Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:21:34 (3827665): wrapper (7.7.26015): starting
15:21:34 (3827665): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 15:21:34] Arguments: --nthreads 3
[2026-01-10 15:21:34] Threads: 3
[2026-01-10 15:21:34] Checking for CVMFS
[2026-01-10 15:21:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 15:21:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 15:21:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 15:21:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 15:21:34] 2.9.2.0 2900183 3786 86736 154982 2 56 21331520 36864000 0 130560 0 2345621 99.988 137296 3269 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 15:21:34] CVMFS is ok
[2026-01-10 15:21:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 15:21:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 15:21:34] Further information can be found at the LHC@home message board.
[2026-01-10 15:21:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 15:21:34] Checking for apptainer binary...
[2026-01-10 15:21:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 15:21:34] Running /usr/bin/apptainer --version
[2026-01-10 15:21:34] apptainer version 1.4.1-1.1
[2026-01-10 15:21:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 15:21:34] thA312a
[2026-01-10 15:21:34] apptainer works
[2026-01-10 15:21:34] Set ATHENA_PROC_NUMBER=3
[2026-01-10 15:21:34] Set ATHENA_CORE_NUMBER=3
[2026-01-10 15:21:34] Starting ATLAS job with PandaID=6962322831
[2026-01-10 15:21:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 17:13:54]  *** The last 200 lines of the pilot log: ***
[2026-01-10 17:13:54] 2026-01-10 16:13:12,012 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 17:13:54] 2026-01-10 16:13:12,012 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 17:13:54] 2026-01-10 16:13:12,012 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 17:13:54] 2026-01-10 16:13:12,012 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 17:13:54] 2026-01-10 16:13:12,012 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 17:13:54] 2026-01-10 16:13:12,012 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 17:13:54] 2026-01-10 16:13:12,012 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 17:13:54] 2026-01-10 16:13:12,013 | INFO     | job 6962322831 has completed (purged errors)
[2026-01-10 17:13:54] 2026-01-10 16:13:12,013 | INFO     | overall cleanup function is called
[2026-01-10 17:13:54] 2026-01-10 16:13:13,019 | INFO     | --- collectZombieJob: --- 10, [3837855]
[2026-01-10 17:13:54] 2026-01-10 16:13:13,019 | INFO     | zombie collector waiting for pid 3837855
[2026-01-10 17:13:54] 2026-01-10 16:13:13,019 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 17:13:54] 2026-01-10 16:13:13,019 | INFO     | collected zombie processes
[2026-01-10 17:13:54] 2026-01-10 16:13:13,020 | INFO     | will attempt to kill all subprocesses of pid=3837855
[2026-01-10 17:13:54] 2026-01-10 16:13:13,069 | INFO     | process IDs to be killed: [3837855] (in reverse order)
[2026-01-10 17:13:54] 2026-01-10 16:13:13,097 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 17:13:54] 2026-01-10 16:13:13,097 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 17:13:54] 2026-01-10 16:13:13,099 | INFO     | did not find any defunct processes belonging to 3837855
[2026-01-10 17:13:54] 2026-01-10 16:13:13,100 | INFO     | did not find any defunct processes belonging to 3837855
[2026-01-10 17:13:54] 2026-01-10 16:13:13,100 | INFO     | ready for new job
[2026-01-10 17:13:54] 2026-01-10 16:13:13,100 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 17:13:54] 2026-01-10 16:13:13,101 | INFO     | ***************************************
[2026-01-10 17:13:54] 2026-01-10 16:13:13,101 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 17:13:54] 2026-01-10 16:13:13,101 | INFO     | ***************************************
[2026-01-10 17:13:54] 2026-01-10 16:13:13,101 | INFO     | 
[2026-01-10 17:13:54] 2026-01-10 16:13:13,102 | INFO     | architecture information:
[2026-01-10 17:13:54] 2026-01-10 16:13:13,102 | INFO     | executing command: cat /etc/os-release
[2026-01-10 17:13:54] 2026-01-10 16:13:13,111 | INFO     | cat /etc/os-release:
[2026-01-10 17:13:54] NAME="CentOS Linux"
[2026-01-10 17:13:54] VERSION="7 (Core)"
[2026-01-10 17:13:54] ID="centos"
[2026-01-10 17:13:54] ID_LIKE="rhel fedora"
[2026-01-10 17:13:54] VERSION_ID="7"
[2026-01-10 17:13:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 17:13:54] ANSI_COLOR="0;31"
[2026-01-10 17:13:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 17:13:54] HOME_URL="https://www.centos.org/"
[2026-01-10 17:13:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 17:13:54] 
[2026-01-10 17:13:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 17:13:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 17:13:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 17:13:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 17:13:54] 
[2026-01-10 17:13:54] 2026-01-10 16:13:13,111 | INFO     | ***************************************
[2026-01-10 17:13:54] 2026-01-10 16:13:13,615 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 17:13:54] 2026-01-10 16:13:13,628 | INFO     | sufficient remaining disk space (284482863104 B)
[2026-01-10 17:13:54] 2026-01-10 16:13:13,629 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 17:13:54] 2026-01-10 16:13:13,629 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 17:13:54] 2026-01-10 16:13:13,629 | INFO     | update_server=False
[2026-01-10 17:13:54] 2026-01-10 16:13:13,629 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 17:13:54] 2026-01-10 16:13:13,629 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 17:13:54] 2026-01-10 16:13:13,629 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 17:13:54] 2026-01-10 16:13:13,629 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 17:13:54] 2026-01-10 16:13:13,629 | INFO     | aborting loop
[2026-01-10 17:13:54] 2026-01-10 16:13:14,195 | INFO     | all data control threads have been joined
[2026-01-10 17:13:54] 2026-01-10 16:13:14,605 | INFO     | all job control threads have been joined
[2026-01-10 17:13:54] 2026-01-10 16:13:14,635 | INFO     | [job] queue monitor thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:14,635 | INFO     | [job] retrieve thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:14,635 | INFO     | [job] job monitor thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:14,850 | INFO     | all payload control threads have been joined
[2026-01-10 17:13:54] 2026-01-10 16:13:15,117 | INFO     | [payload] validate_post thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:15,200 | INFO     | [data] control thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:15,466 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 17:13:54] 2026-01-10 16:13:15,497 | INFO     | [data] copytool_in thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:15,611 | INFO     | [job] control thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:15,634 | INFO     | [data] copytool_out thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:15,699 | INFO     | [payload] failed_post thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:15,754 | INFO     | [job] validate thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:15,830 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:15,841 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:15,855 | INFO     | [payload] control thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:15,994 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:19,473 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:24,199 | INFO     | job.realtimelogging is not enabled
[2026-01-10 17:13:54] 2026-01-10 16:13:25,204 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 17:13:54] 2026-01-10 16:13:44,241 | INFO     | PID=3831403 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 17:13:54] 2026-01-10 16:13:44,242 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 17:13:54] 2026-01-10 16:13:44,242 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 17:13:54] 2026-01-10 16:13:44,242 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 17:13:54] 2026-01-10 16:13:47,686 | INFO     | [monitor] cgroup control has ended
[2026-01-10 17:13:54] 2026-01-10 16:13:49,700 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139985425041216)>', '<ExcThread(monitor, started 139984795334400)>']
[2026-01-10 17:13:54] 2026-01-10 16:13:50,274 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 17:13:54] 2026-01-10 16:13:50,274 | INFO     | [monitor] control thread has ended
[2026-01-10 17:13:54] 2026-01-10 16:13:54,726 | INFO     | all workflow threads have been joined
[2026-01-10 17:13:54] 2026-01-10 16:13:54,726 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 17:13:54] 2026-01-10 16:13:54,726 | INFO     | traces error code: 0
[2026-01-10 17:13:54] 2026-01-10 16:13:54,726 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 17:13:54] 2026-01-10 16:13:54,781 [wrapper] ==== pilot stdout END ====
[2026-01-10 17:13:54] 2026-01-10 16:13:54,783 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 17:13:54] 2026-01-10 16:13:54,786 [wrapper] pilotpid: 3831403
[2026-01-10 17:13:54] 2026-01-10 16:13:54,788 [wrapper] Pilot exit status: 0
[2026-01-10 17:13:54] 2026-01-10 16:13:54,796 [wrapper] pandaids: 6962322831
[2026-01-10 17:13:54] 2026-01-10 16:13:54,814 [wrapper] cleanup supervisor_pilot 3852933 3831404
[2026-01-10 17:13:54] 2026-01-10 16:13:54,817 [wrapper] Test setup, not cleaning
[2026-01-10 17:13:54] 2026-01-10 16:13:54,819 [wrapper] apfmon messages muted
[2026-01-10 17:13:54] 2026-01-10 16:13:54,822 [wrapper] ==== wrapper stdout END ====
[2026-01-10 17:13:54] 2026-01-10 16:13:54,824 [wrapper] ==== wrapper stderr END ====
[2026-01-10 17:13:54]  *** Error codes and diagnostics ***
[2026-01-10 17:13:54]     "exeErrorCode": 0,
[2026-01-10 17:13:54]     "exeErrorDiag": "",
[2026-01-10 17:13:54]     "pilotErrorCode": 0,
[2026-01-10 17:13:54]     "pilotErrorDiag": "",
[2026-01-10 17:13:54]  *** Listing of results directory ***
[2026-01-10 17:13:54] total 441044
[2026-01-10 17:13:54] -rw-r--r-- 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-10 17:13:54] -rwx------ 1 boinc boinc     36322 Jan  7 22:06 runpilot2-wrapper.sh
[2026-01-10 17:13:54] -rw-r--r-- 1 boinc boinc      5112 Jan  7 22:12 queuedata.json
[2026-01-10 17:13:54] -rw-r--r-- 1 boinc boinc       100 Jan 10 15:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 17:13:54] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 15:21 run_atlas
[2026-01-10 17:13:54] -rw-r--r-- 1 boinc boinc       105 Jan 10 15:21 job.xml
[2026-01-10 17:13:54] -rw-r--r-- 2 boinc boinc 226733262 Jan 10 15:21 EVNT.47898824._000731.pool.root.1
[2026-01-10 17:13:54] -rw-r--r-- 2 boinc boinc    592394 Jan 10 15:21 input.tar.gz
[2026-01-10 17:13:54] -rw-r--r-- 2 boinc boinc     15847 Jan 10 15:21 start_atlas.sh
[2026-01-10 17:13:54] drwxrwx--x 2 boinc boinc      4096 Jan 10 15:21 shared
[2026-01-10 17:13:54] -rw-r--r-- 1 boinc boinc         0 Jan 10 15:21 boinc_setup_complete
[2026-01-10 17:13:54] -rw-r--r-- 1 boinc boinc      6447 Jan 10 15:21 init_data.xml
[2026-01-10 17:13:54] -rw-r--r-- 1 boinc boinc         0 Jan 10 15:21 boinc_lockfile
[2026-01-10 17:13:54] -rw-r--r-- 1 boinc boinc      2516 Jan 10 15:21 pandaJob.out
[2026-01-10 17:13:54] -rw------- 1 boinc boinc    989556 Jan 10 15:21 agis_schedconf.cvmfs.json
[2026-01-10 17:13:54] -rw------- 1 boinc boinc   1516240 Jan 10 15:21 agis_ddmendpoints.agis.ALL.json
[2026-01-10 17:13:54] drwx------ 5 boinc boinc      4096 Jan 10 15:21 pilot3
[2026-01-10 17:13:54] -rw------- 1 boinc boinc 218535276 Jan 10 17:12 HITS.47898826._015666.pool.root.1
[2026-01-10 17:13:54] -rw-r--r-- 1 boinc boinc       529 Jan 10 17:12 boinc_task_state.xml
[2026-01-10 17:13:54] -rw------- 1 boinc boinc      1016 Jan 10 17:13 memory_monitor_summary.json
[2026-01-10 17:13:54] -rw------- 1 boinc boinc    263968 Jan 10 17:13 log.47898826._015666.job.log.tgz.1
[2026-01-10 17:13:54] -rw------- 1 boinc boinc      7746 Jan 10 17:13 heartbeat.json
[2026-01-10 17:13:54] -rw-r--r-- 1 boinc boinc        27 Jan 10 17:13 wrapper_checkpoint.txt
[2026-01-10 17:13:54] -rw-r--r-- 1 boinc boinc      8192 Jan 10 17:13 boinc_mmap_file
[2026-01-10 17:13:54] -rw------- 1 boinc boinc        95 Jan 10 17:13 pilot_heartbeat.json
[2026-01-10 17:13:54] -rw------- 1 boinc boinc      4824 Jan 10 17:13 pilotlog.txt
[2026-01-10 17:13:54] -rw------- 1 boinc boinc    965945 Jan 10 17:13 log.47898826._015666.job.log.1
[2026-01-10 17:13:54] -rw------- 1 boinc boinc       357 Jan 10 17:13 output.list
[2026-01-10 17:13:54] -rw-r--r-- 1 boinc boinc       620 Jan 10 17:13 runtime_log
[2026-01-10 17:13:54] -rw------- 1 boinc boinc   1249280 Jan 10 17:13 result.tar.gz
[2026-01-10 17:13:54] -rw-r--r-- 1 boinc boinc      8902 Jan 10 17:13 runtime_log.err
[2026-01-10 17:13:54] -rw------- 1 boinc boinc       660 Jan 10 17:13 LSVKDmhupx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKvdKDmbrGvGm.diag
[2026-01-10 17:13:54] -rw-r--r-- 1 boinc boinc     11616 Jan 10 17:13 stderr.txt
[2026-01-10 17:13:54] HITS file was successfully produced:
[2026-01-10 17:13:54] -rw------- 1 boinc boinc 218535276 Jan 10 17:12 shared/HITS.pool.root.1
[2026-01-10 17:13:54]  *** Contents of shared directory: ***
[2026-01-10 17:13:54] total 436660
[2026-01-10 17:13:54] -rw-r--r-- 2 boinc boinc 226733262 Jan 10 15:21 ATLAS.root_0
[2026-01-10 17:13:54] -rw-r--r-- 2 boinc boinc    592394 Jan 10 15:21 input.tar.gz
[2026-01-10 17:13:54] -rw-r--r-- 2 boinc boinc     15847 Jan 10 15:21 start_atlas.sh
[2026-01-10 17:13:54] -rw------- 1 boinc boinc 218535276 Jan 10 17:12 HITS.pool.root.1
[2026-01-10 17:13:54] -rw------- 1 boinc boinc   1249280 Jan 10 17:13 result.tar.gz
17:13:55 (3827665): run_atlas exited; CPU time 19454.303074
17:13:55 (3827665): called boinc_finish(0)

</stderr_txt>
]]>

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