Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:12:55 (194313): wrapper (7.7.26015): starting
22:12:55 (194313): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 22:12:55] Arguments: --nthreads 9
[2026-01-09 22:12:55] Threads: 9
[2026-01-09 22:12:55] Checking for CVMFS
[2026-01-09 22:12:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 22:12:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 22:12:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 22:12:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 22:12:58] 2.13.3.0 11959 94296 351660 154965 2 130 19008901 32935936 18487 16776704 0 396702732 99.495 550448700 34172 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 22:12:58] CVMFS is ok
[2026-01-09 22:12:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 22:12:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 22:12:58] Further information can be found at the LHC@home message board.
[2026-01-09 22:12:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 22:12:58] Checking for apptainer binary...
[2026-01-09 22:12:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 22:12:58] Running /usr/bin/apptainer --version
[2026-01-09 22:12:58] apptainer version 1.4.5-2.el9
[2026-01-09 22:12:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 22:12:58] c6-8-25-4.aglt2.org
[2026-01-09 22:12:58] apptainer works
[2026-01-09 22:12:59] Set ATHENA_PROC_NUMBER=9
[2026-01-09 22:12:59] Set ATHENA_CORE_NUMBER=9
[2026-01-09 22:12:59] Starting ATLAS job with PandaID=6963199517
[2026-01-09 22:12:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 09:04:38]  *** The last 200 lines of the pilot log: ***
[2026-01-10 09:04:38] 2026-01-10 14:03:57,234 | INFO     | sum of deviations: 241131662118.8426
[2026-01-10 09:04:38] 2026-01-10 14:03:57,234 | INFO     | mean x: 1768034394.012559
[2026-01-10 09:04:38] 2026-01-10 14:03:57,235 | INFO     | mean y: 2931192.519623234
[2026-01-10 09:04:38] 2026-01-10 14:03:57,235 | INFO     | intersect: -5316293791.312082
[2026-01-10 09:04:38] 2026-01-10 14:03:57,236 | INFO     | chi2: 12.557557188204518
[2026-01-10 09:04:38] 2026-01-10 14:03:57,245 | INFO     | sum of square deviations: 78276943132.75868
[2026-01-10 09:04:38] 2026-01-10 14:03:57,266 | INFO     | sum of deviations: 463582505647.7965
[2026-01-10 09:04:38] 2026-01-10 14:03:57,266 | INFO     | mean x: 1768034241.544304
[2026-01-10 09:04:38] 2026-01-10 14:03:57,266 | INFO     | mean y: 2949307.4715189873
[2026-01-10 09:04:38] 2026-01-10 14:03:57,266 | INFO     | intersect: -10467946858.927155
[2026-01-10 09:04:38] 2026-01-10 14:03:57,275 | INFO     | chi2: 9.173812822967758
[2026-01-10 09:04:38] 2026-01-10 14:03:57,276 | INFO     | current chi2=9.173812822967758 (change=26.945880592247324 %)
[2026-01-10 09:04:38] 2026-01-10 14:03:57,277 | INFO     | sum of square deviations: 76434562490.32524
[2026-01-10 09:04:38] 2026-01-10 14:03:57,302 | INFO     | sum of deviations: 717825206375.1241
[2026-01-10 09:04:38] 2026-01-10 14:03:57,302 | INFO     | mean x: 1768034089.076555
[2026-01-10 09:04:38] 2026-01-10 14:03:57,302 | INFO     | mean y: 2970347.53907496
[2026-01-10 09:04:38] 2026-01-10 14:03:57,302 | INFO     | intersect: -16601290781.453123
[2026-01-10 09:04:38] 2026-01-10 14:03:57,307 | INFO     | chi2: 5.025707776243627
[2026-01-10 09:04:38] 2026-01-10 14:03:57,307 | INFO     | current chi2=5.025707776243627 (change=45.21680490732102 %)
[2026-01-10 09:04:38] 2026-01-10 14:03:57,308 | INFO     | sum of square deviations: 74621192222.91411
[2026-01-10 09:04:38] 2026-01-10 14:03:57,332 | INFO     | sum of deviations: 819660940054.9263
[2026-01-10 09:04:38] 2026-01-10 14:03:57,332 | INFO     | mean x: 1768033936.6028938
[2026-01-10 09:04:38] 2026-01-10 14:03:57,332 | INFO     | mean y: 2978901.4855305464
[2026-01-10 09:04:38] 2026-01-10 14:03:57,332 | INFO     | intersect: -19417621538.612156
[2026-01-10 09:04:38] 2026-01-10 14:03:57,333 | INFO     | chi2: 4.224973340687529
[2026-01-10 09:04:38] 2026-01-10 14:03:57,334 | INFO     | current chi2=4.224973340687529 (change=15.932769496490549 %)
[2026-01-10 09:04:38] 2026-01-10 14:03:57,334 | INFO     | right removable region: 621
[2026-01-10 09:04:38] 2026-01-10 14:03:57,343 | INFO     | sum of square deviations: 78275383972.75868
[2026-01-10 09:04:38] 2026-01-10 14:03:57,368 | INFO     | sum of deviations: 12021866109.44313
[2026-01-10 09:04:38] 2026-01-10 14:03:57,368 | INFO     | mean x: 1768034546.544304
[2026-01-10 09:04:38] 2026-01-10 14:03:57,368 | INFO     | mean y: 2949833.359177215
[2026-01-10 09:04:38] 2026-01-10 14:03:57,368 | INFO     | intersect: -268592425.7349818
[2026-01-10 09:04:38] 2026-01-10 14:03:57,369 | INFO     | chi2: 9.313715687248042
[2026-01-10 09:04:38] 2026-01-10 14:03:57,369 | INFO     | current chi2=9.313715687248042 (change=25.831787602794755 %)
[2026-01-10 09:04:38] 2026-01-10 14:03:57,378 | INFO     | sum of square deviations: 76431828639.69637
[2026-01-10 09:04:38] 2026-01-10 14:03:57,403 | INFO     | sum of deviations: -72252081955.54573
[2026-01-10 09:04:38] 2026-01-10 14:03:57,403 | INFO     | mean x: 1768034699.060606
[2026-01-10 09:04:38] 2026-01-10 14:03:57,404 | INFO     | mean y: 2956788.014354067
[2026-01-10 09:04:38] 2026-01-10 14:03:57,404 | INFO     | intersect: 1674304840.9173968
[2026-01-10 09:04:38] 2026-01-10 14:03:57,405 | INFO     | chi2: 8.773673286938529
[2026-01-10 09:04:38] 2026-01-10 14:03:57,405 | INFO     | current chi2=8.773673286938529 (change=5.798356085197201 %)
[2026-01-10 09:04:38] 2026-01-10 14:03:57,405 | INFO     | left removable region: 20
[2026-01-10 09:04:38] 2026-01-10 14:03:57,406 | INFO     | sum of square deviations: 67314906719.114914
[2026-01-10 09:04:38] 2026-01-10 14:03:57,462 | INFO     | sum of deviations: 455627360864.3959
[2026-01-10 09:04:38] 2026-01-10 14:03:57,462 | INFO     | mean x: 1768034516.1464226
[2026-01-10 09:04:38] 2026-01-10 14:03:57,462 | INFO     | mean y: 3012191.8818635605
[2026-01-10 09:04:38] 2026-01-10 14:03:57,463 | INFO     | intersect: -11964097914.507149
[2026-01-10 09:04:38] 2026-01-10 14:03:57,463 | INFO     | chi2: 0.20392067303841846
[2026-01-10 09:04:38] 2026-01-10 14:03:57,464 | INFO     | current memory leak: 6.77 B/s (using 601 data points, chi2=0.20)
[2026-01-10 09:04:38] 2026-01-10 14:03:57,464 | INFO     | could have reported an average CPU frequency of 2664 MHz (25 samples)
[2026-01-10 09:04:38] 2026-01-10 14:03:57,465 | INFO     | ..............................
[2026-01-10 09:04:38] 2026-01-10 14:03:57,465 | INFO     | . Timing measurements:
[2026-01-10 09:04:38] 2026-01-10 14:03:57,465 | INFO     | . get job = 0 s
[2026-01-10 09:04:38] 2026-01-10 14:03:57,465 | INFO     | . initial setup = 5 s
[2026-01-10 09:04:38] 2026-01-10 14:03:57,465 | INFO     | . payload setup = 48 s
[2026-01-10 09:04:38] 2026-01-10 14:03:57,465 | INFO     | . stage-in = 0 s
[2026-01-10 09:04:38] 2026-01-10 14:03:57,465 | INFO     | . payload execution = 38831 s
[2026-01-10 09:04:38] 2026-01-10 14:03:57,465 | INFO     | . stage-out = 5 s
[2026-01-10 09:04:38] 2026-01-10 14:03:57,465 | INFO     | . log creation = 1 s
[2026-01-10 09:04:38] 2026-01-10 14:03:57,465 | INFO     | ..............................
[2026-01-10 09:04:38] 2026-01-10 14:03:58,271 | INFO     | 
[2026-01-10 09:04:38] 2026-01-10 14:03:58,271 | INFO     | job summary report
[2026-01-10 09:04:38] 2026-01-10 14:03:58,271 | INFO     | --------------------------------------------------
[2026-01-10 09:04:38] 2026-01-10 14:03:58,271 | INFO     | PanDA job id: 6963199517
[2026-01-10 09:04:38] 2026-01-10 14:03:58,271 | INFO     | task id: 47962010
[2026-01-10 09:04:38] 2026-01-10 14:03:58,271 | INFO     | errors: (none)
[2026-01-10 09:04:38] 2026-01-10 14:03:58,272 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 09:04:38] 2026-01-10 14:03:58,272 | INFO     | pilot state: finished 
[2026-01-10 09:04:38] 2026-01-10 14:03:58,272 | INFO     | transexitcode: 0
[2026-01-10 09:04:38] 2026-01-10 14:03:58,272 | INFO     | exeerrorcode: 0
[2026-01-10 09:04:38] 2026-01-10 14:03:58,272 | INFO     | exeerrordiag: 
[2026-01-10 09:04:38] 2026-01-10 14:03:58,272 | INFO     | exitcode: 0
[2026-01-10 09:04:38] 2026-01-10 14:03:58,272 | INFO     | exitmsg: OK
[2026-01-10 09:04:38] 2026-01-10 14:03:58,272 | INFO     | cpuconsumptiontime: 139004 s
[2026-01-10 09:04:38] 2026-01-10 14:03:58,272 | INFO     | nevents: 450
[2026-01-10 09:04:38] 2026-01-10 14:03:58,272 | INFO     | neventsw: 0
[2026-01-10 09:04:38] 2026-01-10 14:03:58,272 | INFO     | pid: 209893
[2026-01-10 09:04:38] 2026-01-10 14:03:58,272 | INFO     | pgrp: 209893
[2026-01-10 09:04:38] 2026-01-10 14:03:58,272 | INFO     | corecount: 9
[2026-01-10 09:04:38] 2026-01-10 14:03:58,273 | INFO     | event service: False
[2026-01-10 09:04:38] 2026-01-10 14:03:58,273 | INFO     | sizes: {0: 2283786, 1: 2284471, 2: 2284670, 14: 2284670, 25: 2284698, 30: 2284988, 36: 2285144, 38884: 2327697, 38891: 2336691, 38892: 2336747, 38923: 2337057}
[2026-01-10 09:04:38] 2026-01-10 14:03:58,273 | INFO     | --------------------------------------------------
[2026-01-10 09:04:38] 2026-01-10 14:03:58,273 | INFO     | 
[2026-01-10 09:04:38] 2026-01-10 14:03:58,273 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 09:04:38] 2026-01-10 14:03:58,345 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,345 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,345 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,346 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,346 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,346 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,346 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,346 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,346 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,346 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,346 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,346 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,346 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,346 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,346 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,347 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,347 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,347 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 09:04:38] 2026-01-10 14:03:58,347 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,347 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:58,347 | INFO     | job 6963199517 has completed (purged errors)
[2026-01-10 09:04:38] 2026-01-10 14:03:58,347 | INFO     | overall cleanup function is called
[2026-01-10 09:04:38] 2026-01-10 14:03:59,454 | INFO     | --- collectZombieJob: --- 10, [209893]
[2026-01-10 09:04:38] 2026-01-10 14:03:59,454 | INFO     | zombie collector waiting for pid 209893
[2026-01-10 09:04:38] 2026-01-10 14:03:59,454 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 09:04:38] 2026-01-10 14:03:59,454 | INFO     | collected zombie processes
[2026-01-10 09:04:38] 2026-01-10 14:03:59,454 | INFO     | will attempt to kill all subprocesses of pid=209893
[2026-01-10 09:04:38] 2026-01-10 14:04:01,170 | INFO     | PID=201141 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 09:04:38] 2026-01-10 14:04:01,170 | INFO     | .. there are 19 such processes running
[2026-01-10 09:04:38] 2026-01-10 14:04:02,815 | INFO     | process IDs to be killed: [209893] (in reverse order)
[2026-01-10 09:04:38] 2026-01-10 14:04:03,339 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 09:04:38] 2026-01-10 14:04:03,340 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 09:04:38] 2026-01-10 14:04:03,392 | INFO     | did not find any defunct processes belonging to 209893
[2026-01-10 09:04:38] 2026-01-10 14:04:03,468 | INFO     | did not find any defunct processes belonging to 209893
[2026-01-10 09:04:38] 2026-01-10 14:04:03,468 | INFO     | ready for new job
[2026-01-10 09:04:38] 2026-01-10 14:04:03,468 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 09:04:38] 2026-01-10 14:04:03,490 | INFO     | ***************************************
[2026-01-10 09:04:38] 2026-01-10 14:04:03,491 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 09:04:38] 2026-01-10 14:04:03,491 | INFO     | ***************************************
[2026-01-10 09:04:38] 2026-01-10 14:04:03,491 | INFO     | 
[2026-01-10 09:04:38] 2026-01-10 14:04:03,516 | INFO     | architecture information:
[2026-01-10 09:04:38] 2026-01-10 14:04:03,567 | INFO     | executing command: cat /etc/os-release
[2026-01-10 09:04:38] 2026-01-10 14:04:03,622 | INFO     | cat /etc/os-release:
[2026-01-10 09:04:38] NAME="CentOS Linux"
[2026-01-10 09:04:38] VERSION="7 (Core)"
[2026-01-10 09:04:38] ID="centos"
[2026-01-10 09:04:38] ID_LIKE="rhel fedora"
[2026-01-10 09:04:38] VERSION_ID="7"
[2026-01-10 09:04:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 09:04:38] ANSI_COLOR="0;31"
[2026-01-10 09:04:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 09:04:38] HOME_URL="https://www.centos.org/"
[2026-01-10 09:04:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 09:04:38] 
[2026-01-10 09:04:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 09:04:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 09:04:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 09:04:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 09:04:38] 
[2026-01-10 09:04:38] 2026-01-10 14:04:03,623 | INFO     | ***************************************
[2026-01-10 09:04:38] 2026-01-10 14:04:04,134 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 09:04:38] 2026-01-10 14:04:04,212 | INFO     | sufficient remaining disk space (72448212992 B)
[2026-01-10 09:04:38] 2026-01-10 14:04:04,212 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 09:04:38] 2026-01-10 14:04:04,213 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 09:04:38] 2026-01-10 14:04:04,213 | INFO     | update_server=False
[2026-01-10 09:04:38] 2026-01-10 14:04:04,213 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 09:04:38] 2026-01-10 14:04:04,213 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:04:38] 2026-01-10 14:04:04,213 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 09:04:38] 2026-01-10 14:04:04,541 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 09:04:38] 2026-01-10 14:04:04,541 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 09:04:38] 2026-01-10 14:04:04,541 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:04:38] 2026-01-10 14:04:04,541 | INFO     | will abort loop
[2026-01-10 09:04:38] 2026-01-10 14:04:04,717 | INFO     | all data control threads have been joined
[2026-01-10 09:04:38] 2026-01-10 14:04:05,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 09:04:38] 2026-01-10 14:04:05,219 | INFO     | [job] retrieve thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:05,219 | INFO     | [job] queue monitor thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:05,263 | INFO     | all job control threads have been joined
[2026-01-10 09:04:38] 2026-01-10 14:04:05,271 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:05,488 | INFO     | all payload control threads have been joined
[2026-01-10 09:04:38] 2026-01-10 14:04:05,546 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:05,546 | INFO     | [job] job monitor thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:05,726 | INFO     | [data] control thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:06,220 | INFO     | [data] copytool_out thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:06,238 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:06,266 | INFO     | [data] copytool_in thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:06,270 | INFO     | [job] control thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:06,501 | INFO     | [payload] control thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:06,593 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:06,593 | INFO     | [payload] failed_post thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:06,700 | INFO     | [job] validate thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:06,820 | INFO     | [payload] validate_post thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:09,131 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:15,692 | INFO     | [monitor] cgroup control has ended
[2026-01-10 09:04:38] 2026-01-10 14:04:16,513 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140426909017920)>', '<ExcThread(monitor, started 140426421982976)>']
[2026-01-10 09:04:38] 2026-01-10 14:04:21,539 | INFO     | all workflow threads have been joined
[2026-01-10 09:04:38] 2026-01-10 14:04:21,539 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 09:04:38] 2026-01-10 14:04:21,539 | INFO     | traces error code: 0
[2026-01-10 09:04:38] 2026-01-10 14:04:21,540 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 09:04:38] 2026-01-10 14:04:36,614 | INFO     | PID=201141 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 09:04:38] 2026-01-10 14:04:36,621 | INFO     | .. there are 19 such processes running
[2026-01-10 09:04:38] 2026-01-10 14:04:36,621 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 09:04:38] 2026-01-10 14:04:36,621 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 09:04:38] 2026-01-10 14:04:36,621 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 09:04:38] 2026-01-10 14:04:36,621 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 09:04:38] 2026-01-10 14:04:36,622 | CRITICAL | thread 'MainThread' is not alive
[2026-01-10 09:04:38] 2026-01-10 14:04:36,622 | INFO     | [monitor] control thread has ended
[2026-01-10 09:04:38] 2026-01-10 14:04:36,955 [wrapper] ==== pilot stdout END ====
[2026-01-10 09:04:38] 2026-01-10 14:04:36,974 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 09:04:38] 2026-01-10 14:04:37,011 [wrapper] pilotpid: 201141
[2026-01-10 09:04:38] 2026-01-10 14:04:37,060 [wrapper] Pilot exit status: 0
[2026-01-10 09:04:38] 2026-01-10 14:04:37,181 [wrapper] pandaids: 6963199517
[2026-01-10 09:04:38] 2026-01-10 14:04:37,331 [wrapper] cleanup supervisor_pilot 2294281 201142
[2026-01-10 09:04:38] 2026-01-10 14:04:37,343 [wrapper] Test setup, not cleaning
[2026-01-10 09:04:38] 2026-01-10 14:04:37,389 [wrapper] apfmon messages muted
[2026-01-10 09:04:38] 2026-01-10 14:04:37,413 [wrapper] ==== wrapper stdout END ====
[2026-01-10 09:04:38] 2026-01-10 14:04:37,437 [wrapper] ==== wrapper stderr END ====
[2026-01-10 09:04:38]  *** Error codes and diagnostics ***
[2026-01-10 09:04:38]     "exeErrorCode": 0,
[2026-01-10 09:04:38]     "exeErrorDiag": "",
[2026-01-10 09:04:38]     "pilotErrorCode": 0,
[2026-01-10 09:04:38]     "pilotErrorDiag": "",
[2026-01-10 09:04:38]  *** Listing of results directory ***
[2026-01-10 09:04:38] total 783464
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 02:13 pilot3.tar.gz
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 02:13 queuedata.json
[2026-01-10 09:04:38] -rwx------. 1 boincer umatlas     36322 Jan  9 02:14 runpilot2-wrapper.sh
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas       100 Jan  9 22:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 09:04:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 22:12 run_atlas
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas       105 Jan  9 22:12 job.xml
[2026-01-10 09:04:38] -rw-r--r--. 2 boincer umatlas 392040655 Jan  9 22:12 EVNT.47962006._000072.pool.root.1
[2026-01-10 09:04:38] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 22:12 start_atlas.sh
[2026-01-10 09:04:38] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 22:12 shared
[2026-01-10 09:04:38] -rw-r--r--. 2 boincer umatlas    592610 Jan  9 22:12 input.tar.gz
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas         0 Jan  9 22:12 boinc_lockfile
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas      2888 Jan  9 22:12 pandaJob.out
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas        57 Jan  9 22:13 setup.sh.local
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas    989382 Jan  9 22:14 agis_schedconf.cvmfs.json
[2026-01-10 09:04:38] drwx------. 5 boincer umatlas      4096 Jan  9 22:14 pilot3
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas       533 Jan 10 08:42 boinc_task_state.xml
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas      6878 Jan 10 09:01 init_data.xml
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas 392907897 Jan 10 09:02 HITS.47962010._000921.pool.root.1
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas      1052 Jan 10 09:03 memory_monitor_summary.json
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas   1516240 Jan 10 09:03 agis_ddmendpoints.agis.ALL.json
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas   1839205 Jan 10 09:03 log.47962010._000921.job.log.tgz.1
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas        95 Jan 10 09:03 pilot_heartbeat.json
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas      8607 Jan 10 09:03 heartbeat.json
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas       892 Jan 10 09:04 pilotlog.txt
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 09:04 boinc_mmap_file
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas        29 Jan 10 09:04 wrapper_checkpoint.txt
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas   4861511 Jan 10 09:04 log.47962010._000921.job.log.1
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas       353 Jan 10 09:04 output.list
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas       620 Jan 10 09:04 runtime_log
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas   6717440 Jan 10 09:04 result.tar.gz
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas      9348 Jan 10 09:04 runtime_log.err
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas       661 Jan 10 09:04 2MBMDmFsLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8FhKDmpAFy1m.diag
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas     21177 Jan 10 09:04 stderr.txt
[2026-01-10 09:04:38] HITS file was successfully produced:
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas 392907897 Jan 10 09:02 shared/HITS.pool.root.1
[2026-01-10 09:04:38]  *** Contents of shared directory: ***
[2026-01-10 09:04:38] total 773720
[2026-01-10 09:04:38] -rw-r--r--. 2 boincer umatlas 392040655 Jan  9 22:12 ATLAS.root_0
[2026-01-10 09:04:38] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 22:12 start_atlas.sh
[2026-01-10 09:04:38] -rw-r--r--. 2 boincer umatlas    592610 Jan  9 22:12 input.tar.gz
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas 392907897 Jan 10 09:02 HITS.pool.root.1
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas   6717440 Jan 10 09:04 result.tar.gz
09:05:00 (194313): run_atlas exited; CPU time 140146.570511
09:05:00 (194313): called boinc_finish(0)

</stderr_txt>
]]>

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