Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:06:01 (10136): wrapper (7.7.26015): starting
03:06:01 (10136): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 03:06:01] Arguments: --nthreads 8
[2026-01-10 03:06:01] Threads: 8
[2026-01-10 03:06:01] Checking for CVMFS
[2026-01-10 03:06:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 03:06:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 03:06:02] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 03:06:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 03:06:03] 2.11.0.0 4268 129491 89216 154963 2 56 2282218 4096000 943 130560 2 7905863 99.422 7805218 495 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-10 03:06:03] CVMFS is ok
[2026-01-10 03:06:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 03:06:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 03:06:03] Further information can be found at the LHC@home message board.
[2026-01-10 03:06:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 03:06:03] Checking for apptainer binary...
[2026-01-10 03:06:03] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-10 03:06:03] apptainer is not installed, using version from CVMFS
[2026-01-10 03:06:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 03:06:03] WARNING: Environment variable TMPDIR already has value [/tmp/job_11010987/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node064
[2026-01-10 03:06:03] apptainer works
[2026-01-10 03:06:03] Set ATHENA_PROC_NUMBER=8
[2026-01-10 03:06:03] Set ATHENA_CORE_NUMBER=8
[2026-01-10 03:06:03] Starting ATLAS job with PandaID=6962018122
[2026-01-10 03:06:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11010987/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 04:10:20]  *** The last 200 lines of the pilot log: ***
[2026-01-10 04:10:20]  protocol_id=None
[2026-01-10 04:10:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 04:10:20]  replicas=None
[2026-01-10 04:10:20]  scope=mc23_13p6TeV
[2026-01-10 04:10:20]  status=None
[2026-01-10 04:10:20]  status_code=0
[2026-01-10 04:10:20]  storage_token=
[2026-01-10 04:10:20]  surl=/tmp/job_11010987/atlas/pilot/slots/0/PanDA_Pilot-6962018122/log.47898826._010239.job.log.tgz.1
[2026-01-10 04:10:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ac/fb/log.47898826._010239.job.log.tgz.1
[2026-01-10 04:10:20]  workdir=None
[2026-01-10 04:10:20] ]
[2026-01-10 04:10:20] 2026-01-10 03:09:16,701 | INFO     | transferring file log.47898826._010239.job.log.tgz.1 from /tmp/job_11010987/atlas/pilot/slots/0/PanDA_Pilot-6962018122/log.47898826._010239.job.log.tgz.1 to /tmp/j
[2026-01-10 04:10:20] 2026-01-10 03:09:16,701 | INFO     | executing command: /usr/bin/env mv /tmp/job_11010987/atlas/pilot/slots/0/PanDA_Pilot-6962018122/log.47898826._010239.job.log.tgz.1 /tmp/job_11010987/atlas/pilot/sl
[2026-01-10 04:10:20] 2026-01-10 03:09:16,709 | INFO     | adding to output.list: log.47898826._010239.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ac/fb/log.47898826._010239.job.log.tg
[2026-01-10 04:10:20] 2026-01-10 03:09:16,710 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 04:10:20] 2026-01-10 03:09:16,710 | INFO     | summary of transferred files:
[2026-01-10 04:10:20] 2026-01-10 03:09:16,710 | INFO     |  -- lfn=log.47898826._010239.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 04:10:20] 2026-01-10 03:09:16,710 | INFO     | stage-out finished correctly
[2026-01-10 04:10:20] 2026-01-10 03:09:17,135 | INFO     | time since job start (3789s) is within the limit (174528.0s)
[2026-01-10 04:10:20] 2026-01-10 03:09:17,364 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 04:10:20] 2026-01-10 03:09:18,276 | INFO     | monitor loop #285: job 0:6962018122 is in state 'finished'
[2026-01-10 04:10:20] 2026-01-10 03:09:18,276 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 04:10:20] 2026-01-10 03:09:19,139 | INFO     | time since job start (3791s) is within the limit (174528.0s)
[2026-01-10 04:10:20] 2026-01-10 03:09:20,127 | INFO     | job 6962018122 has state=finished
[2026-01-10 04:10:20] 2026-01-10 03:09:20,127 | INFO     | preparing for final server update for job 6962018122 in state='finished'
[2026-01-10 04:10:20] 2026-01-10 03:09:20,127 | INFO     | this job has now completed (state=finished)
[2026-01-10 04:10:20] 2026-01-10 03:09:20,127 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 04:10:20] 2026-01-10 03:09:20,127 | INFO     | log transfer has been attempted: DONE
[2026-01-10 04:10:20] 2026-01-10 03:09:20,127 | INFO     | job 6962018122 has finished - writing final server update
[2026-01-10 04:10:20] 2026-01-10 03:09:20,127 | INFO     | total number of processed events: 400 (read)
[2026-01-10 04:10:20] 2026-01-10 03:09:20,127 | INFO     | executing command: lscpu
[2026-01-10 04:10:20] 2026-01-10 03:09:20,157 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 04:10:20] 2026-01-10 03:09:20,276 | INFO     | PID=14130 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 04:10:20] 2026-01-10 03:09:20,276 | INFO     | .. there are 4 such processes running
[2026-01-10 04:10:20] 2026-01-10 03:09:20,778 | INFO     | monitor loop #286: job 0:6962018122 is in state 'finished'
[2026-01-10 04:10:20] 2026-01-10 03:09:20,779 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 04:10:20] 2026-01-10 03:09:21,276 | INFO     | time since job start (3793s) is within the limit (174528.0s)
[2026-01-10 04:10:20] 2026-01-10 03:09:21,870 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 04:10:20] 2026-01-10 03:09:21,874 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2627.6496406250003
[2026-01-10 04:10:20] 2026-01-10 03:09:21,879 | INFO     | using path: /tmp/job_11010987/atlas/pilot/slots/0/PanDA_Pilot-6962018122/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 04:10:20] 2026-01-10 03:09:21,879 | INFO     | extracted standard info from prmon json
[2026-01-10 04:10:20] 2026-01-10 03:09:21,879 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 04:10:20] 2026-01-10 03:09:21,879 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 04:10:20] 2026-01-10 03:09:21,880 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 04:10:20] 2026-01-10 03:09:21,880 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 04:10:20] 2026-01-10 03:09:21,880 | INFO     | fitting pss+swap vs Time
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | sum of square deviations: 51573060.0
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | sum of deviations: 119465754.99999999
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | mean x: 1768012744.0
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | mean y: 2521518.4
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | intersect: -4092968982.097386
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | chi2: 0.003961428957548054
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | current memory leak: 2.32 B/s (using 55 data points, chi2=0.00)
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | could have reported an average CPU frequency of 2656 MHz (6 samples)
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | ..............................
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | . Timing measurements:
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | . get job = 0 s
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | . initial setup = 1 s
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | . payload setup = 8 s
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | . stage-in = 0 s
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | . payload execution = 3763 s
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | . stage-out = 0 s
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | . log creation = 0 s
[2026-01-10 04:10:20] 2026-01-10 03:09:21,881 | INFO     | ..............................
[2026-01-10 04:10:20] 2026-01-10 03:09:21,930 | INFO     | 
[2026-01-10 04:10:20] 2026-01-10 03:09:21,930 | INFO     | job summary report
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | --------------------------------------------------
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | PanDA job id: 6962018122
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | task id: 47898826
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | errors: (none)
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | pilot state: finished 
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | transexitcode: 0
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | exeerrorcode: 0
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | exeerrordiag: 
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | exitcode: 0
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | exitmsg: OK
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | cpuconsumptiontime: 27091 s
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | nevents: 400
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | neventsw: 0
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | pid: 20745
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | pgrp: 20745
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | corecount: 8
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | event service: False
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | sizes: {0: 2283808, 1: 2284118, 3: 2284380, 11: 2284408, 3774: 2310210, 3775: 2319421, 3776: 2319421, 3780: 2319615}
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | --------------------------------------------------
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | 
[2026-01-10 04:10:20] 2026-01-10 03:09:21,931 | INFO     | executing command: ls -lF /tmp/job_11010987/atlas/pilot/slots/0
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,941 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 04:10:20] 2026-01-10 03:09:21,942 | INFO     | job 6962018122 has completed (purged errors)
[2026-01-10 04:10:20] 2026-01-10 03:09:21,942 | INFO     | overall cleanup function is called
[2026-01-10 04:10:20] 2026-01-10 03:09:22,947 | INFO     | --- collectZombieJob: --- 10, [20745]
[2026-01-10 04:10:20] 2026-01-10 03:09:22,948 | INFO     | zombie collector waiting for pid 20745
[2026-01-10 04:10:20] 2026-01-10 03:09:22,948 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 04:10:20] 2026-01-10 03:09:22,948 | INFO     | collected zombie processes
[2026-01-10 04:10:20] 2026-01-10 03:09:22,948 | INFO     | will attempt to kill all subprocesses of pid=20745
[2026-01-10 04:10:20] 2026-01-10 03:09:23,047 | INFO     | process IDs to be killed: [20745] (in reverse order)
[2026-01-10 04:10:20] 2026-01-10 03:09:23,082 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 04:10:20] 2026-01-10 03:09:23,083 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 04:10:20] 2026-01-10 03:09:23,088 | INFO     | did not find any defunct processes belonging to 20745
[2026-01-10 04:10:20] 2026-01-10 03:09:23,091 | INFO     | did not find any defunct processes belonging to 20745
[2026-01-10 04:10:20] 2026-01-10 03:09:23,091 | INFO     | ready for new job
[2026-01-10 04:10:20] 2026-01-10 03:09:23,091 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 04:10:20] 2026-01-10 03:09:23,092 | INFO     | ***************************************
[2026-01-10 04:10:20] 2026-01-10 03:09:23,092 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 04:10:20] 2026-01-10 03:09:23,092 | INFO     | ***************************************
[2026-01-10 04:10:20] 2026-01-10 03:09:23,092 | INFO     | 
[2026-01-10 04:10:20] 2026-01-10 03:09:23,106 | INFO     | architecture information:
[2026-01-10 04:10:20] 2026-01-10 03:09:23,106 | INFO     | executing command: cat /etc/os-release
[2026-01-10 04:10:20] 2026-01-10 03:09:23,112 | INFO     | cat /etc/os-release:
[2026-01-10 04:10:20] NAME="CentOS Linux"
[2026-01-10 04:10:20] VERSION="7 (Core)"
[2026-01-10 04:10:20] ID="centos"
[2026-01-10 04:10:20] ID_LIKE="rhel fedora"
[2026-01-10 04:10:20] VERSION_ID="7"
[2026-01-10 04:10:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 04:10:20] ANSI_COLOR="0;31"
[2026-01-10 04:10:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 04:10:20] HOME_URL="https://www.centos.org/"
[2026-01-10 04:10:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 04:10:20] 
[2026-01-10 04:10:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 04:10:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 04:10:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 04:10:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 04:10:20] 
[2026-01-10 04:10:20] 2026-01-10 03:09:23,112 | INFO     | ***************************************
[2026-01-10 04:10:20] 2026-01-10 03:09:23,614 | INFO     | executing command: df -mP /tmp/job_11010987/atlas/pilot/slots/0
[2026-01-10 04:10:20] 2026-01-10 03:09:23,620 | INFO     | sufficient remaining disk space (224966737920 B)
[2026-01-10 04:10:20] 2026-01-10 03:09:23,620 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 04:10:20] 2026-01-10 03:09:23,620 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 04:10:20] 2026-01-10 03:09:23,620 | INFO     | update_server=False
[2026-01-10 04:10:20] 2026-01-10 03:09:23,621 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 04:10:20] 2026-01-10 03:09:23,621 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:10:20] 2026-01-10 03:09:23,621 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 04:10:20] 2026-01-10 03:09:23,796 | INFO     | all payload control threads have been joined
[2026-01-10 04:10:20] 2026-01-10 03:09:24,209 | INFO     | all job control threads have been joined
[2026-01-10 04:10:20] 2026-01-10 03:09:24,286 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:10:20] 2026-01-10 03:09:24,287 | INFO     | aborting loop
[2026-01-10 04:10:20] 2026-01-10 03:09:24,577 | INFO     | all data control threads have been joined
[2026-01-10 04:10:20] 2026-01-10 03:09:24,626 | INFO     | [job] retrieve thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:24,626 | INFO     | [job] queue monitor thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:24,771 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 04:10:20] 2026-01-10 03:09:24,801 | INFO     | [payload] control thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:25,215 | INFO     | [job] control thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:25,249 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:25,292 | INFO     | [job] job monitor thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:25,345 | INFO     | [payload] validate_post thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:25,385 | INFO     | [job] validate thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:25,509 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:25,582 | INFO     | [data] control thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:25,939 | INFO     | [data] copytool_in thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:25,983 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:26,120 | INFO     | [payload] failed_post thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:26,776 | INFO     | [data] copytool_out thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:27,626 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:34,348 | INFO     | job.realtimelogging is not enabled
[2026-01-10 04:10:20] 2026-01-10 03:09:35,354 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 04:10:20] 2026-01-10 03:09:54,465 | INFO     | PID=14130 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 04:10:20] 2026-01-10 03:09:54,465 | INFO     | .. there are 4 such processes running
[2026-01-10 04:10:20] 2026-01-10 03:09:54,465 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 04:10:20] 2026-01-10 03:09:54,465 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 04:10:20] 2026-01-10 03:09:54,465 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 04:10:20] 2026-01-10 03:10:14,361 | INFO     | [monitor] cgroup control has ended
[2026-01-10 04:10:20] 2026-01-10 03:10:14,903 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2026-01-10 04:10:20] 2026-01-10 03:10:15,570 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 04:10:20] 2026-01-10 03:10:15,570 | INFO     | [monitor] control thread has ended
[2026-01-10 04:10:20] 2026-01-10 03:10:19,928 | INFO     | all workflow threads have been joined
[2026-01-10 04:10:20] 2026-01-10 03:10:19,929 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 04:10:20] 2026-01-10 03:10:19,929 | INFO     | traces error code: 0
[2026-01-10 04:10:20] 2026-01-10 03:10:19,929 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 04:10:20] 2026-01-10 03:10:19,981 [wrapper] ==== pilot stdout END ====
[2026-01-10 04:10:20] 2026-01-10 03:10:19,982 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 04:10:20] 2026-01-10 03:10:19,983 [wrapper] pilotpid: 14130
[2026-01-10 04:10:20] 2026-01-10 03:10:19,985 [wrapper] Pilot exit status: 0
[2026-01-10 04:10:20] 2026-01-10 03:10:19,989 [wrapper] pandaids: 6962018122
[2026-01-10 04:10:20] 2026-01-10 03:10:20,011 [wrapper] cleanup supervisor_pilot  7433 14131
[2026-01-10 04:10:20] 2026-01-10 03:10:20,013 [wrapper] Test setup, not cleaning
[2026-01-10 04:10:20] 2026-01-10 03:10:20,014 [wrapper] apfmon messages muted
[2026-01-10 04:10:20] 2026-01-10 03:10:20,015 [wrapper] ==== wrapper stdout END ====
[2026-01-10 04:10:20] 2026-01-10 03:10:20,016 [wrapper] ==== wrapper stderr END ====
[2026-01-10 04:10:20]  *** Error codes and diagnostics ***
[2026-01-10 04:10:20]     "exeErrorCode": 0,
[2026-01-10 04:10:20]     "exeErrorDiag": "",
[2026-01-10 04:10:20]     "pilotErrorCode": 0,
[2026-01-10 04:10:20]     "pilotErrorDiag": "",
[2026-01-10 04:10:20]  *** Listing of results directory ***
[2026-01-10 04:10:20] total 435084
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user    579449 Jan  7 16:25 pilot3.tar.gz
[2026-01-10 04:10:20] -rwx------ 1 mf493845 unix-user     36322 Jan  7 16:35 runpilot2-wrapper.sh
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user      5112 Jan  7 16:38 queuedata.json
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user       100 Jan 10 02:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 04:10:20] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 10 02:08 run_atlas
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user       105 Jan 10 02:08 job.xml
[2026-01-10 04:10:20] -rw-r--r-- 2 mf493845 unix-user 225459237 Jan 10 03:06 EVNT.47898824._000516.pool.root.1
[2026-01-10 04:10:20] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 03:06 start_atlas.sh
[2026-01-10 04:10:20] drwxrwx--x 2 mf493845 unix-user       100 Jan 10 03:06 shared
[2026-01-10 04:10:20] -rw-r--r-- 2 mf493845 unix-user    592397 Jan 10 03:06 input.tar.gz
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user      6390 Jan 10 03:06 init_data.xml
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user         0 Jan 10 03:06 boinc_setup_complete
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user      8192 Jan 10 03:06 boinc_mmap_file
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user         0 Jan 10 03:06 boinc_lockfile
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user      2516 Jan 10 03:06 pandaJob.out
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user    989382 Jan 10 03:06 agis_schedconf.cvmfs.json
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user   1516240 Jan 10 03:06 agis_ddmendpoints.agis.ALL.json
[2026-01-10 04:10:20] drwx------ 5 mf493845 unix-user       440 Jan 10 03:06 pilot3
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user 214355501 Jan 10 04:08 HITS.47898826._010239.pool.root.1
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user        95 Jan 10 04:09 pilot_heartbeat.json
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user      1031 Jan 10 04:09 memory_monitor_summary.json
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user    307667 Jan 10 04:09 log.47898826._010239.job.log.tgz.1
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user      7766 Jan 10 04:09 heartbeat.json
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user      4907 Jan 10 04:10 pilotlog.txt
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user    602905 Jan 10 04:10 log.47898826._010239.job.log.1
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user       357 Jan 10 04:10 output.list
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user       620 Jan 10 04:10 runtime_log
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user    931840 Jan 10 04:10 result.tar.gz
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user       644 Jan 10 04:10 zOOODmHkkx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAPiKDm6KlNhm.diag
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user      9220 Jan 10 04:10 runtime_log.err
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user     22371 Jan 10 04:10 stderr.txt
[2026-01-10 04:10:20] HITS file was successfully produced:
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user 214355501 Jan 10 04:08 shared/HITS.pool.root.1
[2026-01-10 04:10:20]  *** Contents of shared directory: ***
[2026-01-10 04:10:20] total 431016
[2026-01-10 04:10:20] -rw-r--r-- 2 mf493845 unix-user 225459237 Jan 10 03:06 ATLAS.root_0
[2026-01-10 04:10:20] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 03:06 start_atlas.sh
[2026-01-10 04:10:20] -rw-r--r-- 2 mf493845 unix-user    592397 Jan 10 03:06 input.tar.gz
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user 214355501 Jan 10 04:08 HITS.pool.root.1
[2026-01-10 04:10:20] -rw------- 1 mf493845 unix-user    931840 Jan 10 04:10 result.tar.gz
04:10:21 (10136): run_atlas exited; CPU time 27137.787287
04:10:21 (10136): called boinc_finish(0)

</stderr_txt>
]]>

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