Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:58:46 (24105): wrapper (7.7.26015): starting
02:58:46 (24105): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 02:58:46] Arguments: --nthreads 8
[2026-01-10 02:58:46] Threads: 8
[2026-01-10 02:58:46] Checking for CVMFS
[2026-01-10 02:58:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 02:58:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 02:58:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 02:58:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 02:58:46] 2.11.0.0 4270 129661 83672 154963 2 57 2581944 4096001 0 130560 16 10962928 99.446 11474009 642 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-10 02:58:46] CVMFS is ok
[2026-01-10 02:58:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 02:58:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 02:58:46] Further information can be found at the LHC@home message board.
[2026-01-10 02:58:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 02:58:46] Checking for apptainer binary...
[2026-01-10 02:58:46] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-10 02:58:46] apptainer is not installed, using version from CVMFS
[2026-01-10 02:58:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 02:58:47] WARNING: Environment variable TMPDIR already has value [/tmp/job_11010976/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node288
[2026-01-10 02:58:47] apptainer works
[2026-01-10 02:58:47] Set ATHENA_PROC_NUMBER=8
[2026-01-10 02:58:47] Set ATHENA_CORE_NUMBER=8
[2026-01-10 02:58:47] Starting ATLAS job with PandaID=6963168911
[2026-01-10 02:58:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11010976/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 04:12:21]  *** The last 200 lines of the pilot log: ***
[2026-01-10 04:12:21]  workdir=None
[2026-01-10 04:12:21] ]
[2026-01-10 04:12:21] 2026-01-10 03:11:44,611 | INFO     | transferring file log.47898826._036438.job.log.tgz.1 from /tmp/job_11010976/atlas/pilot/slots/0/PanDA_Pilot-6963168911/log.47898826._036438.job.log.tgz.1 to /tmp/j
[2026-01-10 04:12:21] 2026-01-10 03:11:44,611 | INFO     | executing command: /usr/bin/env mv /tmp/job_11010976/atlas/pilot/slots/0/PanDA_Pilot-6963168911/log.47898826._036438.job.log.tgz.1 /tmp/job_11010976/atlas/pilot/sl
[2026-01-10 04:12:21] 2026-01-10 03:11:44,618 | INFO     | adding to output.list: log.47898826._036438.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/be/22/log.47898826._036438.job.log.tg
[2026-01-10 04:12:21] 2026-01-10 03:11:44,618 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 04:12:21] 2026-01-10 03:11:44,618 | INFO     | summary of transferred files:
[2026-01-10 04:12:21] 2026-01-10 03:11:44,618 | INFO     |  -- lfn=log.47898826._036438.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 04:12:21] 2026-01-10 03:11:44,618 | INFO     | stage-out finished correctly
[2026-01-10 04:12:21] 2026-01-10 03:11:46,588 | INFO     | time since job start (4375s) is within the limit (349056.0s)
[2026-01-10 04:12:21] 2026-01-10 03:11:46,836 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 04:12:21] 2026-01-10 03:11:48,223 | WARNING  | process 2213 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 04:12:21] 2026-01-10 03:11:48,224 | INFO     | using path: /tmp/job_11010976/atlas/pilot/slots/0/PanDA_Pilot-6963168911/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 04:12:21] 2026-01-10 03:11:48,224 | INFO     | using path: /tmp/job_11010976/atlas/pilot/slots/0/PanDA_Pilot-6963168911/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 04:12:21] 2026-01-10 03:11:48,224 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-10 04:12:21] 2026-01-10 03:11:48,224 | WARNING  | maxPSS not found in memory monitor output
[2026-01-10 04:12:21] 2026-01-10 03:11:48,225 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3378809 B
[2026-01-10 04:12:21] 2026-01-10 03:11:48,225 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15873 B
[2026-01-10 04:12:21] 2026-01-10 03:11:48,225 | INFO     | executing command: df -mP /tmp/job_11010976/atlas/pilot/slots/0
[2026-01-10 04:12:21] 2026-01-10 03:11:48,232 | INFO     | sufficient remaining disk space (227436134400 B)
[2026-01-10 04:12:21] 2026-01-10 03:11:48,232 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-10 04:12:21] 2026-01-10 03:11:48,232 | INFO     | size of work directory /tmp/job_11010976/atlas/pilot/slots/0/PanDA_Pilot-6963168911: 3681368 B (within 4404019200 B limit)
[2026-01-10 04:12:21] 2026-01-10 03:11:48,232 | INFO     | pfn file=/tmp/job_11010976/atlas/pilot/slots/0/PanDA_Pilot-6963168911/HITS.47898826._036438.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-10 04:12:21] 2026-01-10 03:11:48,232 | INFO     | total size of present files: 0 B (workdir size: 3681368 B)
[2026-01-10 04:12:21] 2026-01-10 03:11:48,232 | INFO     | output file size check: skipping output file /tmp/job_11010976/atlas/pilot/slots/0/PanDA_Pilot-6963168911/HITS.47898826._036438.pool.root.1 since it does not exist
[2026-01-10 04:12:21] 2026-01-10 03:11:48,317 | INFO     | number of running child processes to parent process 2213: 1
[2026-01-10 04:12:21] 2026-01-10 03:11:48,317 | INFO     | maximum number of monitored processes: 6
[2026-01-10 04:12:21] 2026-01-10 03:11:48,594 | INFO     | time since job start (4377s) is within the limit (349056.0s)
[2026-01-10 04:12:21] 2026-01-10 03:11:48,647 | INFO     | job 6963168911 has state=finished
[2026-01-10 04:12:21] 2026-01-10 03:11:48,647 | INFO     | preparing for final server update for job 6963168911 in state='finished'
[2026-01-10 04:12:21] 2026-01-10 03:11:48,647 | INFO     | this job has now completed (state=finished)
[2026-01-10 04:12:21] 2026-01-10 03:11:48,647 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 04:12:21] 2026-01-10 03:11:48,647 | INFO     | log transfer has been attempted: DONE
[2026-01-10 04:12:21] 2026-01-10 03:11:48,648 | INFO     | job 6963168911 has finished - writing final server update
[2026-01-10 04:12:21] 2026-01-10 03:11:48,648 | INFO     | total number of processed events: 400 (read)
[2026-01-10 04:12:21] 2026-01-10 03:11:48,648 | INFO     | executing command: lscpu
[2026-01-10 04:12:21] 2026-01-10 03:11:48,678 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 04:12:21] 2026-01-10 03:11:50,179 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 04:12:21] 2026-01-10 03:11:50,183 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2380.2576718749997
[2026-01-10 04:12:21] 2026-01-10 03:11:50,188 | INFO     | using path: /tmp/job_11010976/atlas/pilot/slots/0/PanDA_Pilot-6963168911/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 04:12:21] 2026-01-10 03:11:50,189 | INFO     | extracted standard info from prmon json
[2026-01-10 04:12:21] 2026-01-10 03:11:50,189 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 04:12:21] 2026-01-10 03:11:50,189 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 04:12:21] 2026-01-10 03:11:50,189 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 04:12:21] 2026-01-10 03:11:50,189 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 04:12:21] 2026-01-10 03:11:50,190 | INFO     | fitting pss+swap vs Time
[2026-01-10 04:12:21] 2026-01-10 03:11:50,190 | INFO     | sum of square deviations: 85136480.0
[2026-01-10 04:12:21] 2026-01-10 03:11:50,190 | INFO     | sum of deviations: -7399598839.000001
[2026-01-10 04:12:21] 2026-01-10 03:11:50,190 | INFO     | mean x: 1768012606.0
[2026-01-10 04:12:21] 2026-01-10 03:11:50,190 | INFO     | mean y: 2657956.184615385
[2026-01-10 04:12:21] 2026-01-10 03:11:50,190 | INFO     | intersect: 153668677818.5863
[2026-01-10 04:12:21] 2026-01-10 03:11:50,190 | INFO     | chi2: 0.12874076729619371
[2026-01-10 04:12:21] 2026-01-10 03:11:50,190 | INFO     | current memory leak: -86.91 B/s (using 65 data points, chi2=0.13)
[2026-01-10 04:12:21] 2026-01-10 03:11:50,191 | INFO     | could have reported an average CPU frequency of 2417 MHz (6 samples)
[2026-01-10 04:12:21] 2026-01-10 03:11:50,191 | INFO     | ..............................
[2026-01-10 04:12:21] 2026-01-10 03:11:50,191 | INFO     | . Timing measurements:
[2026-01-10 04:12:21] 2026-01-10 03:11:50,191 | INFO     | . get job = 0 s
[2026-01-10 04:12:21] 2026-01-10 03:11:50,191 | INFO     | . initial setup = 1 s
[2026-01-10 04:12:21] 2026-01-10 03:11:50,191 | INFO     | . payload setup = 2 s
[2026-01-10 04:12:21] 2026-01-10 03:11:50,191 | INFO     | . stage-in = 0 s
[2026-01-10 04:12:21] 2026-01-10 03:11:50,191 | INFO     | . payload execution = 4354 s
[2026-01-10 04:12:21] 2026-01-10 03:11:50,191 | INFO     | . stage-out = 0 s
[2026-01-10 04:12:21] 2026-01-10 03:11:50,191 | INFO     | . log creation = 0 s
[2026-01-10 04:12:21] 2026-01-10 03:11:50,191 | INFO     | ..............................
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | 
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | job summary report
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | --------------------------------------------------
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | PanDA job id: 6963168911
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | task id: 47898826
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | errors: (none)
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | pilot state: finished 
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | transexitcode: 0
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | exeerrorcode: 0
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | exeerrordiag: 
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | exitcode: 0
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | exitmsg: OK
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | cpuconsumptiontime: 28508 s
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | nevents: 400
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | neventsw: 0
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | pid: 2213
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | pgrp: 2213
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | corecount: 8
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | event service: False
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | sizes: {0: 2283815, 1: 2284125, 2: 2284387, 11: 2284415, 4360: 2319654, 4362: 2319654, 4366: 2320004}
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | --------------------------------------------------
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | 
[2026-01-10 04:12:21] 2026-01-10 03:11:50,240 | INFO     | executing command: ls -lF /tmp/job_11010976/atlas/pilot/slots/0
[2026-01-10 04:12:21] 2026-01-10 03:11:50,248 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,248 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,248 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,248 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,248 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,248 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,248 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,248 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,248 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,248 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,248 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,249 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,249 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,249 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,249 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,249 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,249 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,249 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 04:12:21] 2026-01-10 03:11:50,249 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,249 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 04:12:21] 2026-01-10 03:11:50,249 | INFO     | job 6963168911 has completed (purged errors)
[2026-01-10 04:12:21] 2026-01-10 03:11:50,249 | INFO     | overall cleanup function is called
[2026-01-10 04:12:21] 2026-01-10 03:11:51,255 | INFO     | --- collectZombieJob: --- 10, [2213]
[2026-01-10 04:12:21] 2026-01-10 03:11:51,255 | INFO     | zombie collector waiting for pid 2213
[2026-01-10 04:12:21] 2026-01-10 03:11:51,255 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 04:12:21] 2026-01-10 03:11:51,255 | INFO     | collected zombie processes
[2026-01-10 04:12:21] 2026-01-10 03:11:51,255 | INFO     | will attempt to kill all subprocesses of pid=2213
[2026-01-10 04:12:21] 2026-01-10 03:11:51,340 | INFO     | process IDs to be killed: [2213] (in reverse order)
[2026-01-10 04:12:21] 2026-01-10 03:11:51,368 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 04:12:21] 2026-01-10 03:11:51,368 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 04:12:21] 2026-01-10 03:11:51,371 | INFO     | did not find any defunct processes belonging to 2213
[2026-01-10 04:12:21] 2026-01-10 03:11:51,374 | INFO     | did not find any defunct processes belonging to 2213
[2026-01-10 04:12:21] 2026-01-10 03:11:51,374 | INFO     | ready for new job
[2026-01-10 04:12:21] 2026-01-10 03:11:51,374 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 04:12:21] 2026-01-10 03:11:51,374 | INFO     | ***************************************
[2026-01-10 04:12:21] 2026-01-10 03:11:51,374 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 04:12:21] 2026-01-10 03:11:51,375 | INFO     | ***************************************
[2026-01-10 04:12:21] 2026-01-10 03:11:51,375 | INFO     | 
[2026-01-10 04:12:21] 2026-01-10 03:11:51,388 | INFO     | architecture information:
[2026-01-10 04:12:21] 2026-01-10 03:11:51,388 | INFO     | executing command: cat /etc/os-release
[2026-01-10 04:12:21] 2026-01-10 03:11:51,393 | INFO     | cat /etc/os-release:
[2026-01-10 04:12:21] NAME="CentOS Linux"
[2026-01-10 04:12:21] VERSION="7 (Core)"
[2026-01-10 04:12:21] ID="centos"
[2026-01-10 04:12:21] ID_LIKE="rhel fedora"
[2026-01-10 04:12:21] VERSION_ID="7"
[2026-01-10 04:12:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 04:12:21] ANSI_COLOR="0;31"
[2026-01-10 04:12:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 04:12:21] HOME_URL="https://www.centos.org/"
[2026-01-10 04:12:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 04:12:21] 
[2026-01-10 04:12:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 04:12:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 04:12:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 04:12:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 04:12:21] 
[2026-01-10 04:12:21] 2026-01-10 03:11:51,393 | INFO     | ***************************************
[2026-01-10 04:12:21] 2026-01-10 03:11:51,895 | INFO     | executing command: df -mP /tmp/job_11010976/atlas/pilot/slots/0
[2026-01-10 04:12:21] 2026-01-10 03:11:51,900 | INFO     | sufficient remaining disk space (227440328704 B)
[2026-01-10 04:12:21] 2026-01-10 03:11:51,900 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 04:12:21] 2026-01-10 03:11:51,900 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 04:12:21] 2026-01-10 03:11:51,900 | INFO     | update_server=False
[2026-01-10 04:12:21] 2026-01-10 03:11:51,900 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 04:12:21] 2026-01-10 03:11:51,900 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:12:21] 2026-01-10 03:11:51,900 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:12:21] 2026-01-10 03:11:51,901 | INFO     | aborting loop
[2026-01-10 04:12:21] 2026-01-10 03:11:51,946 | INFO     | all job control threads have been joined
[2026-01-10 04:12:21] 2026-01-10 03:11:52,524 | INFO     | all payload control threads have been joined
[2026-01-10 04:12:21] 2026-01-10 03:11:52,678 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 04:12:21] 2026-01-10 03:11:52,721 | INFO     | all data control threads have been joined
[2026-01-10 04:12:21] 2026-01-10 03:11:52,890 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 04:12:21] 2026-01-10 03:11:52,905 | INFO     | [job] job monitor thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:11:52,906 | INFO     | [job] queue monitor thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:11:52,906 | INFO     | [job] retrieve thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:11:52,951 | INFO     | [job] control thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:11:53,240 | INFO     | [payload] validate_post thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:11:53,369 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:11:53,390 | INFO     | [data] copytool_in thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:11:53,450 | INFO     | [job] validate thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:11:53,529 | INFO     | [payload] control thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:11:53,726 | INFO     | [data] control thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:11:54,193 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:11:54,292 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:11:54,301 | INFO     | [payload] failed_post thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:11:54,683 | INFO     | [data] copytool_out thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:11:56,895 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:11:58,437 | INFO     | [monitor] cgroup control has ended
[2026-01-10 04:12:21] 2026-01-10 03:12:02,007 | INFO     | job.realtimelogging is not enabled
[2026-01-10 04:12:21] 2026-01-10 03:12:03,012 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 04:12:21] 2026-01-10 03:12:05,013 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2026-01-10 04:12:21] 2026-01-10 03:12:10,038 | INFO     | all workflow threads have been joined
[2026-01-10 04:12:21] 2026-01-10 03:12:10,039 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 04:12:21] 2026-01-10 03:12:10,039 | INFO     | traces error code: 0
[2026-01-10 04:12:21] 2026-01-10 03:12:10,039 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 04:12:21] 2026-01-10 03:12:21,768 | INFO     | PID=27855 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 04:12:21] 2026-01-10 03:12:21,768 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 04:12:21] 2026-01-10 03:12:21,768 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 04:12:21] 2026-01-10 03:12:21,768 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 04:12:21] 2026-01-10 03:12:21,768 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 04:12:21] 2026-01-10 03:12:21,768 | CRITICAL | thread 'MainThread' is not alive
[2026-01-10 04:12:21] 2026-01-10 03:12:21,768 | INFO     | [monitor] control thread has ended
[2026-01-10 04:12:21] 2026-01-10 03:12:21,820 [wrapper] ==== pilot stdout END ====
[2026-01-10 04:12:21] 2026-01-10 03:12:21,821 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 04:12:21] 2026-01-10 03:12:21,822 [wrapper] pilotpid: 27855
[2026-01-10 04:12:21] 2026-01-10 03:12:21,823 [wrapper] Pilot exit status: 0
[2026-01-10 04:12:21] 2026-01-10 03:12:21,828 [wrapper] pandaids: 6963168911
[2026-01-10 04:12:21] 2026-01-10 03:12:21,847 [wrapper] cleanup supervisor_pilot 23668 27856
[2026-01-10 04:12:21] 2026-01-10 03:12:21,848 [wrapper] Test setup, not cleaning
[2026-01-10 04:12:21] 2026-01-10 03:12:21,849 [wrapper] apfmon messages muted
[2026-01-10 04:12:21] 2026-01-10 03:12:21,850 [wrapper] ==== wrapper stdout END ====
[2026-01-10 04:12:21] 2026-01-10 03:12:21,851 [wrapper] ==== wrapper stderr END ====
[2026-01-10 04:12:21]  *** Error codes and diagnostics ***
[2026-01-10 04:12:21]     "exeErrorCode": 0,
[2026-01-10 04:12:21]     "exeErrorDiag": "",
[2026-01-10 04:12:21]     "pilotErrorCode": 0,
[2026-01-10 04:12:21]     "pilotErrorDiag": "",
[2026-01-10 04:12:21]  *** Listing of results directory ***
[2026-01-10 04:12:21] total 439604
[2026-01-10 04:12:21] -rwx------ 1 mf493845 unix-user     36322 Jan  9 02:01 runpilot2-wrapper.sh
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user    579449 Jan  9 02:06 pilot3.tar.gz
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user      5112 Jan  9 02:06 queuedata.json
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user       100 Jan 10 02:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 04:12:21] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 10 02:01 run_atlas
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user       105 Jan 10 02:01 job.xml
[2026-01-10 04:12:21] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 02:58 start_atlas.sh
[2026-01-10 04:12:21] drwxrwx--x 2 mf493845 unix-user       100 Jan 10 02:58 shared
[2026-01-10 04:12:21] -rw-r--r-- 2 mf493845 unix-user    592405 Jan 10 02:58 input.tar.gz
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user      6389 Jan 10 02:58 init_data.xml
[2026-01-10 04:12:21] -rw-r--r-- 2 mf493845 unix-user 224448499 Jan 10 02:58 EVNT.47898824._001396.pool.root.1
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user         0 Jan 10 02:58 boinc_setup_complete
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user      8192 Jan 10 02:58 boinc_mmap_file
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user         0 Jan 10 02:58 boinc_lockfile
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user      2520 Jan 10 02:58 pandaJob.out
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user    989382 Jan 10 02:58 agis_schedconf.cvmfs.json
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user   1516240 Jan 10 02:58 agis_ddmendpoints.agis.ALL.json
[2026-01-10 04:12:21] drwx------ 5 mf493845 unix-user       440 Jan 10 02:58 pilot3
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user 219880952 Jan 10 04:11 HITS.47898826._036438.pool.root.1
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user        95 Jan 10 04:11 pilot_heartbeat.json
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user      1014 Jan 10 04:11 memory_monitor_summary.json
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user    323187 Jan 10 04:11 log.47898826._036438.job.log.tgz.1
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user      7773 Jan 10 04:11 heartbeat.json
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user       815 Jan 10 04:12 pilotlog.txt
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user    651207 Jan 10 04:12 log.47898826._036438.job.log.1
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user       357 Jan 10 04:12 output.list
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user       620 Jan 10 04:12 runtime_log
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user    993280 Jan 10 04:12 result.tar.gz
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user       646 Jan 10 04:12 YmyNDmZ3Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7ngKDmXYyFBn.diag
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user      9220 Jan 10 04:12 runtime_log.err
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user     23117 Jan 10 04:12 stderr.txt
[2026-01-10 04:12:21] HITS file was successfully produced:
[2026-01-10 04:12:21] -rw------- 1 mf493845 unix-user 219880952 Jan 10 04:11 shared/HITS.pool.root.1
[2026-01-10 04:12:21]  *** Contents of shared directory: ***
[2026-01-10 04:12:21] total 435484
[2026-01-10 04:12:21] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 02:58 start_atlas.sh
[2026-01-10 04:12:21] -rw-r--r-- 2 mf493845 unix-user    592405 Jan 10 02:58 input.tar.gz
[2026-01-10 04:12:21] -rw-r--r-- 2 mf493845 unix-user 224448499 Jan 10 02:58 ATLAS.root_0
[2026-01-10 04:12:22] -rw------- 1 mf493845 unix-user 219880952 Jan 10 04:11 HITS.pool.root.1
[2026-01-10 04:12:22] -rw------- 1 mf493845 unix-user    993280 Jan 10 04:12 result.tar.gz
04:12:23 (24105): run_atlas exited; CPU time 28553.009561
04:12:23 (24105): called boinc_finish(0)

</stderr_txt>
]]>

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