 13:33:10] -rw-------. 1 boinc boinc 221101120 Jan 10 13:28 shared/HITS.pool.root.1
[2026-01-10 13:33:10]  *** Contents of shared directory: ***
[2026-01-10 13:33:10] total 441196
[2026-01-10 13:33:10] -rw-r--r--. 2 boinc boinc 226718411 Jan 10 07:40 ATLAS.root_0
[2026-01-10 13:33:10] -rw-r--r--. 2 boinc boinc     15847 Jan 10 07:40 start_atlas.sh
[2026-01-10 13:33:10] -rw-r--r--. 2 boinc boinc    592397 Jan 10 07:40 input.tar.gz
[2026-01-10 13:33:10] -rw-------. 1 boinc boinc 221101120 Jan 10 13:28 HITS.pool.root.1
[2026-01-10 13:33:10] -rw-------. 1 boinc boinc   3348480 Jan 10 13:33 result.tar.gz
13:33:11 (5948): run_atlas exited; CPU time 75897.984736
13:33:11 (5948): called boinc_finish(0)

</stderr_txt>
]]>

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