Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:40:41 (3011055): wrapper (7.7.26015): starting
20:40:41 (3011055): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 20:40:41] Arguments: --nthreads 8
[2026-01-09 20:40:41] Threads: 8
[2026-01-09 20:40:41] Checking for CVMFS
[2026-01-09 20:40:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 20:40:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 20:40:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 20:40:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 20:40:43] 2.13.3.0 9438 94180 150528 154963 3 435 29703826 40960000 32068 16776704 0 1221339833 99.736 870074628 48075 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 20:40:43] CVMFS is ok
[2026-01-09 20:40:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 20:40:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 20:40:43] Further information can be found at the LHC@home message board.
[2026-01-09 20:40:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 20:40:43] Checking for apptainer binary...
[2026-01-09 20:40:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 20:40:43] Running /usr/bin/apptainer --version
[2026-01-09 20:40:43] apptainer version 1.4.5-2.el9
[2026-01-09 20:40:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 20:40:44] c8-7-3.aglt2.org
[2026-01-09 20:40:44] apptainer works
[2026-01-09 20:40:44] Set ATHENA_PROC_NUMBER=8
[2026-01-09 20:40:44] Set ATHENA_CORE_NUMBER=8
[2026-01-09 20:40:44] Starting ATLAS job with PandaID=6963156487
[2026-01-09 20:40:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 22:20:05]  *** The last 200 lines of the pilot log: ***
[2026-01-09 22:20:05] 2026-01-10 03:18:48,501 | WARNING  | process 3029037 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 22:20:05] 2026-01-10 03:18:48,501 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963156487/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 22:20:05] 2026-01-10 03:18:48,501 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963156487/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 22:20:05] 2026-01-10 03:18:48,502 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-09 22:20:05] 2026-01-10 03:18:48,502 | WARNING  | maxPSS not found in memory monitor output
[2026-01-09 22:20:05] 2026-01-10 03:18:48,502 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3140852 B
[2026-01-09 22:20:05] 2026-01-10 03:18:48,502 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16325 B
[2026-01-09 22:20:05] 2026-01-10 03:18:48,502 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 22:20:05] 2026-01-10 03:18:48,519 | INFO     | sufficient remaining disk space (171417010176 B)
[2026-01-09 22:20:05] 2026-01-10 03:18:48,519 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-09 22:20:05] 2026-01-10 03:18:48,520 | INFO     | size of work directory /tmp/boinchome/slots/3/PanDA_Pilot-6963156487: 3447175 B (within 4404019200 B limit)
[2026-01-09 22:20:05] 2026-01-10 03:18:48,520 | INFO     | pfn file=/tmp/boinchome/slots/3/PanDA_Pilot-6963156487/HITS.47898826._031657.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-09 22:20:05] 2026-01-10 03:18:48,520 | INFO     | total size of present files: 0 B (workdir size: 3447175 B)
[2026-01-09 22:20:05] 2026-01-10 03:18:48,520 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/3/PanDA_Pilot-6963156487/HITS.47898826._031657.pool.root.1 since it does not exist
[2026-01-09 22:20:05] 2026-01-10 03:18:48,850 | INFO     | number of running child processes to parent process 3029037: 1
[2026-01-09 22:20:05] 2026-01-10 03:18:48,850 | INFO     | maximum number of monitored processes: 6
[2026-01-09 22:20:05] 2026-01-10 03:18:49,851 | INFO     | time since job start (5820s) is within the limit (349056.0s)
[2026-01-09 22:20:05] 2026-01-10 03:18:50,415 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 22:20:05] 2026-01-10 03:18:50,910 | INFO     | job 6963156487 has state=finished
[2026-01-09 22:20:05] 2026-01-10 03:18:50,910 | INFO     | preparing for final server update for job 6963156487 in state='finished'
[2026-01-09 22:20:05] 2026-01-10 03:18:50,911 | INFO     | this job has now completed (state=finished)
[2026-01-09 22:20:05] 2026-01-10 03:18:50,911 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 22:20:05] 2026-01-10 03:18:50,911 | INFO     | log transfer has been attempted: DONE
[2026-01-09 22:20:05] 2026-01-10 03:18:50,911 | INFO     | job 6963156487 has finished - writing final server update
[2026-01-09 22:20:05] 2026-01-10 03:18:50,911 | INFO     | total number of processed events: 400 (read)
[2026-01-09 22:20:05] 2026-01-10 03:18:50,912 | INFO     | executing command: lscpu
[2026-01-09 22:20:05] 2026-01-10 03:18:50,962 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 22:20:05] 2026-01-10 03:18:51,354 | INFO     | monitor loop #395: job 0:6963156487 is in state 'finished'
[2026-01-09 22:20:05] 2026-01-10 03:18:51,354 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 22:20:05] 2026-01-10 03:18:51,857 | INFO     | time since job start (5822s) is within the limit (349056.0s)
[2026-01-09 22:20:05] 2026-01-10 03:18:53,858 | INFO     | monitor loop #396: job 0:6963156487 is in state 'finished'
[2026-01-09 22:20:05] 2026-01-10 03:18:53,860 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 22:20:05] 2026-01-10 03:18:53,862 | INFO     | time since job start (5824s) is within the limit (349056.0s)
[2026-01-09 22:20:05] 2026-01-10 03:18:55,867 | INFO     | time since job start (5826s) is within the limit (349056.0s)
[2026-01-09 22:20:05] 2026-01-10 03:18:56,363 | INFO     | monitor loop #397: job 0:6963156487 is in state 'finished'
[2026-01-09 22:20:05] 2026-01-10 03:18:56,363 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 22:20:05] 2026-01-10 03:18:56,389 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 22:20:05] 2026-01-10 03:18:56,394 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.7688359375
[2026-01-09 22:20:05] 2026-01-10 03:18:56,407 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963156487/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 22:20:05] 2026-01-10 03:18:56,408 | INFO     | extracted standard info from prmon json
[2026-01-09 22:20:05] 2026-01-10 03:18:56,408 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 22:20:05] 2026-01-10 03:18:56,408 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 22:20:05] 2026-01-10 03:18:56,408 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 22:20:05] 2026-01-10 03:18:56,408 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 22:20:05] 2026-01-10 03:18:56,410 | INFO     | fitting pss+swap vs Time
[2026-01-09 22:20:05] 2026-01-10 03:18:56,410 | INFO     | sum of square deviations: 204160778.9885056
[2026-01-09 22:20:05] 2026-01-10 03:18:56,410 | INFO     | sum of deviations: -14716413267.82758
[2026-01-09 22:20:05] 2026-01-10 03:18:56,410 | INFO     | mean x: 1768012371.0114942
[2026-01-09 22:20:05] 2026-01-10 03:18:56,410 | INFO     | mean y: 2646736.827586207
[2026-01-09 22:20:05] 2026-01-10 03:18:56,410 | INFO     | intersect: 127445345786.78433
[2026-01-09 22:20:05] 2026-01-10 03:18:56,410 | INFO     | chi2: 0.18625149997747004
[2026-01-09 22:20:05] 2026-01-10 03:18:56,410 | INFO     | current memory leak: -72.08 B/s (using 87 data points, chi2=0.19)
[2026-01-09 22:20:05] 2026-01-10 03:18:56,411 | INFO     | could have reported an average CPU frequency of 3798 MHz (7 samples)
[2026-01-09 22:20:05] 2026-01-10 03:18:56,411 | INFO     | ..............................
[2026-01-09 22:20:05] 2026-01-10 03:18:56,411 | INFO     | . Timing measurements:
[2026-01-09 22:20:05] 2026-01-10 03:18:56,411 | INFO     | . get job = 0 s
[2026-01-09 22:20:05] 2026-01-10 03:18:56,411 | INFO     | . initial setup = 7 s
[2026-01-09 22:20:05] 2026-01-10 03:18:56,411 | INFO     | . payload setup = 42 s
[2026-01-09 22:20:05] 2026-01-10 03:18:56,411 | INFO     | . stage-in = 0 s
[2026-01-09 22:20:05] 2026-01-10 03:18:56,411 | INFO     | . payload execution = 5708 s
[2026-01-09 22:20:05] 2026-01-10 03:18:56,411 | INFO     | . stage-out = 0 s
[2026-01-09 22:20:05] 2026-01-10 03:18:56,411 | INFO     | . log creation = 0 s
[2026-01-09 22:20:05] 2026-01-10 03:18:56,411 | INFO     | ..............................
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | 
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | job summary report
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | --------------------------------------------------
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | PanDA job id: 6963156487
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | task id: 47898826
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | errors: (none)
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | pilot state: finished 
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | transexitcode: 0
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | exeerrorcode: 0
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | exeerrordiag: 
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | exitcode: 0
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | exitmsg: OK
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | cpuconsumptiontime: 30806 s
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | nevents: 400
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | neventsw: 0
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | pid: 3029037
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | pgrp: 3029037
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | corecount: 8
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | event service: False
[2026-01-09 22:20:05] 2026-01-10 03:18:56,467 | INFO     | sizes: {0: 2283854, 1: 2283996, 12: 2283996, 23: 2284024, 31: 2284314, 33: 2284342, 5754: 2311217, 5755: 2320215, 5758: 2320299, 5764: 2320493}
[2026-01-09 22:20:05] 2026-01-10 03:18:56,468 | INFO     | --------------------------------------------------
[2026-01-09 22:20:05] 2026-01-10 03:18:56,468 | INFO     | 
[2026-01-09 22:20:05] 2026-01-10 03:18:56,468 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-09 22:20:05] 2026-01-10 03:18:56,484 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,484 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,484 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,484 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,484 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,484 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,484 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,485 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,485 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,485 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,485 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,485 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 22:20:05] 2026-01-10 03:18:56,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,485 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 22:20:05] 2026-01-10 03:18:56,485 | INFO     | job 6963156487 has completed (purged errors)
[2026-01-09 22:20:05] 2026-01-10 03:18:56,485 | INFO     | overall cleanup function is called
[2026-01-09 22:20:05] 2026-01-10 03:18:57,492 | INFO     | --- collectZombieJob: --- 10, [3029037]
[2026-01-09 22:20:05] 2026-01-10 03:18:57,492 | INFO     | zombie collector waiting for pid 3029037
[2026-01-09 22:20:05] 2026-01-10 03:18:57,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 22:20:05] 2026-01-10 03:18:57,492 | INFO     | collected zombie processes
[2026-01-09 22:20:05] 2026-01-10 03:18:57,492 | INFO     | will attempt to kill all subprocesses of pid=3029037
[2026-01-09 22:20:05] 2026-01-10 03:18:57,903 | INFO     | process IDs to be killed: [3029037] (in reverse order)
[2026-01-09 22:20:05] 2026-01-10 03:18:58,074 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 22:20:05] 2026-01-10 03:18:58,075 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 22:20:05] 2026-01-10 03:18:58,127 | INFO     | did not find any defunct processes belonging to 3029037
[2026-01-09 22:20:05] 2026-01-10 03:18:58,150 | INFO     | did not find any defunct processes belonging to 3029037
[2026-01-09 22:20:05] 2026-01-10 03:18:58,151 | INFO     | ready for new job
[2026-01-09 22:20:05] 2026-01-10 03:18:58,151 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 22:20:05] 2026-01-10 03:18:58,152 | INFO     | ***************************************
[2026-01-09 22:20:05] 2026-01-10 03:18:58,152 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 22:20:05] 2026-01-10 03:18:58,152 | INFO     | ***************************************
[2026-01-09 22:20:05] 2026-01-10 03:18:58,152 | INFO     | 
[2026-01-09 22:20:05] 2026-01-10 03:18:58,157 | INFO     | architecture information:
[2026-01-09 22:20:05] 2026-01-10 03:18:58,157 | INFO     | executing command: cat /etc/os-release
[2026-01-09 22:20:05] 2026-01-10 03:18:58,171 | INFO     | cat /etc/os-release:
[2026-01-09 22:20:05] NAME="CentOS Linux"
[2026-01-09 22:20:05] VERSION="7 (Core)"
[2026-01-09 22:20:05] ID="centos"
[2026-01-09 22:20:05] ID_LIKE="rhel fedora"
[2026-01-09 22:20:05] VERSION_ID="7"
[2026-01-09 22:20:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 22:20:05] ANSI_COLOR="0;31"
[2026-01-09 22:20:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 22:20:05] HOME_URL="https://www.centos.org/"
[2026-01-09 22:20:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 22:20:05] 
[2026-01-09 22:20:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 22:20:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 22:20:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 22:20:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 22:20:05] 
[2026-01-09 22:20:05] 2026-01-10 03:18:58,171 | INFO     | ***************************************
[2026-01-09 22:20:05] 2026-01-10 03:18:58,674 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 22:20:05] 2026-01-10 03:18:58,689 | INFO     | sufficient remaining disk space (171421204480 B)
[2026-01-09 22:20:05] 2026-01-10 03:18:58,689 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 22:20:05] 2026-01-10 03:18:58,689 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 22:20:05] 2026-01-10 03:18:58,689 | INFO     | update_server=False
[2026-01-09 22:20:05] 2026-01-10 03:18:58,689 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 22:20:05] 2026-01-10 03:18:58,739 | INFO     | all payload control threads have been joined
[2026-01-09 22:20:05] 2026-01-10 03:18:58,867 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 22:20:05] 2026-01-10 03:18:58,867 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 22:20:05] 2026-01-10 03:18:58,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:20:05] 2026-01-10 03:18:58,867 | INFO     | will abort loop
[2026-01-09 22:20:05] 2026-01-10 03:18:58,874 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 22:20:05] 2026-01-10 03:18:58,995 | INFO     | all job control threads have been joined
[2026-01-09 22:20:05] 2026-01-10 03:18:59,587 | INFO     | all data control threads have been joined
[2026-01-09 22:20:05] 2026-01-10 03:18:59,695 | INFO     | [job] retrieve thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:18:59,745 | INFO     | [payload] control thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:18:59,824 | INFO     | [data] copytool_in thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:18:59,873 | INFO     | [job] job monitor thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:19:00,001 | INFO     | [job] control thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:19:00,028 | INFO     | [job] validate thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:19:00,367 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:19:00,379 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:19:00,386 | INFO     | [payload] failed_post thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:19:00,593 | INFO     | [data] control thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:19:00,880 | INFO     | [data] copytool_out thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:19:00,898 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:19:00,996 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:19:01,037 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 22:20:05] 2026-01-10 03:19:01,272 | INFO     | [payload] validate_post thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:19:01,478 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:20:05] 2026-01-10 03:19:02,484 | INFO     | [job] queue monitor thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:19:05,045 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 22:20:05] 2026-01-10 03:19:29,455 | INFO     | PID=3016728 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 22:20:05] 2026-01-10 03:19:29,457 | INFO     | .. there are 21 such processes running
[2026-01-09 22:20:05] 2026-01-10 03:19:29,457 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 22:20:05] 2026-01-10 03:19:29,457 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 22:20:05] 2026-01-10 03:19:29,457 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 22:20:05] 2026-01-10 03:19:58,710 | INFO     | [monitor] cgroup control has ended
[2026-01-09 22:20:05] 2026-01-10 03:20:00,180 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140551683745600)>', '<ExcThread(monitor, started 140551194146560)>']
[2026-01-09 22:20:05] 2026-01-10 03:20:00,636 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 22:20:05] 2026-01-10 03:20:00,636 | INFO     | [monitor] control thread has ended
[2026-01-09 22:20:05] 2026-01-10 03:20:05,212 | INFO     | all workflow threads have been joined
[2026-01-09 22:20:05] 2026-01-10 03:20:05,215 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 22:20:05] 2026-01-10 03:20:05,215 | INFO     | traces error code: 0
[2026-01-09 22:20:05] 2026-01-10 03:20:05,215 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 22:20:05] 2026-01-10 03:20:05,349 [wrapper] ==== pilot stdout END ====
[2026-01-09 22:20:05] 2026-01-10 03:20:05,356 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 22:20:05] 2026-01-10 03:20:05,379 [wrapper] pilotpid: 3016728
[2026-01-09 22:20:05] 2026-01-10 03:20:05,447 [wrapper] Pilot exit status: 0
[2026-01-09 22:20:05] 2026-01-10 03:20:05,484 [wrapper] pandaids: 6963156487
[2026-01-09 22:20:05] 2026-01-10 03:20:05,609 [wrapper] cleanup supervisor_pilot 3545928 3016729
[2026-01-09 22:20:05] 2026-01-10 03:20:05,611 [wrapper] Test setup, not cleaning
[2026-01-09 22:20:05] 2026-01-10 03:20:05,615 [wrapper] apfmon messages muted
[2026-01-09 22:20:05] 2026-01-10 03:20:05,618 [wrapper] ==== wrapper stdout END ====
[2026-01-09 22:20:05] 2026-01-10 03:20:05,620 [wrapper] ==== wrapper stderr END ====
[2026-01-09 22:20:05]  *** Error codes and diagnostics ***
[2026-01-09 22:20:05]     "exeErrorCode": 0,
[2026-01-09 22:20:05]     "exeErrorDiag": "",
[2026-01-09 22:20:05]     "pilotErrorCode": 0,
[2026-01-09 22:20:05]     "pilotErrorDiag": "",
[2026-01-09 22:20:05]  *** Listing of results directory ***
[2026-01-09 22:20:05] total 443076
[2026-01-09 22:20:05] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 14:06 pilot3.tar.gz
[2026-01-09 22:20:05] -rwx------. 1 boincer umatlas     36322 Jan  8 14:10 runpilot2-wrapper.sh
[2026-01-09 22:20:05] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 14:11 queuedata.json
[2026-01-09 22:20:05] -rw-r--r--. 1 boincer umatlas       100 Jan  9 20:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 22:20:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 20:40 run_atlas
[2026-01-09 22:20:05] -rw-r--r--. 1 boincer umatlas       105 Jan  9 20:40 job.xml
[2026-01-09 22:20:05] -rw-r--r--. 2 boincer umatlas 227583420 Jan  9 20:40 EVNT.47898824._000906.pool.root.1
[2026-01-09 22:20:05] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 20:40 start_atlas.sh
[2026-01-09 22:20:05] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 20:40 shared
[2026-01-09 22:20:05] -rw-r--r--. 2 boincer umatlas    592394 Jan  9 20:40 input.tar.gz
[2026-01-09 22:20:05] -rw-r--r--. 1 boincer umatlas         0 Jan  9 20:40 boinc_lockfile
[2026-01-09 22:20:05] -rw-r--r--. 1 boincer umatlas      2518 Jan  9 20:40 pandaJob.out
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas        57 Jan  9 20:40 setup.sh.local
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas    989382 Jan  9 20:41 agis_schedconf.cvmfs.json
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas   1516240 Jan  9 20:41 agis_ddmendpoints.agis.ALL.json
[2026-01-09 22:20:05] drwx------. 5 boincer umatlas      4096 Jan  9 20:41 pilot3
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas 219932337 Jan  9 22:18 HITS.47898826._031657.pool.root.1
[2026-01-09 22:20:05] -rw-r--r--. 1 boincer umatlas       529 Jan  9 22:18 boinc_task_state.xml
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas        95 Jan  9 22:18 pilot_heartbeat.json
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas      1033 Jan  9 22:18 memory_monitor_summary.json
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas    337613 Jan  9 22:18 log.47898826._031657.job.log.tgz.1
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas      7778 Jan  9 22:18 heartbeat.json
[2026-01-09 22:20:05] -rw-r--r--. 1 boincer umatlas      7171 Jan  9 22:19 init_data.xml
[2026-01-09 22:20:05] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 22:20 boinc_mmap_file
[2026-01-09 22:20:05] -rw-r--r--. 1 boincer umatlas        27 Jan  9 22:20 wrapper_checkpoint.txt
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas      5011 Jan  9 22:20 pilotlog.txt
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas    800631 Jan  9 22:20 log.47898826._031657.job.log.1
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas       357 Jan  9 22:20 output.list
[2026-01-09 22:20:05] -rw-r--r--. 1 boincer umatlas       620 Jan  9 22:20 runtime_log
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas   1157120 Jan  9 22:20 result.tar.gz
[2026-01-09 22:20:05] -rw-r--r--. 1 boincer umatlas      9332 Jan  9 22:20 runtime_log.err
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas       651 Jan  9 22:20 CUFKDmwZAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXNlKDmje3kon.diag
[2026-01-09 22:20:05] -rw-r--r--. 1 boincer umatlas     22569 Jan  9 22:20 stderr.txt
[2026-01-09 22:20:05] HITS file was successfully produced:
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas 219932337 Jan  9 22:18 shared/HITS.pool.root.1
[2026-01-09 22:20:05]  *** Contents of shared directory: ***
[2026-01-09 22:20:05] total 438764
[2026-01-09 22:20:05] -rw-r--r--. 2 boincer umatlas 227583420 Jan  9 20:40 ATLAS.root_0
[2026-01-09 22:20:05] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 20:40 start_atlas.sh
[2026-01-09 22:20:05] -rw-r--r--. 2 boincer umatlas    592394 Jan  9 20:40 input.tar.gz
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas 219932337 Jan  9 22:18 HITS.pool.root.1
[2026-01-09 22:20:05] -rw-------. 1 boincer umatlas   1157120 Jan  9 22:20 result.tar.gz
22:20:07 (3011055): run_atlas exited; CPU time 30970.426792
22:20:07 (3011055): called boinc_finish(0)

</stderr_txt>
]]>

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