Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:16:04 (20717): wrapper (7.7.26015): starting
03:16:04 (20717): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 03:16:04] Arguments: --nthreads 8
[2026-01-10 03:16:04] Threads: 8
[2026-01-10 03:16:04] Checking for CVMFS
[2026-01-10 03:16:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 03:16:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 03:16:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 03:16:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 03:16:06] 2.11.0.0 4374 129687 66184 154963 0 90 2836949 4096001 1911 130560 3 3077453 99.271 5543219 387 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-10 03:16:06] CVMFS is ok
[2026-01-10 03:16:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 03:16:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 03:16:06] Further information can be found at the LHC@home message board.
[2026-01-10 03:16:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 03:16:06] Checking for apptainer binary...
[2026-01-10 03:16:06] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-10 03:16:06] apptainer is not installed, using version from CVMFS
[2026-01-10 03:16:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 03:16:06] WARNING: Environment variable TMPDIR already has value [/tmp/job_11011031/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node281
[2026-01-10 03:16:06] apptainer works
[2026-01-10 03:16:07] Set ATHENA_PROC_NUMBER=8
[2026-01-10 03:16:07] Set ATHENA_CORE_NUMBER=8
[2026-01-10 03:16:07] Starting ATLAS job with PandaID=6961933639
[2026-01-10 03:16:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11011031/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 04:22:22]  *** The last 200 lines of the pilot log: ***
[2026-01-10 04:22:22]  surl=/tmp/job_11011031/atlas/pilot/slots/0/PanDA_Pilot-6961933639/log.47898826._007245.job.log.tgz.1
[2026-01-10 04:22:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0b/f7/log.47898826._007245.job.log.tgz.1
[2026-01-10 04:22:22]  workdir=None
[2026-01-10 04:22:22] ]
[2026-01-10 04:22:22] 2026-01-10 03:21:34,200 | INFO     | transferring file log.47898826._007245.job.log.tgz.1 from /tmp/job_11011031/atlas/pilot/slots/0/PanDA_Pilot-6961933639/log.47898826._007245.job.log.tgz.1 to /tmp/j
[2026-01-10 04:22:22] 2026-01-10 03:21:34,200 | INFO     | executing command: /usr/bin/env mv /tmp/job_11011031/atlas/pilot/slots/0/PanDA_Pilot-6961933639/log.47898826._007245.job.log.tgz.1 /tmp/job_11011031/atlas/pilot/sl
[2026-01-10 04:22:22] 2026-01-10 03:21:34,208 | INFO     | adding to output.list: log.47898826._007245.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0b/f7/log.47898826._007245.job.log.tg
[2026-01-10 04:22:22] 2026-01-10 03:21:34,208 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 04:22:22] 2026-01-10 03:21:34,208 | INFO     | summary of transferred files:
[2026-01-10 04:22:22] 2026-01-10 03:21:34,208 | INFO     |  -- lfn=log.47898826._007245.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 04:22:22] 2026-01-10 03:21:34,208 | INFO     | stage-out finished correctly
[2026-01-10 04:22:22] 2026-01-10 03:21:35,194 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 04:22:22] 2026-01-10 03:21:35,241 | INFO     | job 6961933639 has state=finished
[2026-01-10 04:22:22] 2026-01-10 03:21:35,241 | INFO     | preparing for final server update for job 6961933639 in state='finished'
[2026-01-10 04:22:22] 2026-01-10 03:21:35,242 | INFO     | this job has now completed (state=finished)
[2026-01-10 04:22:22] 2026-01-10 03:21:35,242 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 04:22:22] 2026-01-10 03:21:35,242 | INFO     | log transfer has been attempted: DONE
[2026-01-10 04:22:22] 2026-01-10 03:21:35,242 | INFO     | job 6961933639 has finished - writing final server update
[2026-01-10 04:22:22] 2026-01-10 03:21:35,242 | INFO     | total number of processed events: 400 (read)
[2026-01-10 04:22:22] 2026-01-10 03:21:35,242 | INFO     | executing command: lscpu
[2026-01-10 04:22:22] 2026-01-10 03:21:35,272 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 04:22:22] 2026-01-10 03:21:35,392 | INFO     | time since job start (3924s) is within the limit (174528.0s)
[2026-01-10 04:22:22] 2026-01-10 03:21:36,524 | INFO     | PID=24580 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 04:22:22] 2026-01-10 03:21:36,524 | INFO     | .. there are 3 such processes running
[2026-01-10 04:22:22] 2026-01-10 03:21:36,726 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 04:22:22] 2026-01-10 03:21:36,730 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2614.193109375
[2026-01-10 04:22:22] 2026-01-10 03:21:36,735 | INFO     | using path: /tmp/job_11011031/atlas/pilot/slots/0/PanDA_Pilot-6961933639/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 04:22:22] 2026-01-10 03:21:36,735 | INFO     | extracted standard info from prmon json
[2026-01-10 04:22:22] 2026-01-10 03:21:36,736 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 04:22:22] 2026-01-10 03:21:36,736 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 04:22:22] 2026-01-10 03:21:36,736 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 04:22:22] 2026-01-10 03:21:36,736 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 04:22:22] 2026-01-10 03:21:36,736 | INFO     | fitting pss+swap vs Time
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | sum of square deviations: 57407588.0
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | sum of deviations: -5083871943.0
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | mean x: 1768013401.0
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | mean y: 2872603.964912281
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | intersect: 156573702999.97296
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | chi2: 0.09433602830821268
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | current memory leak: -88.56 B/s (using 57 data points, chi2=0.09)
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | could have reported an average CPU frequency of 2653 MHz (6 samples)
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | ..............................
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | . Timing measurements:
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | . get job = 0 s
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | . initial setup = 1 s
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | . payload setup = 2 s
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | . stage-in = 0 s
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | . payload execution = 3904 s
[2026-01-10 04:22:22] 2026-01-10 03:21:36,737 | INFO     | . stage-out = 0 s
[2026-01-10 04:22:22] 2026-01-10 03:21:36,738 | INFO     | . log creation = 0 s
[2026-01-10 04:22:22] 2026-01-10 03:21:36,738 | INFO     | ..............................
[2026-01-10 04:22:22] 2026-01-10 03:21:36,785 | INFO     | 
[2026-01-10 04:22:22] 2026-01-10 03:21:36,785 | INFO     | job summary report
[2026-01-10 04:22:22] 2026-01-10 03:21:36,785 | INFO     | --------------------------------------------------
[2026-01-10 04:22:22] 2026-01-10 03:21:36,785 | INFO     | PanDA job id: 6961933639
[2026-01-10 04:22:22] 2026-01-10 03:21:36,785 | INFO     | task id: 47898826
[2026-01-10 04:22:22] 2026-01-10 03:21:36,785 | INFO     | errors: (none)
[2026-01-10 04:22:22] 2026-01-10 03:21:36,785 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | pilot state: finished 
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | transexitcode: 0
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | exeerrorcode: 0
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | exeerrordiag: 
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | exitcode: 0
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | exitmsg: OK
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | cpuconsumptiontime: 28507 s
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | nevents: 400
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | neventsw: 0
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | pid: 31650
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | pgrp: 31650
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | corecount: 8
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | event service: False
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | sizes: {0: 2284040, 2: 2284302, 11: 2284330, 3910: 2310279, 3911: 2319307, 3912: 2319363, 3913: 2319685}
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | --------------------------------------------------
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | 
[2026-01-10 04:22:22] 2026-01-10 03:21:36,786 | INFO     | executing command: ls -lF /tmp/job_11011031/atlas/pilot/slots/0
[2026-01-10 04:22:22] 2026-01-10 03:21:36,794 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,794 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,794 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,794 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,794 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,794 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,794 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,794 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,794 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,794 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,795 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,795 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,795 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,795 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,795 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,795 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,795 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,795 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 04:22:22] 2026-01-10 03:21:36,795 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,795 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 04:22:22] 2026-01-10 03:21:36,795 | INFO     | job 6961933639 has completed (purged errors)
[2026-01-10 04:22:22] 2026-01-10 03:21:36,795 | INFO     | overall cleanup function is called
[2026-01-10 04:22:22] 2026-01-10 03:21:37,801 | INFO     | --- collectZombieJob: --- 10, [31650]
[2026-01-10 04:22:22] 2026-01-10 03:21:37,801 | INFO     | zombie collector waiting for pid 31650
[2026-01-10 04:22:22] 2026-01-10 03:21:37,801 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 04:22:22] 2026-01-10 03:21:37,801 | INFO     | collected zombie processes
[2026-01-10 04:22:22] 2026-01-10 03:21:37,801 | INFO     | will attempt to kill all subprocesses of pid=31650
[2026-01-10 04:22:22] 2026-01-10 03:21:37,897 | INFO     | process IDs to be killed: [31650] (in reverse order)
[2026-01-10 04:22:22] 2026-01-10 03:21:37,929 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 04:22:22] 2026-01-10 03:21:37,929 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 04:22:22] 2026-01-10 03:21:37,933 | INFO     | did not find any defunct processes belonging to 31650
[2026-01-10 04:22:22] 2026-01-10 03:21:37,936 | INFO     | did not find any defunct processes belonging to 31650
[2026-01-10 04:22:22] 2026-01-10 03:21:37,936 | INFO     | ready for new job
[2026-01-10 04:22:22] 2026-01-10 03:21:37,936 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 04:22:22] 2026-01-10 03:21:37,937 | INFO     | ***************************************
[2026-01-10 04:22:22] 2026-01-10 03:21:37,937 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 04:22:22] 2026-01-10 03:21:37,937 | INFO     | ***************************************
[2026-01-10 04:22:22] 2026-01-10 03:21:37,937 | INFO     | 
[2026-01-10 04:22:22] 2026-01-10 03:21:37,950 | INFO     | architecture information:
[2026-01-10 04:22:22] 2026-01-10 03:21:37,950 | INFO     | executing command: cat /etc/os-release
[2026-01-10 04:22:22] 2026-01-10 03:21:37,956 | INFO     | cat /etc/os-release:
[2026-01-10 04:22:22] NAME="CentOS Linux"
[2026-01-10 04:22:22] VERSION="7 (Core)"
[2026-01-10 04:22:22] ID="centos"
[2026-01-10 04:22:22] ID_LIKE="rhel fedora"
[2026-01-10 04:22:22] VERSION_ID="7"
[2026-01-10 04:22:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 04:22:22] ANSI_COLOR="0;31"
[2026-01-10 04:22:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 04:22:22] HOME_URL="https://www.centos.org/"
[2026-01-10 04:22:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 04:22:22] 
[2026-01-10 04:22:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 04:22:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 04:22:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 04:22:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 04:22:22] 
[2026-01-10 04:22:22] 2026-01-10 03:21:37,956 | INFO     | ***************************************
[2026-01-10 04:22:22] 2026-01-10 03:21:38,459 | INFO     | executing command: df -mP /tmp/job_11011031/atlas/pilot/slots/0
[2026-01-10 04:22:22] 2026-01-10 03:21:38,464 | INFO     | sufficient remaining disk space (225098858496 B)
[2026-01-10 04:22:22] 2026-01-10 03:21:38,464 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 04:22:22] 2026-01-10 03:21:38,465 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 04:22:22] 2026-01-10 03:21:38,465 | INFO     | update_server=False
[2026-01-10 04:22:22] 2026-01-10 03:21:38,465 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 04:22:22] 2026-01-10 03:21:38,465 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:22:22] 2026-01-10 03:21:38,612 | WARNING  | process 31650 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 04:22:22] 2026-01-10 03:21:38,690 | INFO     | using path: /tmp/job_11011031/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 04:22:22] 2026-01-10 03:21:38,690 | INFO     | using path: /tmp/job_11011031/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 04:22:22] 2026-01-10 03:21:38,690 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-10 04:22:22] 2026-01-10 03:21:38,691 | WARNING  | maxPSS not found in memory monitor output
[2026-01-10 04:22:22] 2026-01-10 03:21:38,691 | INFO     | skipping file size check of payload stdout file (/tmp/job_11011031/atlas/pilot/slots/0/PanDA_Pilot-6961933639/payload.stdout) since it has not been created yet
[2026-01-10 04:22:22] 2026-01-10 03:21:38,691 | INFO     | executing command: df -mP /tmp/job_11011031/atlas/pilot/slots/0
[2026-01-10 04:22:22] 2026-01-10 03:21:38,697 | INFO     | sufficient remaining disk space (225098858496 B)
[2026-01-10 04:22:22] 2026-01-10 03:21:38,698 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-10 04:22:22] 2026-01-10 03:21:38,698 | INFO     | output file size check: skipping output file /tmp/job_11011031/atlas/pilot/slots/0/PanDA_Pilot-6961933639/HITS.47898826._007245.pool.root.1 since it does not exist
[2026-01-10 04:22:22] 2026-01-10 03:21:38,793 | INFO     | number of running child processes to parent process 31650: 1
[2026-01-10 04:22:22] 2026-01-10 03:21:38,793 | INFO     | maximum number of monitored processes: 6
[2026-01-10 04:22:22] 2026-01-10 03:21:38,793 | INFO     | aborting job monitoring since job object (job id=6961933639) has expired
[2026-01-10 04:22:22] 2026-01-10 03:21:38,793 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:22:22] 2026-01-10 03:21:38,793 | INFO     | will abort loop
[2026-01-10 04:22:22] 2026-01-10 03:21:39,069 | INFO     | all job control threads have been joined
[2026-01-10 04:22:22] 2026-01-10 03:21:39,373 | INFO     | all data control threads have been joined
[2026-01-10 04:22:22] 2026-01-10 03:21:39,470 | INFO     | [job] retrieve thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:21:39,470 | INFO     | [job] queue monitor thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:21:39,496 | INFO     | all payload control threads have been joined
[2026-01-10 04:22:22] 2026-01-10 03:21:39,628 | INFO     | [payload] validate_post thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:21:39,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 04:22:22] 2026-01-10 03:21:39,798 | INFO     | [job] job monitor thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:21:40,062 | INFO     | [job] validate thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:21:40,074 | INFO     | [job] control thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:21:40,378 | INFO     | [data] control thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:21:40,501 | INFO     | [payload] control thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:21:40,600 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:21:40,717 | INFO     | [payload] failed_post thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:21:40,738 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:21:40,739 | INFO     | [data] copytool_in thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:21:40,785 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:21:41,250 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 04:22:22] 2026-01-10 03:21:41,770 | INFO     | [data] copytool_out thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:21:45,255 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:21:49,017 | INFO     | job.realtimelogging is not enabled
[2026-01-10 04:22:22] 2026-01-10 03:21:50,022 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 04:22:22] 2026-01-10 03:22:08,713 | INFO     | PID=24580 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 04:22:22] 2026-01-10 03:22:08,713 | INFO     | .. there are 3 such processes running
[2026-01-10 04:22:22] 2026-01-10 03:22:08,713 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 04:22:22] 2026-01-10 03:22:08,713 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 04:22:22] 2026-01-10 03:22:08,713 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 04:22:22] 2026-01-10 03:22:17,164 | INFO     | [monitor] cgroup control has ended
[2026-01-10 04:22:22] 2026-01-10 03:22:17,237 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2026-01-10 04:22:22] 2026-01-10 03:22:17,759 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 04:22:22] 2026-01-10 03:22:17,759 | INFO     | [monitor] control thread has ended
[2026-01-10 04:22:22] 2026-01-10 03:22:22,262 | INFO     | all workflow threads have been joined
[2026-01-10 04:22:22] 2026-01-10 03:22:22,263 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 04:22:22] 2026-01-10 03:22:22,263 | INFO     | traces error code: 0
[2026-01-10 04:22:22] 2026-01-10 03:22:22,263 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 04:22:22] 2026-01-10 03:22:22,314 [wrapper] ==== pilot stdout END ====
[2026-01-10 04:22:22] 2026-01-10 03:22:22,315 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 04:22:22] 2026-01-10 03:22:22,316 [wrapper] pilotpid: 24580
[2026-01-10 04:22:22] 2026-01-10 03:22:22,317 [wrapper] Pilot exit status: 0
[2026-01-10 04:22:22] 2026-01-10 03:22:22,321 [wrapper] pandaids: 6961933639
[2026-01-10 04:22:22] 2026-01-10 03:22:22,341 [wrapper] cleanup supervisor_pilot 26950 24581
[2026-01-10 04:22:22] 2026-01-10 03:22:22,343 [wrapper] Test setup, not cleaning
[2026-01-10 04:22:22] 2026-01-10 03:22:22,344 [wrapper] apfmon messages muted
[2026-01-10 04:22:22] 2026-01-10 03:22:22,344 [wrapper] ==== wrapper stdout END ====
[2026-01-10 04:22:22] 2026-01-10 03:22:22,345 [wrapper] ==== wrapper stderr END ====
[2026-01-10 04:22:22]  *** Error codes and diagnostics ***
[2026-01-10 04:22:22]     "exeErrorCode": 0,
[2026-01-10 04:22:22]     "exeErrorDiag": "",
[2026-01-10 04:22:22]     "pilotErrorCode": 0,
[2026-01-10 04:22:22]     "pilotErrorDiag": "",
[2026-01-10 04:22:22]  *** Listing of results directory ***
[2026-01-10 04:22:22] total 449744
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user    579449 Jan  7 14:00 pilot3.tar.gz
[2026-01-10 04:22:22] -rwx------ 1 mf493845 unix-user     36322 Jan  7 14:04 runpilot2-wrapper.sh
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user      5112 Jan  7 14:05 queuedata.json
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user       100 Jan 10 02:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 04:22:22] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 10 02:18 run_atlas
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user       105 Jan 10 02:18 job.xml
[2026-01-10 04:22:22] -rw-r--r-- 2 mf493845 unix-user 226277435 Jan 10 03:16 EVNT.47898824._000113.pool.root.1
[2026-01-10 04:22:22] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 03:16 start_atlas.sh
[2026-01-10 04:22:22] drwxrwx--x 2 mf493845 unix-user       100 Jan 10 03:16 shared
[2026-01-10 04:22:22] -rw-r--r-- 2 mf493845 unix-user    592399 Jan 10 03:16 input.tar.gz
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user      6390 Jan 10 03:16 init_data.xml
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user         0 Jan 10 03:16 boinc_setup_complete
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user      8192 Jan 10 03:16 boinc_mmap_file
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user         0 Jan 10 03:16 boinc_lockfile
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user      2516 Jan 10 03:16 pandaJob.out
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user    989382 Jan 10 03:16 agis_schedconf.cvmfs.json
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user   1516240 Jan 10 03:16 agis_ddmendpoints.agis.ALL.json
[2026-01-10 04:22:22] drwx------ 5 mf493845 unix-user       440 Jan 10 03:16 pilot3
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user 228545909 Jan 10 04:21 HITS.47898826._007245.pool.root.1
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user      1014 Jan 10 04:21 memory_monitor_summary.json
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user    313996 Jan 10 04:21 log.47898826._007245.job.log.tgz.1
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user      7767 Jan 10 04:21 heartbeat.json
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user        95 Jan 10 04:22 pilot_heartbeat.json
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user      6464 Jan 10 04:22 pilotlog.txt
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user    602036 Jan 10 04:22 log.47898826._007245.job.log.1
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user       357 Jan 10 04:22 output.list
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user       620 Jan 10 04:22 runtime_log
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user    931840 Jan 10 04:22 result.tar.gz
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user      9220 Jan 10 04:22 runtime_log.err
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user       644 Jan 10 04:22 qxvMDmROix8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGzcKDmQPlden.diag
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user     23069 Jan 10 04:22 stderr.txt
[2026-01-10 04:22:22] HITS file was successfully produced:
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user 228545909 Jan 10 04:21 shared/HITS.pool.root.1
[2026-01-10 04:22:22]  *** Contents of shared directory: ***
[2026-01-10 04:22:22] total 445676
[2026-01-10 04:22:22] -rw-r--r-- 2 mf493845 unix-user 226277435 Jan 10 03:16 ATLAS.root_0
[2026-01-10 04:22:22] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 03:16 start_atlas.sh
[2026-01-10 04:22:22] -rw-r--r-- 2 mf493845 unix-user    592399 Jan 10 03:16 input.tar.gz
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user 228545909 Jan 10 04:21 HITS.pool.root.1
[2026-01-10 04:22:22] -rw------- 1 mf493845 unix-user    931840 Jan 10 04:22 result.tar.gz
04:22:23 (20717): run_atlas exited; CPU time 28556.209226
04:22:23 (20717): called boinc_finish(0)

</stderr_txt>
]]>

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