Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:08:46 (23553): wrapper (7.7.26015): starting
09:08:46 (23553): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 09:08:46] Arguments: --nthreads 8
[2026-01-10 09:08:46] Threads: 8
[2026-01-10 09:08:46] Checking for CVMFS
[2026-01-10 09:08:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 09:08:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 09:08:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 09:08:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 09:08:49] 2.11.2.0 7147 36594 103492 154972 0 61 14596122 25165824 899 130560 0 15307555 99.801 10681859 3696 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 09:08:49] CVMFS is ok
[2026-01-10 09:08:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 09:08:49] Checking for apptainer binary...
[2026-01-10 09:08:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 09:08:49] Running /usr/bin/apptainer --version
[2026-01-10 09:08:49] apptainer version 1.3.2-1.el7
[2026-01-10 09:08:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 09:09:15] cg-vwn412.simple-grid.lan
[2026-01-10 09:09:15] apptainer works
[2026-01-10 09:09:15] Set ATHENA_PROC_NUMBER=8
[2026-01-10 09:09:15] Set ATHENA_CORE_NUMBER=8
[2026-01-10 09:09:16] Starting ATLAS job with PandaID=6963076776
[2026-01-10 09:09:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 23:27:25]  *** The last 200 lines of the pilot log: ***
[2026-01-10 23:27:25] 2026-01-10 22:26:35,548 | INFO     | time since job start (51188s) is within the limit (174528.0s)
[2026-01-10 23:27:25] 2026-01-10 22:26:37,559 | INFO     | time since job start (51190s) is within the limit (174528.0s)
[2026-01-10 23:27:25] 2026-01-10 22:26:37,802 | INFO     | monitor loop #3519: job 0:6963076776 is in state 'finished'
[2026-01-10 23:27:25] 2026-01-10 22:26:37,802 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 23:27:25] 2026-01-10 22:26:39,566 | INFO     | time since job start (51192s) is within the limit (174528.0s)
[2026-01-10 23:27:25] 2026-01-10 22:26:40,309 | INFO     | monitor loop #3520: job 0:6963076776 is in state 'finished'
[2026-01-10 23:27:25] 2026-01-10 22:26:40,309 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 23:27:25] 2026-01-10 22:26:41,579 | INFO     | time since job start (51194s) is within the limit (174528.0s)
[2026-01-10 23:27:25] 2026-01-10 22:26:42,708 | INFO     | PID=27288 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 23:27:25] 2026-01-10 22:26:42,708 | INFO     | .. there are 2 such processes running
[2026-01-10 23:27:25] 2026-01-10 22:26:42,813 | INFO     | monitor loop #3521: job 0:6963076776 is in state 'finished'
[2026-01-10 23:27:25] 2026-01-10 22:26:42,813 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 23:27:25] 2026-01-10 22:26:43,709 | INFO     | time since job start (51196s) is within the limit (174528.0s)
[2026-01-10 23:27:25] 2026-01-10 22:26:45,321 | INFO     | monitor loop #3522: job 0:6963076776 is in state 'finished'
[2026-01-10 23:27:25] 2026-01-10 22:26:45,321 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 23:27:25] 2026-01-10 22:26:45,720 | INFO     | time since job start (51198s) is within the limit (174528.0s)
[2026-01-10 23:27:25] 2026-01-10 22:26:47,238 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 23:27:25] 2026-01-10 22:26:47,239 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-10 23:27:25] 2026-01-10 22:26:47,241 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6963076776/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 23:27:25] 2026-01-10 22:26:47,241 | INFO     | extracted standard info from prmon json
[2026-01-10 23:27:25] 2026-01-10 22:26:47,242 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 23:27:25] 2026-01-10 22:26:47,242 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 23:27:25] 2026-01-10 22:26:47,259 | INFO     | fitting pss+swap vs Time
[2026-01-10 23:27:25] 2026-01-10 22:26:47,260 | INFO     | sum of square deviations: 176661498486.56424
[2026-01-10 23:27:25] 2026-01-10 22:26:47,280 | INFO     | sum of deviations: 1375640901335.684
[2026-01-10 23:27:25] 2026-01-10 22:26:47,281 | INFO     | mean x: 1768058641.0229192
[2026-01-10 23:27:25] 2026-01-10 22:26:47,281 | INFO     | mean y: 2627897.700844391
[2026-01-10 23:27:25] 2026-01-10 22:26:47,281 | INFO     | intersect: -13765022684.840162
[2026-01-10 23:27:25] 2026-01-10 22:26:47,282 | INFO     | chi2: 41.953620060796695
[2026-01-10 23:27:25] 2026-01-10 22:26:47,283 | INFO     | sum of square deviations: 173484469641.3012
[2026-01-10 23:27:25] 2026-01-10 22:26:47,303 | INFO     | sum of deviations: 1634245739774.6504
[2026-01-10 23:27:25] 2026-01-10 22:26:47,304 | INFO     | mean x: 1768058488.5291262
[2026-01-10 23:27:25] 2026-01-10 22:26:47,304 | INFO     | mean y: 2640309.764563107
[2026-01-10 23:27:25] 2026-01-10 22:26:47,304 | INFO     | intersect: -16652695228.484947
[2026-01-10 23:27:25] 2026-01-10 22:26:47,305 | INFO     | chi2: 38.431136080009125
[2026-01-10 23:27:25] 2026-01-10 22:26:47,305 | INFO     | current chi2=38.431136080009125 (change=8.396138344397922 %)
[2026-01-10 23:27:25] 2026-01-10 22:26:47,305 | INFO     | right removable region: 823
[2026-01-10 23:27:25] 2026-01-10 22:26:47,307 | INFO     | sum of square deviations: 173483952361.30136
[2026-01-10 23:27:25] 2026-01-10 22:26:47,326 | INFO     | sum of deviations: 1044505204037.0765
[2026-01-10 23:27:25] 2026-01-10 22:26:47,326 | INFO     | mean x: 1768058793.5291262
[2026-01-10 23:27:25] 2026-01-10 22:26:47,327 | INFO     | mean y: 2643790.580097087
[2026-01-10 23:27:25] 2026-01-10 22:26:47,327 | INFO     | intersect: -10642413494.249416
[2026-01-10 23:27:25] 2026-01-10 22:26:47,328 | INFO     | chi2: 36.56095949190991
[2026-01-10 23:27:25] 2026-01-10 22:26:47,328 | INFO     | current chi2=36.56095949190991 (change=12.853862339106993 %)
[2026-01-10 23:27:25] 2026-01-10 22:26:47,328 | INFO     | left removable region: 10
[2026-01-10 23:27:25] 2026-01-10 22:26:47,329 | INFO     | sum of square deviations: 166628552749.49298
[2026-01-10 23:27:25] 2026-01-10 22:26:47,349 | INFO     | sum of deviations: 1050094938788.1392
[2026-01-10 23:27:25] 2026-01-10 22:26:47,349 | INFO     | mean x: 1768058763.0430505
[2026-01-10 23:27:25] 2026-01-10 22:26:47,349 | INFO     | mean y: 2674330.6531365314
[2026-01-10 23:27:25] 2026-01-10 22:26:47,349 | INFO     | intersect: -11139651086.664482
[2026-01-10 23:27:25] 2026-01-10 22:26:47,350 | INFO     | chi2: 27.60597833818938
[2026-01-10 23:27:25] 2026-01-10 22:26:47,351 | INFO     | current memory leak: 6.30 B/s (using 813 data points, chi2=27.61)
[2026-01-10 23:27:25] 2026-01-10 22:26:47,352 | INFO     | could have reported an average CPU frequency of 1999 MHz (29 samples)
[2026-01-10 23:27:25] 2026-01-10 22:26:47,352 | INFO     | ..............................
[2026-01-10 23:27:25] 2026-01-10 22:26:47,352 | INFO     | . Timing measurements:
[2026-01-10 23:27:25] 2026-01-10 22:26:47,352 | INFO     | . get job = 0 s
[2026-01-10 23:27:25] 2026-01-10 22:26:47,352 | INFO     | . initial setup = 11 s
[2026-01-10 23:27:25] 2026-01-10 22:26:47,352 | INFO     | . payload setup = 189 s
[2026-01-10 23:27:25] 2026-01-10 22:26:47,352 | INFO     | . stage-in = 0 s
[2026-01-10 23:27:25] 2026-01-10 22:26:47,353 | INFO     | . payload execution = 50677 s
[2026-01-10 23:27:25] 2026-01-10 22:26:47,353 | INFO     | . stage-out = 5 s
[2026-01-10 23:27:25] 2026-01-10 22:26:47,353 | INFO     | . log creation = 2 s
[2026-01-10 23:27:25] 2026-01-10 22:26:47,353 | INFO     | ..............................
[2026-01-10 23:27:25] 2026-01-10 22:26:47,571 | INFO     | 
[2026-01-10 23:27:25] 2026-01-10 22:26:47,571 | INFO     | job summary report
[2026-01-10 23:27:25] 2026-01-10 22:26:47,571 | INFO     | --------------------------------------------------
[2026-01-10 23:27:25] 2026-01-10 22:26:47,571 | INFO     | PanDA job id: 6963076776
[2026-01-10 23:27:25] 2026-01-10 22:26:47,571 | INFO     | task id: 47962010
[2026-01-10 23:27:25] 2026-01-10 22:26:47,571 | INFO     | errors: (none)
[2026-01-10 23:27:25] 2026-01-10 22:26:47,572 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 23:27:25] 2026-01-10 22:26:47,572 | INFO     | pilot state: finished 
[2026-01-10 23:27:25] 2026-01-10 22:26:47,572 | INFO     | transexitcode: 0
[2026-01-10 23:27:25] 2026-01-10 22:26:47,572 | INFO     | exeerrorcode: 0
[2026-01-10 23:27:25] 2026-01-10 22:26:47,572 | INFO     | exeerrordiag: 
[2026-01-10 23:27:25] 2026-01-10 22:26:47,572 | INFO     | exitcode: 0
[2026-01-10 23:27:25] 2026-01-10 22:26:47,572 | INFO     | exitmsg: OK
[2026-01-10 23:27:25] 2026-01-10 22:26:47,572 | INFO     | cpuconsumptiontime: 183081 s
[2026-01-10 23:27:25] 2026-01-10 22:26:47,572 | INFO     | nevents: 450
[2026-01-10 23:27:25] 2026-01-10 22:26:47,573 | INFO     | neventsw: 0
[2026-01-10 23:27:25] 2026-01-10 22:26:47,573 | INFO     | pid: 1354
[2026-01-10 23:27:25] 2026-01-10 22:26:47,573 | INFO     | pgrp: 1354
[2026-01-10 23:27:25] 2026-01-10 22:26:47,573 | INFO     | corecount: 8
[2026-01-10 23:27:25] 2026-01-10 22:26:47,573 | INFO     | event service: False
[2026-01-10 23:27:25] 2026-01-10 22:26:47,573 | INFO     | sizes: {0: 2284339, 1: 2284594, 12: 2284594, 23: 2284622, 33: 2284650, 44: 2284706, 55: 2284862, 66: 2284890, 76: 2284918, 87: 2284974, 98: 2285002, 109: 2285628, 
[2026-01-10 23:27:25] 2026-01-10 22:26:47,573 | INFO     | --------------------------------------------------
[2026-01-10 23:27:25] 2026-01-10 22:26:47,573 | INFO     | 
[2026-01-10 23:27:25] 2026-01-10 22:26:47,574 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-01-10 23:27:25] 2026-01-10 22:26:47,727 | INFO     | time since job start (51200s) is within the limit (174528.0s)
[2026-01-10 23:27:25] 2026-01-10 22:26:48,191 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,192 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,192 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,192 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,192 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,192 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,192 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,192 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,192 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,193 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,193 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,193 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,193 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,193 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,193 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,193 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,193 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,193 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 23:27:25] 2026-01-10 22:26:48,194 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,194 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 23:27:25] 2026-01-10 22:26:48,194 | INFO     | job 6963076776 has completed (purged errors)
[2026-01-10 23:27:25] 2026-01-10 22:26:48,194 | INFO     | overall cleanup function is called
[2026-01-10 23:27:25] 2026-01-10 22:26:49,216 | INFO     | --- collectZombieJob: --- 10, [1354]
[2026-01-10 23:27:25] 2026-01-10 22:26:49,216 | INFO     | zombie collector waiting for pid 1354
[2026-01-10 23:27:25] 2026-01-10 22:26:49,216 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 23:27:25] 2026-01-10 22:26:49,216 | INFO     | collected zombie processes
[2026-01-10 23:27:25] 2026-01-10 22:26:49,216 | INFO     | will attempt to kill all subprocesses of pid=1354
[2026-01-10 23:27:25] 2026-01-10 22:26:49,315 | INFO     | process IDs to be killed: [1354] (in reverse order)
[2026-01-10 23:27:25] 2026-01-10 22:26:50,260 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 23:27:25] 2026-01-10 22:26:50,261 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 23:27:25] 2026-01-10 22:26:50,263 | INFO     | did not find any defunct processes belonging to 1354
[2026-01-10 23:27:25] 2026-01-10 22:26:50,265 | INFO     | did not find any defunct processes belonging to 1354
[2026-01-10 23:27:25] 2026-01-10 22:26:50,265 | INFO     | ready for new job
[2026-01-10 23:27:25] 2026-01-10 22:26:50,265 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 23:27:25] 2026-01-10 22:26:50,269 | INFO     | ***************************************
[2026-01-10 23:27:25] 2026-01-10 22:26:50,269 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 23:27:25] 2026-01-10 22:26:50,269 | INFO     | ***************************************
[2026-01-10 23:27:25] 2026-01-10 22:26:50,269 | INFO     | 
[2026-01-10 23:27:25] 2026-01-10 22:26:50,270 | INFO     | pilot is running in a VM
[2026-01-10 23:27:25] 2026-01-10 22:26:50,270 | INFO     | architecture information:
[2026-01-10 23:27:25] 2026-01-10 22:26:50,281 | INFO     | executing command: cat /etc/os-release
[2026-01-10 23:27:25] 2026-01-10 22:26:50,572 | INFO     | cat /etc/os-release:
[2026-01-10 23:27:25] NAME="CentOS Linux"
[2026-01-10 23:27:25] VERSION="7 (Core)"
[2026-01-10 23:27:25] ID="centos"
[2026-01-10 23:27:25] ID_LIKE="rhel fedora"
[2026-01-10 23:27:25] VERSION_ID="7"
[2026-01-10 23:27:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 23:27:25] ANSI_COLOR="0;31"
[2026-01-10 23:27:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 23:27:25] HOME_URL="https://www.centos.org/"
[2026-01-10 23:27:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 23:27:25] 
[2026-01-10 23:27:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 23:27:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 23:27:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 23:27:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 23:27:25] 
[2026-01-10 23:27:25] 2026-01-10 22:26:50,572 | INFO     | ***************************************
[2026-01-10 23:27:25] 2026-01-10 22:26:51,076 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-01-10 23:27:25] 2026-01-10 22:26:51,403 | INFO     | sufficient remaining disk space (496968400896 B)
[2026-01-10 23:27:25] 2026-01-10 22:26:51,403 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 23:27:25] 2026-01-10 22:26:51,404 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 23:27:25] 2026-01-10 22:26:51,404 | INFO     | update_server=False
[2026-01-10 23:27:25] 2026-01-10 22:26:51,404 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 23:27:25] 2026-01-10 22:26:51,405 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 23:27:25] 2026-01-10 22:26:51,405 | INFO     | aborting loop
[2026-01-10 23:27:25] 2026-01-10 22:26:51,410 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 23:27:25] 2026-01-10 22:26:51,732 | INFO     | all data control threads have been joined
[2026-01-10 23:27:25] 2026-01-10 22:26:51,998 | INFO     | all payload control threads have been joined
[2026-01-10 23:27:25] 2026-01-10 22:26:52,410 | INFO     | [job] retrieve thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:52,414 | INFO     | [job] job monitor thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:52,487 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:52,502 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 23:27:25] 2026-01-10 22:26:52,531 | INFO     | [payload] validate_post thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:52,738 | INFO     | [data] control thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:52,741 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:52,805 | INFO     | all job control threads have been joined
[2026-01-10 23:27:25] 2026-01-10 22:26:52,941 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 23:27:25] 2026-01-10 22:26:53,004 | INFO     | [payload] control thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:53,004 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:53,286 | INFO     | [job] validate thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:53,400 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:53,417 | INFO     | [data] copytool_out thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:53,508 | INFO     | [job] queue monitor thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:53,548 | INFO     | [data] copytool_in thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:53,811 | INFO     | [job] control thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:53,989 | INFO     | [payload] failed_post thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:56,277 | INFO     | [monitor] cgroup control has ended
[2026-01-10 23:27:25] 2026-01-10 22:26:56,950 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 23:27:25] 2026-01-10 22:26:58,496 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139930809030464)>', '<ExcThread(monitor, started 139930235827968)>']
[2026-01-10 23:27:25] 2026-01-10 22:27:03,522 | INFO     | all workflow threads have been joined
[2026-01-10 23:27:25] 2026-01-10 22:27:03,522 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 23:27:25] 2026-01-10 22:27:03,522 | INFO     | traces error code: 0
[2026-01-10 23:27:25] 2026-01-10 22:27:03,523 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 23:27:25] 2026-01-10 22:27:20,866 | INFO     | PID=27288 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 23:27:25] 2026-01-10 22:27:20,867 | INFO     | .. there are 2 such processes running
[2026-01-10 23:27:25] 2026-01-10 22:27:20,867 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 23:27:25] 2026-01-10 22:27:20,867 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 23:27:25] 2026-01-10 22:27:20,867 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 23:27:25] 2026-01-10 22:27:20,867 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 23:27:25] 2026-01-10 22:27:20,868 | INFO     | [monitor] control thread has ended
[2026-01-10 23:27:25] 2026-01-10 22:27:21,343 [wrapper] ==== pilot stdout END ====
[2026-01-10 23:27:25] 2026-01-10 22:27:21,448 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 23:27:25] 2026-01-10 22:27:21,514 [wrapper] pilotpid: 27288
[2026-01-10 23:27:25] 2026-01-10 22:27:21,611 [wrapper] Pilot exit status: 0
[2026-01-10 23:27:25] 2026-01-10 22:27:21,956 [wrapper] pandaids: 6963076776
[2026-01-10 23:27:25] 2026-01-10 22:27:22,951 [wrapper] cleanup supervisor_pilot 19856 27289
[2026-01-10 23:27:25] 2026-01-10 22:27:23,003 [wrapper] Test setup, not cleaning
[2026-01-10 23:27:25] 2026-01-10 22:27:23,084 [wrapper] apfmon messages muted
[2026-01-10 23:27:25] 2026-01-10 22:27:23,168 [wrapper] ==== wrapper stdout END ====
[2026-01-10 23:27:25] 2026-01-10 22:27:23,266 [wrapper] ==== wrapper stderr END ====
[2026-01-10 23:27:25]  *** Error codes and diagnostics ***
[2026-01-10 23:27:25]     "exeErrorCode": 0,
[2026-01-10 23:27:25]     "exeErrorDiag": "",
[2026-01-10 23:27:25]     "pilotErrorCode": 0,
[2026-01-10 23:27:25]     "pilotErrorDiag": "",
[2026-01-10 23:27:25]  *** Listing of results directory ***
[2026-01-10 23:27:25] total 790068
[2026-01-10 23:27:25] -rw-r--r--. 1 boinc boinc    579449 Jan  8 12:09 pilot3.tar.gz
[2026-01-10 23:27:25] -rwx------. 1 boinc boinc     36322 Jan  8 12:10 runpilot2-wrapper.sh
[2026-01-10 23:27:25] -rw-r--r--. 1 boinc boinc      5112 Jan  8 12:14 queuedata.json
[2026-01-10 23:27:25] -rw-r--r--. 1 boinc boinc       100 Jan 10 09:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 23:27:25] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 09:08 run_atlas
[2026-01-10 23:27:25] -rw-r--r--. 1 boinc boinc       105 Jan 10 09:08 job.xml
[2026-01-10 23:27:25] -rw-r--r--. 2 boinc boinc 392017497 Jan 10 09:08 EVNT.47962006._000005.pool.root.1
[2026-01-10 23:27:25] -rw-r--r--. 1 boinc boinc      6390 Jan 10 09:08 init_data.xml
[2026-01-10 23:27:25] -rw-r--r--. 2 boinc boinc     15847 Jan 10 09:08 start_atlas.sh
[2026-01-10 23:27:25] drwxrwx--x. 2 boinc boinc        68 Jan 10 09:08 shared
[2026-01-10 23:27:25] -rw-r--r--. 2 boinc boinc    592613 Jan 10 09:08 input.tar.gz
[2026-01-10 23:27:25] -rw-r--r--. 1 boinc boinc         0 Jan 10 09:08 boinc_lockfile
[2026-01-10 23:27:25] -rw-r--r--. 1 boinc boinc      2889 Jan 10 09:09 pandaJob.out
[2026-01-10 23:27:25] -rw-------. 1 boinc boinc    989374 Jan 10 09:13 agis_schedconf.cvmfs.json
[2026-01-10 23:27:25] drwx------. 5 boinc boinc      4096 Jan 10 09:13 pilot3
[2026-01-10 23:27:25] -rw-r--r--. 1 boinc boinc       533 Jan 10 22:55 boinc_task_state.xml
[2026-01-10 23:27:25] -rw-------. 1 boinc boinc 395577369 Jan 10 23:24 HITS.47962010._000105.pool.root.1
[2026-01-10 23:27:25] -rw-------. 1 boinc boinc      1030 Jan 10 23:24 memory_monitor_summary.json
[2026-01-10 23:27:25] -rw-------. 1 boinc boinc   1516240 Jan 10 23:25 agis_ddmendpoints.agis.ALL.json
[2026-01-10 23:27:25] -rw-------. 1 boinc boinc   1915195 Jan 10 23:25 log.47962010._000105.job.log.tgz.1
[2026-01-10 23:27:25] -rw-------. 1 boinc boinc        95 Jan 10 23:26 pilot_heartbeat.json
[2026-01-10 23:27:25] -rw-------. 1 boinc boinc      7932 Jan 10 23:26 heartbeat.json
[2026-01-10 23:27:25] -rw-------. 1 boinc boinc       820 Jan 10 23:27 pilotlog.txt
[2026-01-10 23:27:25] -rw-r--r--. 1 boinc boinc        29 Jan 10 23:27 wrapper_checkpoint.txt
[2026-01-10 23:27:25] -rw-r--r--. 1 boinc boinc      8192 Jan 10 23:27 boinc_mmap_file
[2026-01-10 23:27:25] -rw-------. 1 boinc boinc   6853930 Jan 10 23:27 log.47962010._000105.job.log.1
[2026-01-10 23:27:25] -rw-------. 1 boinc boinc       353 Jan 10 23:27 output.list
[2026-01-10 23:27:25] -rw-r--r--. 1 boinc boinc       620 Jan 10 23:27 runtime_log
[2026-01-10 23:27:25] -rw-------. 1 boinc boinc   8785920 Jan 10 23:27 result.tar.gz
[2026-01-10 23:27:25] -rw-------. 1 boinc boinc       661 Jan 10 23:27 S4NODmv52x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXSkKDmA2lunm.diag
[2026-01-10 23:27:25] -rw-r--r--. 1 boinc boinc      8817 Jan 10 23:27 runtime_log.err
[2026-01-10 23:27:25] -rw-r--r--. 1 boinc boinc     21394 Jan 10 23:27 stderr.txt
[2026-01-10 23:27:25] HITS file was successfully produced:
[2026-01-10 23:27:25] -rw-------. 1 boinc boinc 395577369 Jan 10 23:24 shared/HITS.pool.root.1
[2026-01-10 23:27:25]  *** Contents of shared directory: ***
[2026-01-10 23:27:25] total 778316
[2026-01-10 23:27:25] -rw-r--r--. 2 boinc boinc 392017497 Jan 10 09:08 ATLAS.root_0
[2026-01-10 23:27:25] -rw-r--r--. 2 boinc boinc     15847 Jan 10 09:08 start_atlas.sh
[2026-01-10 23:27:25] -rw-r--r--. 2 boinc boinc    592613 Jan 10 09:08 input.tar.gz
[2026-01-10 23:27:25] -rw-------. 1 boinc boinc 395577369 Jan 10 23:24 HITS.pool.root.1
[2026-01-10 23:27:25] -rw-------. 1 boinc boinc   8785920 Jan 10 23:27 result.tar.gz
23:27:27 (23553): run_atlas exited; CPU time 183282.054260
23:27:27 (23553): called boinc_finish(0)

</stderr_txt>
]]>

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