Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:06:16 (1700810): wrapper (7.7.26015): starting
13:06:16 (1700810): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 13:06:16] Arguments: --nthreads 4
[2026-01-10 13:06:16] Threads: 4
[2026-01-10 13:06:16] Checking for CVMFS
[2026-01-10 13:06:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 13:06:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 13:06:16] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 13:06:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 13:06:17] 2.9.2.0 569242 4090 96524 154979 2 56 21276260 36864001 0 130560 0 3009874 99.989 151275 3529 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 13:06:17] CVMFS is ok
[2026-01-10 13:06:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 13:06:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 13:06:17] Further information can be found at the LHC@home message board.
[2026-01-10 13:06:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 13:06:17] Checking for apptainer binary...
[2026-01-10 13:06:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 13:06:17] Running /usr/bin/apptainer --version
[2026-01-10 13:06:17] apptainer version 1.4.1-1.1
[2026-01-10 13:06:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 13:06:17] thA369a
[2026-01-10 13:06:17] apptainer works
[2026-01-10 13:06:17] Set ATHENA_PROC_NUMBER=4
[2026-01-10 13:06:17] Set ATHENA_CORE_NUMBER=4
[2026-01-10 13:06:17] Starting ATLAS job with PandaID=6963195763
[2026-01-10 13:06:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 16:21:42]  *** The last 200 lines of the pilot log: ***
[2026-01-10 16:21:42] 2026-01-10 15:20:56,591 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 16:21:42] 2026-01-10 15:20:56,591 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 16:21:42] 2026-01-10 15:20:56,591 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 16:21:42] 2026-01-10 15:20:56,592 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 16:21:42] 2026-01-10 15:20:56,592 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 16:21:42] 2026-01-10 15:20:56,592 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 16:21:42] 2026-01-10 15:20:56,592 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 16:21:42] 2026-01-10 15:20:56,592 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 16:21:42] 2026-01-10 15:20:56,592 | INFO     | job 6963195763 has completed (purged errors)
[2026-01-10 16:21:42] 2026-01-10 15:20:56,592 | INFO     | overall cleanup function is called
[2026-01-10 16:21:42] 2026-01-10 15:20:57,601 | INFO     | --- collectZombieJob: --- 10, [1711132]
[2026-01-10 16:21:42] 2026-01-10 15:20:57,602 | INFO     | zombie collector waiting for pid 1711132
[2026-01-10 16:21:42] 2026-01-10 15:20:57,602 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 16:21:42] 2026-01-10 15:20:57,602 | INFO     | collected zombie processes
[2026-01-10 16:21:42] 2026-01-10 15:20:57,602 | INFO     | will attempt to kill all subprocesses of pid=1711132
[2026-01-10 16:21:42] 2026-01-10 15:20:57,646 | INFO     | process IDs to be killed: [1711132] (in reverse order)
[2026-01-10 16:21:42] 2026-01-10 15:20:57,671 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 16:21:42] 2026-01-10 15:20:57,671 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 16:21:42] 2026-01-10 15:20:57,673 | INFO     | did not find any defunct processes belonging to 1711132
[2026-01-10 16:21:42] 2026-01-10 15:20:57,674 | INFO     | did not find any defunct processes belonging to 1711132
[2026-01-10 16:21:42] 2026-01-10 15:20:57,674 | INFO     | ready for new job
[2026-01-10 16:21:42] 2026-01-10 15:20:57,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 16:21:42] 2026-01-10 15:20:57,675 | INFO     | ***************************************
[2026-01-10 16:21:42] 2026-01-10 15:20:57,675 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 16:21:42] 2026-01-10 15:20:57,675 | INFO     | ***************************************
[2026-01-10 16:21:42] 2026-01-10 15:20:57,675 | INFO     | 
[2026-01-10 16:21:42] 2026-01-10 15:20:57,675 | INFO     | architecture information:
[2026-01-10 16:21:42] 2026-01-10 15:20:57,675 | INFO     | executing command: cat /etc/os-release
[2026-01-10 16:21:42] 2026-01-10 15:20:57,684 | INFO     | cat /etc/os-release:
[2026-01-10 16:21:42] NAME="CentOS Linux"
[2026-01-10 16:21:42] VERSION="7 (Core)"
[2026-01-10 16:21:42] ID="centos"
[2026-01-10 16:21:42] ID_LIKE="rhel fedora"
[2026-01-10 16:21:42] VERSION_ID="7"
[2026-01-10 16:21:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 16:21:42] ANSI_COLOR="0;31"
[2026-01-10 16:21:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 16:21:42] HOME_URL="https://www.centos.org/"
[2026-01-10 16:21:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 16:21:42] 
[2026-01-10 16:21:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 16:21:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 16:21:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 16:21:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 16:21:42] 
[2026-01-10 16:21:42] 2026-01-10 15:20:57,684 | INFO     | ***************************************
[2026-01-10 16:21:42] 2026-01-10 15:20:58,188 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 16:21:42] 2026-01-10 15:20:58,200 | INFO     | sufficient remaining disk space (238836252672 B)
[2026-01-10 16:21:42] 2026-01-10 15:20:58,200 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 16:21:42] 2026-01-10 15:20:58,200 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 16:21:42] 2026-01-10 15:20:58,200 | INFO     | update_server=False
[2026-01-10 16:21:42] 2026-01-10 15:20:58,200 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 16:21:42] 2026-01-10 15:20:58,244 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:21:42] 2026-01-10 15:20:58,244 | INFO     | aborting loop
[2026-01-10 16:21:42] 2026-01-10 15:20:58,342 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 16:21:42] 2026-01-10 15:20:58,391 | INFO     | all data control threads have been joined
[2026-01-10 16:21:42] 2026-01-10 15:20:58,866 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 16:21:42] 2026-01-10 15:20:59,029 | INFO     | all job control threads have been joined
[2026-01-10 16:21:42] 2026-01-10 15:20:59,206 | INFO     | [job] retrieve thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:20:59,250 | INFO     | [job] job monitor thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:20:59,325 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:20:59,397 | INFO     | [data] control thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:20:59,423 | INFO     | [payload] validate_post thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:20:59,567 | INFO     | all payload control threads have been joined
[2026-01-10 16:21:42] 2026-01-10 15:21:00,034 | INFO     | [job] control thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:21:00,085 | INFO     | [data] copytool_in thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:21:00,348 | INFO     | [data] copytool_out thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:21:00,461 | INFO     | [payload] failed_post thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:21:00,498 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:21:00,573 | INFO     | [payload] control thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:21:00,607 | INFO     | [job] validate thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:21:00,608 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:21:01,134 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:21:42] 2026-01-10 15:21:02,140 | INFO     | [job] queue monitor thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:21:02,873 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:21:08,569 | INFO     | job.realtimelogging is not enabled
[2026-01-10 16:21:42] 2026-01-10 15:21:09,575 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 16:21:42] 2026-01-10 15:21:21,550 [wrapper] supervise_pilot (15 min periods counter: 14)
[2026-01-10 16:21:42] 2026-01-10 15:21:27,793 | INFO     | PID=1704592 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 16:21:42] 2026-01-10 15:21:27,794 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 16:21:42] 2026-01-10 15:21:27,794 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 16:21:42] 2026-01-10 15:21:27,794 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 16:21:42] 2026-01-10 15:21:36,542 | INFO     | [monitor] cgroup control has ended
[2026-01-10 16:21:42] 2026-01-10 15:21:37,352 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140291333560128)>', '<ExcThread(monitor, started 140290543318784)>']
[2026-01-10 16:21:42] 2026-01-10 15:21:37,842 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 16:21:42] 2026-01-10 15:21:37,842 | INFO     | [monitor] control thread has ended
[2026-01-10 16:21:42] 2026-01-10 15:21:42,378 | INFO     | all workflow threads have been joined
[2026-01-10 16:21:42] 2026-01-10 15:21:42,378 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 16:21:42] 2026-01-10 15:21:42,378 | INFO     | traces error code: 0
[2026-01-10 16:21:42] 2026-01-10 15:21:42,378 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 16:21:42] 2026-01-10 15:21:42,432 [wrapper] ==== pilot stdout END ====
[2026-01-10 16:21:42] 2026-01-10 15:21:42,434 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 16:21:42] 2026-01-10 15:21:42,437 [wrapper] pilotpid: 1704592
[2026-01-10 16:21:42] 2026-01-10 15:21:42,439 [wrapper] Pilot exit status: 0
[2026-01-10 16:21:42] 2026-01-10 15:21:42,446 [wrapper] pandaids: 6963195763
[2026-01-10 16:21:42] 2026-01-10 15:21:42,462 [wrapper] cleanup supervisor_pilot 1736638 1704593
[2026-01-10 16:21:42] 2026-01-10 15:21:42,465 [wrapper] Test setup, not cleaning
[2026-01-10 16:21:42] 2026-01-10 15:21:42,467 [wrapper] apfmon messages muted
[2026-01-10 16:21:42] 2026-01-10 15:21:42,470 [wrapper] ==== wrapper stdout END ====
[2026-01-10 16:21:42] 2026-01-10 15:21:42,472 [wrapper] ==== wrapper stderr END ====
[2026-01-10 16:21:42]  *** Error codes and diagnostics ***
[2026-01-10 16:21:42]     "exeErrorCode": 0,
[2026-01-10 16:21:42]     "exeErrorDiag": "",
[2026-01-10 16:21:42]     "pilotErrorCode": 0,
[2026-01-10 16:21:42]     "pilotErrorDiag": "",
[2026-01-10 16:21:42]  *** Listing of results directory ***
[2026-01-10 16:21:42] total 780208
[2026-01-10 16:21:42] -rw-r--r-- 1 boinc boinc    579449 Jan  9 08:13 pilot3.tar.gz
[2026-01-10 16:21:42] -rwx------ 1 boinc boinc     36322 Jan  9 08:13 runpilot2-wrapper.sh
[2026-01-10 16:21:42] -rw-r--r-- 1 boinc boinc      5112 Jan  9 08:13 queuedata.json
[2026-01-10 16:21:42] -rw-r--r-- 1 boinc boinc       100 Jan 10 13:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 16:21:42] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 13:06 run_atlas
[2026-01-10 16:21:42] -rw-r--r-- 1 boinc boinc       105 Jan 10 13:06 job.xml
[2026-01-10 16:21:42] -rw-r--r-- 2 boinc boinc 392494414 Jan 10 13:06 EVNT.47962006._000057.pool.root.1
[2026-01-10 16:21:42] -rw-r--r-- 2 boinc boinc    592610 Jan 10 13:06 input.tar.gz
[2026-01-10 16:21:42] -rw-r--r-- 2 boinc boinc     15847 Jan 10 13:06 start_atlas.sh
[2026-01-10 16:21:42] drwxrwx--x 2 boinc boinc      4096 Jan 10 13:06 shared
[2026-01-10 16:21:42] -rw-r--r-- 1 boinc boinc         0 Jan 10 13:06 boinc_setup_complete
[2026-01-10 16:21:42] -rw-r--r-- 1 boinc boinc      6443 Jan 10 13:06 init_data.xml
[2026-01-10 16:21:42] -rw-r--r-- 1 boinc boinc         0 Jan 10 13:06 boinc_lockfile
[2026-01-10 16:21:42] -rw-r--r-- 1 boinc boinc      2891 Jan 10 13:06 pandaJob.out
[2026-01-10 16:21:42] -rw------- 1 boinc boinc    989564 Jan 10 13:06 agis_schedconf.cvmfs.json
[2026-01-10 16:21:42] drwx------ 5 boinc boinc      4096 Jan 10 13:06 pilot3
[2026-01-10 16:21:42] -rw-r--r-- 1 boinc boinc       531 Jan 10 16:18 boinc_task_state.xml
[2026-01-10 16:21:42] -rw------- 1 boinc boinc 397284831 Jan 10 16:20 HITS.47962010._000594.pool.root.1
[2026-01-10 16:21:42] -rw------- 1 boinc boinc      1018 Jan 10 16:20 memory_monitor_summary.json
[2026-01-10 16:21:42] -rw------- 1 boinc boinc   1516240 Jan 10 16:20 agis_ddmendpoints.agis.ALL.json
[2026-01-10 16:21:42] -rw------- 1 boinc boinc    954683 Jan 10 16:20 log.47962010._000594.job.log.tgz.1
[2026-01-10 16:21:42] -rw------- 1 boinc boinc      8548 Jan 10 16:20 heartbeat.json
[2026-01-10 16:21:42] -rw------- 1 boinc boinc        95 Jan 10 16:21 pilot_heartbeat.json
[2026-01-10 16:21:42] -rw-r--r-- 1 boinc boinc      8192 Jan 10 16:21 boinc_mmap_file
[2026-01-10 16:21:42] -rw-r--r-- 1 boinc boinc        28 Jan 10 16:21 wrapper_checkpoint.txt
[2026-01-10 16:21:42] -rw------- 1 boinc boinc      4824 Jan 10 16:21 pilotlog.txt
[2026-01-10 16:21:42] -rw------- 1 boinc boinc   1670277 Jan 10 16:21 log.47962010._000594.job.log.1
[2026-01-10 16:21:42] -rw------- 1 boinc boinc       353 Jan 10 16:21 output.list
[2026-01-10 16:21:42] -rw-r--r-- 1 boinc boinc       620 Jan 10 16:21 runtime_log
[2026-01-10 16:21:42] -rw------- 1 boinc boinc   2641920 Jan 10 16:21 result.tar.gz
[2026-01-10 16:21:42] -rw------- 1 boinc boinc       664 Jan 10 16:21 t8aKDm4rLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtQmKDmTpLFNo.diag
[2026-01-10 16:21:42] -rw-r--r-- 1 boinc boinc      8903 Jan 10 16:21 runtime_log.err
[2026-01-10 16:21:42] -rw-r--r-- 1 boinc boinc     11815 Jan 10 16:21 stderr.txt
[2026-01-10 16:21:42] HITS file was successfully produced:
[2026-01-10 16:21:42] -rw------- 1 boinc boinc 397284831 Jan 10 16:20 shared/HITS.pool.root.1
[2026-01-10 16:21:42]  *** Contents of shared directory: ***
[2026-01-10 16:21:42] total 774456
[2026-01-10 16:21:42] -rw-r--r-- 2 boinc boinc 392494414 Jan 10 13:06 ATLAS.root_0
[2026-01-10 16:21:42] -rw-r--r-- 2 boinc boinc    592610 Jan 10 13:06 input.tar.gz
[2026-01-10 16:21:42] -rw-r--r-- 2 boinc boinc     15847 Jan 10 13:06 start_atlas.sh
[2026-01-10 16:21:42] -rw------- 1 boinc boinc 397284831 Jan 10 16:20 HITS.pool.root.1
[2026-01-10 16:21:42] -rw------- 1 boinc boinc   2641920 Jan 10 16:21 result.tar.gz
16:21:43 (1700810): run_atlas exited; CPU time 44797.688348
16:21:43 (1700810): called boinc_finish(0)

</stderr_txt>
]]>

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