Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
04:46:02 (24678): wrapper (7.7.26015): starting
04:46:02 (24678): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 04:46:02] Arguments: --nthreads 8
[2026-01-10 04:46:02] Threads: 8
[2026-01-10 04:46:02] Checking for CVMFS
[2026-01-10 04:46:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 04:46:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 04:46:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 04:46:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 04:46:03] 2.11.0.0 4598 129608 103280 154966 2 57 3630251 4096000 0 130560 2 11158236 99.554 9359266 541 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-10 04:46:03] CVMFS is ok
[2026-01-10 04:46:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 04:46:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 04:46:03] Further information can be found at the LHC@home message board.
[2026-01-10 04:46:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 04:46:03] Checking for apptainer binary...
[2026-01-10 04:46:03] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-10 04:46:03] apptainer is not installed, using version from CVMFS
[2026-01-10 04:46:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 04:46:03] WARNING: Environment variable TMPDIR already has value [/tmp/job_11011047/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node085
[2026-01-10 04:46:03] apptainer works
[2026-01-10 04:46:03] Set ATHENA_PROC_NUMBER=8
[2026-01-10 04:46:03] Set ATHENA_CORE_NUMBER=8
[2026-01-10 04:46:03] Starting ATLAS job with PandaID=6964539397
[2026-01-10 04:46:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11011047/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 05:09:16]  *** The last 200 lines of the pilot log: ***
[2026-01-10 05:09:16]  protocol_id=None
[2026-01-10 05:09:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 05:09:16]  replicas=None
[2026-01-10 05:09:16]  scope=mc16_13TeV
[2026-01-10 05:09:16]  status=None
[2026-01-10 05:09:16]  status_code=0
[2026-01-10 05:09:16]  storage_token=
[2026-01-10 05:09:16]  surl=/tmp/job_11011047/atlas/pilot/slots/0/PanDA_Pilot-6964539397/log.47962010._001961.job.log.tgz.1
[2026-01-10 05:09:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/79/c8/log.47962010._001961.job.log.tgz.1
[2026-01-10 05:09:16]  workdir=None
[2026-01-10 05:09:16] ]
[2026-01-10 05:09:16] 2026-01-10 04:08:10,432 | INFO     | transferring file log.47962010._001961.job.log.tgz.1 from /tmp/job_11011047/atlas/pilot/slots/0/PanDA_Pilot-6964539397/log.47962010._001961.job.log.tgz.1 to /tmp/j
[2026-01-10 05:09:16] 2026-01-10 04:08:10,432 | INFO     | executing command: /usr/bin/env mv /tmp/job_11011047/atlas/pilot/slots/0/PanDA_Pilot-6964539397/log.47962010._001961.job.log.tgz.1 /tmp/job_11011047/atlas/pilot/sl
[2026-01-10 05:09:16] 2026-01-10 04:08:10,441 | INFO     | adding to output.list: log.47962010._001961.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/79/c8/log.47962010._001961.job.log.tgz.
[2026-01-10 05:09:16] 2026-01-10 04:08:10,441 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 05:09:16] 2026-01-10 04:08:10,441 | INFO     | summary of transferred files:
[2026-01-10 05:09:16] 2026-01-10 04:08:10,441 | INFO     |  -- lfn=log.47962010._001961.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 05:09:16] 2026-01-10 04:08:10,441 | INFO     | stage-out finished correctly
[2026-01-10 05:09:16] 2026-01-10 04:08:10,820 | WARNING  | process 2962 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 05:09:16] 2026-01-10 04:08:10,820 | INFO     | using path: /tmp/job_11011047/atlas/pilot/slots/0/PanDA_Pilot-6964539397/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 05:09:16] 2026-01-10 04:08:10,909 | INFO     | number of running child processes to parent process 2962: 1
[2026-01-10 05:09:16] 2026-01-10 04:08:10,909 | INFO     | maximum number of monitored processes: 16
[2026-01-10 05:09:16] 2026-01-10 04:08:11,459 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 05:09:16] 2026-01-10 04:08:11,508 | INFO     | time since job start (1322s) is within the limit (349056.0s)
[2026-01-10 05:09:16] 2026-01-10 04:08:13,412 | INFO     | monitor loop #103: job 0:6964539397 is in state 'finished'
[2026-01-10 05:09:16] 2026-01-10 04:08:13,412 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 05:09:16] 2026-01-10 04:08:13,511 | INFO     | time since job start (1324s) is within the limit (349056.0s)
[2026-01-10 05:09:16] 2026-01-10 04:08:14,269 | INFO     | job 6964539397 has state=finished
[2026-01-10 05:09:16] 2026-01-10 04:08:14,269 | INFO     | preparing for final server update for job 6964539397 in state='finished'
[2026-01-10 05:09:16] 2026-01-10 04:08:14,270 | INFO     | this job has now completed (state=finished)
[2026-01-10 05:09:16] 2026-01-10 04:08:14,270 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 05:09:16] 2026-01-10 04:08:14,270 | INFO     | log transfer has been attempted: DONE
[2026-01-10 05:09:16] 2026-01-10 04:08:14,270 | INFO     | job 6964539397 has finished - writing final server update
[2026-01-10 05:09:16] 2026-01-10 04:08:14,270 | INFO     | total number of processed events: 50 (read)
[2026-01-10 05:09:16] 2026-01-10 04:08:14,271 | INFO     | executing command: lscpu
[2026-01-10 05:09:16] 2026-01-10 04:08:14,303 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 05:09:16] 2026-01-10 04:08:15,516 | INFO     | time since job start (1326s) is within the limit (349056.0s)
[2026-01-10 05:09:16] 2026-01-10 04:08:15,914 | INFO     | monitor loop #104: job 0:6964539397 is in state 'finished'
[2026-01-10 05:09:16] 2026-01-10 04:08:15,915 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 05:09:16] 2026-01-10 04:08:16,074 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 05:09:16] 2026-01-10 04:08:16,078 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2489.5378281249996
[2026-01-10 05:09:16] 2026-01-10 04:08:16,083 | INFO     | using path: /tmp/job_11011047/atlas/pilot/slots/0/PanDA_Pilot-6964539397/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 05:09:16] 2026-01-10 04:08:16,084 | INFO     | extracted standard info from prmon json
[2026-01-10 05:09:16] 2026-01-10 04:08:16,084 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 05:09:16] 2026-01-10 04:08:16,084 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 05:09:16] 2026-01-10 04:08:16,084 | INFO     | fitting pss+swap vs Time
[2026-01-10 05:09:16] 2026-01-10 04:08:16,084 | INFO     | sum of square deviations: 1041880.0
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | sum of deviations: -658953842.0
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | mean x: 1768017518.0
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | mean y: 2580945.6666666665
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | intersect: 1118213830042.8796
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | chi2: 0.1414495566614561
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | current memory leak: -632.47 B/s (using 15 data points, chi2=0.14)
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | could have reported an average CPU frequency of 2399 MHz (4 samples)
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | ..............................
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | . Timing measurements:
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | . get job = 0 s
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | . initial setup = 1 s
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | . payload setup = 2 s
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | . stage-in = 0 s
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | . payload execution = 1301 s
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | . stage-out = 0 s
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | . log creation = 0 s
[2026-01-10 05:09:16] 2026-01-10 04:08:16,085 | INFO     | ..............................
[2026-01-10 05:09:16] 2026-01-10 04:08:16,134 | INFO     | 
[2026-01-10 05:09:16] 2026-01-10 04:08:16,134 | INFO     | job summary report
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | --------------------------------------------------
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | PanDA job id: 6964539397
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | task id: 47962010
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | errors: (none)
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | pilot state: finished 
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | transexitcode: 0
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | exeerrorcode: 0
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | exeerrordiag: 
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | exitcode: 0
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | exitmsg: OK
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | cpuconsumptiontime: 7832 s
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | nevents: 50
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | neventsw: 0
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | pid: 2962
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | pgrp: 2962
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | corecount: 8
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | event service: False
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | sizes: {0: 2284695, 2: 2284957, 11: 2284985, 1307: 2310471, 1309: 2319495, 1310: 2319551, 1315: 2319925}
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | --------------------------------------------------
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | 
[2026-01-10 05:09:16] 2026-01-10 04:08:16,135 | INFO     | executing command: ls -lF /tmp/job_11011047/atlas/pilot/slots/0
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,145 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,146 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 05:09:16] 2026-01-10 04:08:16,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,146 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 05:09:16] 2026-01-10 04:08:16,146 | INFO     | job 6964539397 has completed (purged errors)
[2026-01-10 05:09:16] 2026-01-10 04:08:16,146 | INFO     | overall cleanup function is called
[2026-01-10 05:09:16] 2026-01-10 04:08:17,153 | INFO     | --- collectZombieJob: --- 10, [2962]
[2026-01-10 05:09:16] 2026-01-10 04:08:17,153 | INFO     | zombie collector waiting for pid 2962
[2026-01-10 05:09:16] 2026-01-10 04:08:17,153 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 05:09:16] 2026-01-10 04:08:17,153 | INFO     | collected zombie processes
[2026-01-10 05:09:16] 2026-01-10 04:08:17,153 | INFO     | will attempt to kill all subprocesses of pid=2962
[2026-01-10 05:09:16] 2026-01-10 04:08:17,249 | INFO     | process IDs to be killed: [2962] (in reverse order)
[2026-01-10 05:09:16] 2026-01-10 04:08:17,284 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 05:09:16] 2026-01-10 04:08:17,284 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 05:09:16] 2026-01-10 04:08:17,288 | INFO     | did not find any defunct processes belonging to 2962
[2026-01-10 05:09:16] 2026-01-10 04:08:17,291 | INFO     | did not find any defunct processes belonging to 2962
[2026-01-10 05:09:16] 2026-01-10 04:08:17,291 | INFO     | ready for new job
[2026-01-10 05:09:16] 2026-01-10 04:08:17,291 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 05:09:16] 2026-01-10 04:08:17,292 | INFO     | ***************************************
[2026-01-10 05:09:16] 2026-01-10 04:08:17,292 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 05:09:16] 2026-01-10 04:08:17,292 | INFO     | ***************************************
[2026-01-10 05:09:16] 2026-01-10 04:08:17,292 | INFO     | 
[2026-01-10 05:09:16] 2026-01-10 04:08:17,306 | INFO     | architecture information:
[2026-01-10 05:09:16] 2026-01-10 04:08:17,306 | INFO     | executing command: cat /etc/os-release
[2026-01-10 05:09:16] 2026-01-10 04:08:17,313 | INFO     | cat /etc/os-release:
[2026-01-10 05:09:16] NAME="CentOS Linux"
[2026-01-10 05:09:16] VERSION="7 (Core)"
[2026-01-10 05:09:16] ID="centos"
[2026-01-10 05:09:16] ID_LIKE="rhel fedora"
[2026-01-10 05:09:16] VERSION_ID="7"
[2026-01-10 05:09:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 05:09:16] ANSI_COLOR="0;31"
[2026-01-10 05:09:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 05:09:16] HOME_URL="https://www.centos.org/"
[2026-01-10 05:09:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 05:09:16] 
[2026-01-10 05:09:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 05:09:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 05:09:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 05:09:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 05:09:16] 
[2026-01-10 05:09:16] 2026-01-10 04:08:17,313 | INFO     | ***************************************
[2026-01-10 05:09:16] 2026-01-10 04:08:17,816 | INFO     | executing command: df -mP /tmp/job_11011047/atlas/pilot/slots/0
[2026-01-10 05:09:16] 2026-01-10 04:08:17,822 | INFO     | sufficient remaining disk space (226050965504 B)
[2026-01-10 05:09:16] 2026-01-10 04:08:17,822 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 05:09:16] 2026-01-10 04:08:17,822 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 05:09:16] 2026-01-10 04:08:17,822 | INFO     | update_server=False
[2026-01-10 05:09:16] 2026-01-10 04:08:17,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 05:09:16] 2026-01-10 04:08:17,822 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:09:16] 2026-01-10 04:08:17,822 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 05:09:16] 2026-01-10 04:08:17,822 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:09:16] 2026-01-10 04:08:17,823 | INFO     | aborting loop
[2026-01-10 05:09:16] 2026-01-10 04:08:18,368 | INFO     | all job control threads have been joined
[2026-01-10 05:09:16] 2026-01-10 04:08:18,502 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 05:09:16] 2026-01-10 04:08:18,610 | INFO     | all data control threads have been joined
[2026-01-10 05:09:16] 2026-01-10 04:08:18,827 | INFO     | [job] retrieve thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:18,828 | INFO     | [job] queue monitor thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:18,828 | INFO     | [job] job monitor thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:18,831 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:19,183 | INFO     | all payload control threads have been joined
[2026-01-10 05:09:16] 2026-01-10 04:08:19,373 | INFO     | [job] control thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:19,510 | INFO     | [payload] validate_post thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:19,572 | INFO     | [job] validate thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:19,615 | INFO     | [data] control thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:19,721 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:19,896 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:19,983 | INFO     | [payload] failed_post thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:20,129 | INFO     | [data] copytool_in thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:20,188 | INFO     | [payload] control thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:20,507 | INFO     | [data] copytool_out thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:21,828 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:28,641 | INFO     | job.realtimelogging is not enabled
[2026-01-10 05:09:16] 2026-01-10 04:08:29,646 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 05:09:16] 2026-01-10 04:08:48,703 | INFO     | PID=28531 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 05:09:16] 2026-01-10 04:08:48,703 | INFO     | .. there are 2 such processes running
[2026-01-10 05:09:16] 2026-01-10 04:08:48,704 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 05:09:16] 2026-01-10 04:08:48,704 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 05:09:16] 2026-01-10 04:08:48,704 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 05:09:16] 2026-01-10 04:09:10,649 | INFO     | [monitor] cgroup control has ended
[2026-01-10 05:09:16] 2026-01-10 04:09:11,654 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2026-01-10 05:09:16] 2026-01-10 04:09:11,820 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 05:09:16] 2026-01-10 04:09:11,820 | INFO     | [monitor] control thread has ended
[2026-01-10 05:09:16] 2026-01-10 04:09:16,679 | INFO     | all workflow threads have been joined
[2026-01-10 05:09:16] 2026-01-10 04:09:16,679 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 05:09:16] 2026-01-10 04:09:16,680 | INFO     | traces error code: 0
[2026-01-10 05:09:16] 2026-01-10 04:09:16,680 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 05:09:16] 2026-01-10 04:09:16,733 [wrapper] ==== pilot stdout END ====
[2026-01-10 05:09:16] 2026-01-10 04:09:16,734 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 05:09:16] 2026-01-10 04:09:16,736 [wrapper] pilotpid: 28531
[2026-01-10 05:09:16] 2026-01-10 04:09:16,737 [wrapper] Pilot exit status: 0
[2026-01-10 05:09:16] 2026-01-10 04:09:16,741 [wrapper] pandaids: 6964539397
[2026-01-10 05:09:16] 2026-01-10 04:09:16,764 [wrapper] cleanup supervisor_pilot 30220 28532
[2026-01-10 05:09:16] 2026-01-10 04:09:16,765 [wrapper] Test setup, not cleaning
[2026-01-10 05:09:16] 2026-01-10 04:09:16,766 [wrapper] apfmon messages muted
[2026-01-10 05:09:16] 2026-01-10 04:09:16,767 [wrapper] ==== wrapper stdout END ====
[2026-01-10 05:09:16] 2026-01-10 04:09:16,769 [wrapper] ==== wrapper stderr END ====
[2026-01-10 05:09:16]  *** Error codes and diagnostics ***
[2026-01-10 05:09:16]     "exeErrorCode": 0,
[2026-01-10 05:09:16]     "exeErrorDiag": "",
[2026-01-10 05:09:16]     "pilotErrorCode": 0,
[2026-01-10 05:09:16]     "pilotErrorDiag": "",
[2026-01-10 05:09:16]  *** Listing of results directory ***
[2026-01-10 05:09:16] total 434348
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user    579449 Jan  9 16:55 pilot3.tar.gz
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user      5112 Jan  9 16:59 queuedata.json
[2026-01-10 05:09:16] -rwx------ 1 mf493845 unix-user     36322 Jan  9 17:00 runpilot2-wrapper.sh
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user       100 Jan 10 03:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 05:09:16] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 10 03:06 run_atlas
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user       105 Jan 10 03:06 job.xml
[2026-01-10 05:09:16] -rw-r--r-- 2 mf493845 unix-user 392712777 Jan 10 04:46 EVNT.47962006._000047.pool.root.1
[2026-01-10 05:09:16] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 04:46 start_atlas.sh
[2026-01-10 05:09:16] drwxrwx--x 2 mf493845 unix-user       100 Jan 10 04:46 shared
[2026-01-10 05:09:16] -rw-r--r-- 2 mf493845 unix-user    592612 Jan 10 04:46 input.tar.gz
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user      6390 Jan 10 04:46 init_data.xml
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user         0 Jan 10 04:46 boinc_setup_complete
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user      8192 Jan 10 04:46 boinc_mmap_file
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user         0 Jan 10 04:46 boinc_lockfile
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user      2890 Jan 10 04:46 pandaJob.out
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user    989374 Jan 10 04:46 agis_schedconf.cvmfs.json
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user   1516240 Jan 10 04:46 agis_ddmendpoints.agis.ALL.json
[2026-01-10 05:09:16] drwx------ 5 mf493845 unix-user       440 Jan 10 04:46 pilot3
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user  45418255 Jan 10 05:07 HITS.47962010._001961.pool.root.1
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user      1016 Jan 10 05:08 memory_monitor_summary.json
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user   1123580 Jan 10 05:08 log.47962010._001961.job.log.tgz.1
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user      8543 Jan 10 05:08 heartbeat.json
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user        95 Jan 10 05:08 pilot_heartbeat.json
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user      4907 Jan 10 05:09 pilotlog.txt
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user    252308 Jan 10 05:09 log.47962010._001961.job.log.1
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user       353 Jan 10 05:09 output.list
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user       620 Jan 10 05:09 runtime_log
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user   1392640 Jan 10 05:09 result.tar.gz
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user      9220 Jan 10 05:09 runtime_log.err
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user       643 Jan 10 05:09 JXRLDmI5Ty8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqThKDm4g0oGm.diag
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user     22355 Jan 10 05:09 stderr.txt
[2026-01-10 05:09:16] HITS file was successfully produced:
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user 45418255 Jan 10 05:07 shared/HITS.pool.root.1
[2026-01-10 05:09:16]  *** Contents of shared directory: ***
[2026-01-10 05:09:16] total 429824
[2026-01-10 05:09:16] -rw-r--r-- 2 mf493845 unix-user 392712777 Jan 10 04:46 ATLAS.root_0
[2026-01-10 05:09:16] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 04:46 start_atlas.sh
[2026-01-10 05:09:16] -rw-r--r-- 2 mf493845 unix-user    592612 Jan 10 04:46 input.tar.gz
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user  45418255 Jan 10 05:07 HITS.pool.root.1
[2026-01-10 05:09:16] -rw------- 1 mf493845 unix-user   1392640 Jan 10 05:09 result.tar.gz
05:09:18 (24678): run_atlas exited; CPU time 7835.396705
05:09:18 (24678): called boinc_finish(0)

</stderr_txt>
]]>

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