Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
04:16:28 (21752): wrapper (7.7.26015): starting
04:16:28 (21752): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 04:16:28] Arguments: --nthreads 8
[2026-01-10 04:16:28] Threads: 8
[2026-01-10 04:16:28] Checking for CVMFS
[2026-01-10 04:16:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 04:16:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 04:16:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 04:16:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 04:16:28] 2.11.0.0 7913 130148 73860 154966 3 1 3968777 4096000 0 130560 3 3321944 99.189 6022244 412 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-10 04:16:28] CVMFS is ok
[2026-01-10 04:16:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 04:16:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 04:16:28] Further information can be found at the LHC@home message board.
[2026-01-10 04:16:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 04:16:28] Checking for apptainer binary...
[2026-01-10 04:16:28] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-10 04:16:28] apptainer is not installed, using version from CVMFS
[2026-01-10 04:16:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 04:16:29] WARNING: Environment variable TMPDIR already has value [/tmp/job_11010227/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node373
[2026-01-10 04:16:29] apptainer works
[2026-01-10 04:16:29] Set ATHENA_PROC_NUMBER=8
[2026-01-10 04:16:29] Set ATHENA_CORE_NUMBER=8
[2026-01-10 04:16:29] Starting ATLAS job with PandaID=6963378780
[2026-01-10 04:16:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11010227/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 08:56:07]  *** The last 200 lines of the pilot log: ***
[2026-01-10 08:56:07] 2026-01-10 07:55:15,013 | INFO     | log transfer has been attempted: DONE
[2026-01-10 08:56:07] 2026-01-10 07:55:15,013 | INFO     | job 6963378780 has finished - writing final server update
[2026-01-10 08:56:07] 2026-01-10 07:55:15,013 | INFO     | total number of processed events: 900 (read)
[2026-01-10 08:56:07] 2026-01-10 07:55:15,013 | INFO     | executing command: lscpu
[2026-01-10 08:56:07] 2026-01-10 07:55:15,045 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 08:56:07] 2026-01-10 07:55:15,984 | INFO     | monitor loop #1211: job 0:6963378780 is in state 'finished'
[2026-01-10 08:56:07] 2026-01-10 07:55:15,984 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 08:56:07] 2026-01-10 07:55:16,702 | INFO     | time since job start (16723s) is within the limit (349056.0s)
[2026-01-10 08:56:07] 2026-01-10 07:55:16,703 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 08:56:07] 2026-01-10 07:55:16,708 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2490.2412187500004
[2026-01-10 08:56:07] 2026-01-10 07:55:16,713 | INFO     | using path: /tmp/job_11010227/atlas/pilot/slots/0/PanDA_Pilot-6963378780/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 08:56:07] 2026-01-10 07:55:16,713 | INFO     | extracted standard info from prmon json
[2026-01-10 08:56:07] 2026-01-10 07:55:16,713 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 08:56:07] 2026-01-10 07:55:16,713 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 08:56:07] 2026-01-10 07:55:16,716 | INFO     | fitting pss+swap vs Time
[2026-01-10 08:56:07] 2026-01-10 07:55:16,716 | INFO     | sum of square deviations: 6378552750.485383
[2026-01-10 08:56:07] 2026-01-10 07:55:16,717 | INFO     | sum of deviations: 1895800037768.4788
[2026-01-10 08:56:07] 2026-01-10 07:55:16,717 | INFO     | mean x: 1768023338.5072992
[2026-01-10 08:56:07] 2026-01-10 07:55:16,717 | INFO     | mean y: 5647483.010948905
[2026-01-10 08:56:07] 2026-01-10 07:55:16,717 | INFO     | intersect: -525476988317.50507
[2026-01-10 08:56:07] 2026-01-10 07:55:16,717 | INFO     | chi2: 8.061674033766712
[2026-01-10 08:56:07] 2026-01-10 07:55:16,717 | INFO     | sum of square deviations: 6035691117.985139
[2026-01-10 08:56:07] 2026-01-10 07:55:16,718 | INFO     | sum of deviations: 2029618153447.4602
[2026-01-10 08:56:07] 2026-01-10 07:55:16,718 | INFO     | mean x: 1768023186.0074348
[2026-01-10 08:56:07] 2026-01-10 07:55:16,719 | INFO     | mean y: 5706689.769516729
[2026-01-10 08:56:07] 2026-01-10 07:55:16,719 | INFO     | intersect: -594526366587.4668
[2026-01-10 08:56:07] 2026-01-10 07:55:16,719 | INFO     | chi2: 4.383745612265631
[2026-01-10 08:56:07] 2026-01-10 07:55:16,719 | INFO     | current chi2=4.383745612265631 (change=45.622390660995464 %)
[2026-01-10 08:56:07] 2026-01-10 07:55:16,719 | INFO     | sum of square deviations: 5705341347.984858
[2026-01-10 08:56:07] 2026-01-10 07:55:16,720 | INFO     | sum of deviations: 1967708181991.1057
[2026-01-10 08:56:07] 2026-01-10 07:55:16,720 | INFO     | mean x: 1768023033.5075758
[2026-01-10 08:56:07] 2026-01-10 07:55:16,720 | INFO     | mean y: 5678106.946969697
[2026-01-10 08:56:07] 2026-01-10 07:55:16,720 | INFO     | intersect: -609765618085.588
[2026-01-10 08:56:07] 2026-01-10 07:55:16,720 | INFO     | chi2: 4.1092407984355415
[2026-01-10 08:56:07] 2026-01-10 07:55:16,720 | INFO     | current chi2=4.1092407984355415 (change=6.261878268256053 %)
[2026-01-10 08:56:07] 2026-01-10 07:55:16,720 | INFO     | right removable region: 263
[2026-01-10 08:56:07] 2026-01-10 07:55:16,721 | INFO     | sum of square deviations: 6035689897.985139
[2026-01-10 08:56:07] 2026-01-10 07:55:16,721 | INFO     | sum of deviations: 1735108754553.541
[2026-01-10 08:56:07] 2026-01-10 07:55:16,722 | INFO     | mean x: 1768023491.0074348
[2026-01-10 08:56:07] 2026-01-10 07:55:16,722 | INFO     | mean y: 5718788.728624536
[2026-01-10 08:56:07] 2026-01-10 07:55:16,722 | INFO     | intersect: -508256483105.9366
[2026-01-10 08:56:07] 2026-01-10 07:55:16,722 | INFO     | chi2: 6.856454338072335
[2026-01-10 08:56:07] 2026-01-10 07:55:16,722 | INFO     | current chi2=6.856454338072335 (change=14.949992900311477 %)
[2026-01-10 08:56:07] 2026-01-10 07:55:16,722 | INFO     | left removable region: 10
[2026-01-10 08:56:07] 2026-01-10 07:55:16,722 | INFO     | sum of square deviations: 5021496942.0
[2026-01-10 08:56:07] 2026-01-10 07:55:16,723 | INFO     | sum of deviations: 1682537545432.0
[2026-01-10 08:56:07] 2026-01-10 07:55:16,723 | INFO     | mean x: 1768023308.0
[2026-01-10 08:56:07] 2026-01-10 07:55:16,723 | INFO     | mean y: 5806107.059288537
[2026-01-10 08:56:07] 2026-01-10 07:55:16,723 | INFO     | intersect: -592400329208.4532
[2026-01-10 08:56:07] 2026-01-10 07:55:16,723 | INFO     | chi2: 2.871585123503566
[2026-01-10 08:56:07] 2026-01-10 07:55:16,723 | INFO     | current memory leak: 335.07 B/s (using 253 data points, chi2=2.87)
[2026-01-10 08:56:07] 2026-01-10 07:55:16,723 | INFO     | could have reported an average CPU frequency of 2540 MHz (12 samples)
[2026-01-10 08:56:07] 2026-01-10 07:55:16,723 | INFO     | ..............................
[2026-01-10 08:56:07] 2026-01-10 07:55:16,724 | INFO     | . Timing measurements:
[2026-01-10 08:56:07] 2026-01-10 07:55:16,724 | INFO     | . get job = 0 s
[2026-01-10 08:56:07] 2026-01-10 07:55:16,724 | INFO     | . initial setup = 1 s
[2026-01-10 08:56:07] 2026-01-10 07:55:16,724 | INFO     | . payload setup = 2 s
[2026-01-10 08:56:07] 2026-01-10 07:55:16,724 | INFO     | . stage-in = 0 s
[2026-01-10 08:56:07] 2026-01-10 07:55:16,724 | INFO     | . payload execution = 16698 s
[2026-01-10 08:56:07] 2026-01-10 07:55:16,724 | INFO     | . stage-out = 1 s
[2026-01-10 08:56:07] 2026-01-10 07:55:16,724 | INFO     | . log creation = 0 s
[2026-01-10 08:56:07] 2026-01-10 07:55:16,724 | INFO     | ..............................
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | 
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | job summary report
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | --------------------------------------------------
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | PanDA job id: 6963378780
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | task id: 47962010
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | errors: (none)
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | pilot state: finished 
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | transexitcode: 0
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | exeerrorcode: 0
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | exeerrordiag: 
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | exitcode: 0
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | exitmsg: OK
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | cpuconsumptiontime: 129167 s
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | nevents: 900
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | neventsw: 0
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | pid: 31959
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | pgrp: 31959
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | corecount: 8
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | event service: False
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | sizes: {0: 2284748, 2: 2285010, 10: 2285038, 16704: 2317975, 16705: 2317974, 16706: 2327054, 16707: 2327238, 16710: 2327484}
[2026-01-10 08:56:07] 2026-01-10 07:55:17,203 | INFO     | --------------------------------------------------
[2026-01-10 08:56:07] 2026-01-10 07:55:17,204 | INFO     | 
[2026-01-10 08:56:07] 2026-01-10 07:55:17,204 | INFO     | executing command: ls -lF /tmp/job_11010227/atlas/pilot/slots/0
[2026-01-10 08:56:07] 2026-01-10 07:55:17,212 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | job 6963378780 has completed (purged errors)
[2026-01-10 08:56:07] 2026-01-10 07:55:17,213 | INFO     | overall cleanup function is called
[2026-01-10 08:56:07] 2026-01-10 07:55:17,826 | INFO     | PID=25494 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 08:56:07] 2026-01-10 07:55:17,826 | INFO     | .. there are 2 such processes running
[2026-01-10 08:56:07] 2026-01-10 07:55:18,221 | INFO     | --- collectZombieJob: --- 10, [31959]
[2026-01-10 08:56:07] 2026-01-10 07:55:18,221 | INFO     | zombie collector waiting for pid 31959
[2026-01-10 08:56:07] 2026-01-10 07:55:18,221 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 08:56:07] 2026-01-10 07:55:18,221 | INFO     | collected zombie processes
[2026-01-10 08:56:07] 2026-01-10 07:55:18,221 | INFO     | will attempt to kill all subprocesses of pid=31959
[2026-01-10 08:56:07] 2026-01-10 07:55:18,311 | INFO     | process IDs to be killed: [31959] (in reverse order)
[2026-01-10 08:56:07] 2026-01-10 07:55:18,342 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 08:56:07] 2026-01-10 07:55:18,342 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 08:56:07] 2026-01-10 07:55:18,345 | INFO     | did not find any defunct processes belonging to 31959
[2026-01-10 08:56:07] 2026-01-10 07:55:18,348 | INFO     | did not find any defunct processes belonging to 31959
[2026-01-10 08:56:07] 2026-01-10 07:55:18,348 | INFO     | ready for new job
[2026-01-10 08:56:07] 2026-01-10 07:55:18,348 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 08:56:07] 2026-01-10 07:55:18,349 | INFO     | ***************************************
[2026-01-10 08:56:07] 2026-01-10 07:55:18,349 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 08:56:07] 2026-01-10 07:55:18,349 | INFO     | ***************************************
[2026-01-10 08:56:07] 2026-01-10 07:55:18,349 | INFO     | 
[2026-01-10 08:56:07] 2026-01-10 07:55:18,362 | INFO     | architecture information:
[2026-01-10 08:56:07] 2026-01-10 07:55:18,363 | INFO     | executing command: cat /etc/os-release
[2026-01-10 08:56:07] 2026-01-10 07:55:18,369 | INFO     | cat /etc/os-release:
[2026-01-10 08:56:07] NAME="CentOS Linux"
[2026-01-10 08:56:07] VERSION="7 (Core)"
[2026-01-10 08:56:07] ID="centos"
[2026-01-10 08:56:07] ID_LIKE="rhel fedora"
[2026-01-10 08:56:07] VERSION_ID="7"
[2026-01-10 08:56:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 08:56:07] ANSI_COLOR="0;31"
[2026-01-10 08:56:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 08:56:07] HOME_URL="https://www.centos.org/"
[2026-01-10 08:56:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 08:56:07] 
[2026-01-10 08:56:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 08:56:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 08:56:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 08:56:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 08:56:07] 
[2026-01-10 08:56:07] 2026-01-10 07:55:18,369 | INFO     | ***************************************
[2026-01-10 08:56:07] 2026-01-10 07:55:18,871 | INFO     | executing command: df -mP /tmp/job_11010227/atlas/pilot/slots/0
[2026-01-10 08:56:07] 2026-01-10 07:55:18,877 | INFO     | sufficient remaining disk space (224009388032 B)
[2026-01-10 08:56:07] 2026-01-10 07:55:18,877 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 08:56:07] 2026-01-10 07:55:18,877 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 08:56:07] 2026-01-10 07:55:18,877 | INFO     | update_server=False
[2026-01-10 08:56:07] 2026-01-10 07:55:18,877 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 08:56:07] 2026-01-10 07:55:18,877 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 08:56:07] 2026-01-10 07:55:19,149 | INFO     | all payload control threads have been joined
[2026-01-10 08:56:07] 2026-01-10 07:55:19,411 | INFO     | all data control threads have been joined
[2026-01-10 08:56:07] 2026-01-10 07:55:19,492 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 08:56:07] 2026-01-10 07:55:19,492 | INFO     | aborting loop
[2026-01-10 08:56:07] 2026-01-10 07:55:19,660 | INFO     | all job control threads have been joined
[2026-01-10 08:56:07] 2026-01-10 07:55:19,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 08:56:07] 2026-01-10 07:55:19,883 | INFO     | [job] retrieve thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:20,056 | INFO     | [job] validate thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:20,083 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:20,105 | INFO     | [payload] failed_post thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:20,144 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:20,154 | INFO     | [payload] control thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:20,411 | INFO     | [payload] validate_post thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:20,416 | INFO     | [data] control thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:20,497 | INFO     | [job] job monitor thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:20,666 | INFO     | [job] control thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:20,883 | INFO     | [data] copytool_out thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:20,986 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:21,140 | INFO     | [data] copytool_in thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:21,782 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 08:56:07] 2026-01-10 07:55:22,787 | INFO     | [job] queue monitor thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:23,736 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:29,128 | INFO     | job.realtimelogging is not enabled
[2026-01-10 08:56:07] 2026-01-10 07:55:30,133 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 08:56:07] 2026-01-10 07:55:50,001 | INFO     | PID=25494 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 08:56:07] 2026-01-10 07:55:50,001 | INFO     | .. there are 2 such processes running
[2026-01-10 08:56:07] 2026-01-10 07:55:50,002 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 08:56:07] 2026-01-10 07:55:50,002 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 08:56:07] 2026-01-10 07:55:50,002 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 08:56:07] 2026-01-10 07:56:01,480 | INFO     | [monitor] cgroup control has ended
[2026-01-10 08:56:07] 2026-01-10 07:56:02,511 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2026-01-10 08:56:07] 2026-01-10 07:56:03,067 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 08:56:07] 2026-01-10 07:56:03,067 | INFO     | [monitor] control thread has ended
[2026-01-10 08:56:07] 2026-01-10 07:56:07,536 | INFO     | all workflow threads have been joined
[2026-01-10 08:56:07] 2026-01-10 07:56:07,536 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 08:56:07] 2026-01-10 07:56:07,536 | INFO     | traces error code: 0
[2026-01-10 08:56:07] 2026-01-10 07:56:07,537 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 08:56:07] 2026-01-10 07:56:07,591 [wrapper] ==== pilot stdout END ====
[2026-01-10 08:56:07] 2026-01-10 07:56:07,592 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 08:56:07] 2026-01-10 07:56:07,594 [wrapper] pilotpid: 25494
[2026-01-10 08:56:07] 2026-01-10 07:56:07,595 [wrapper] Pilot exit status: 0
[2026-01-10 08:56:07] 2026-01-10 07:56:07,599 [wrapper] pandaids: 6963378780
[2026-01-10 08:56:07] 2026-01-10 07:56:07,621 [wrapper] cleanup supervisor_pilot 19509 25495
[2026-01-10 08:56:07] 2026-01-10 07:56:07,623 [wrapper] Test setup, not cleaning
[2026-01-10 08:56:07] 2026-01-10 07:56:07,624 [wrapper] apfmon messages muted
[2026-01-10 08:56:07] 2026-01-10 07:56:07,625 [wrapper] ==== wrapper stdout END ====
[2026-01-10 08:56:07] 2026-01-10 07:56:07,626 [wrapper] ==== wrapper stderr END ====
[2026-01-10 08:56:07]  *** Error codes and diagnostics ***
[2026-01-10 08:56:07]     "exeErrorCode": 0,
[2026-01-10 08:56:07]     "exeErrorDiag": "",
[2026-01-10 08:56:07]     "pilotErrorCode": 0,
[2026-01-10 08:56:07]     "pilotErrorDiag": "",
[2026-01-10 08:56:07]  *** Listing of results directory ***
[2026-01-10 08:56:07] total 1174288
[2026-01-10 08:56:07] -rwx------ 1 mf493845 unix-user     36322 Jan  9 08:17 runpilot2-wrapper.sh
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user    579449 Jan  9 08:20 pilot3.tar.gz
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user      5112 Jan  9 08:21 queuedata.json
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user       100 Jan 10 02:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 08:56:07] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 10 02:36 run_atlas
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user       105 Jan 10 02:36 job.xml
[2026-01-10 08:56:07] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 04:16 start_atlas.sh
[2026-01-10 08:56:07] drwxrwx--x 2 mf493845 unix-user       100 Jan 10 04:16 shared
[2026-01-10 08:56:07] -rw-r--r-- 2 mf493845 unix-user    592620 Jan 10 04:16 input.tar.gz
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user      6391 Jan 10 04:16 init_data.xml
[2026-01-10 08:56:07] -rw-r--r-- 2 mf493845 unix-user 392029916 Jan 10 04:16 EVNT.47962006._000102.pool.root.1
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user         0 Jan 10 04:16 boinc_setup_complete
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user      8192 Jan 10 04:16 boinc_mmap_file
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user         0 Jan 10 04:16 boinc_lockfile
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user      2892 Jan 10 04:16 pandaJob.out
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user    989374 Jan 10 04:16 agis_schedconf.cvmfs.json
[2026-01-10 08:56:07] drwx------ 5 mf493845 unix-user       440 Jan 10 04:16 pilot3
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user 798679836 Jan 10 08:54 HITS.47962010._001261.pool.root.1
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user      1026 Jan 10 08:55 memory_monitor_summary.json
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user   1516240 Jan 10 08:55 agis_ddmendpoints.agis.ALL.json
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user   1543396 Jan 10 08:55 log.47962010._001261.job.log.tgz.1
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user      8582 Jan 10 08:55 heartbeat.json
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user        95 Jan 10 08:55 pilot_heartbeat.json
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user      4907 Jan 10 08:56 pilotlog.txt
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user   2394263 Jan 10 08:56 log.47962010._001261.job.log.1
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user       353 Jan 10 08:56 output.list
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user       620 Jan 10 08:56 runtime_log
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user   3952640 Jan 10 08:56 result.tar.gz
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user       651 Jan 10 08:56 zG7NDmQvLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHQhKDmJEB8So.diag
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user      9221 Jan 10 08:56 runtime_log.err
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user     21930 Jan 10 08:56 stderr.txt
[2026-01-10 08:56:07] HITS file was successfully produced:
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user 798679836 Jan 10 08:54 shared/HITS.pool.root.1
[2026-01-10 08:56:07]  *** Contents of shared directory: ***
[2026-01-10 08:56:07] total 1167264
[2026-01-10 08:56:07] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 04:16 start_atlas.sh
[2026-01-10 08:56:07] -rw-r--r-- 2 mf493845 unix-user    592620 Jan 10 04:16 input.tar.gz
[2026-01-10 08:56:07] -rw-r--r-- 2 mf493845 unix-user 392029916 Jan 10 04:16 ATLAS.root_0
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user 798679836 Jan 10 08:54 HITS.pool.root.1
[2026-01-10 08:56:07] -rw------- 1 mf493845 unix-user   3952640 Jan 10 08:56 result.tar.gz
08:56:08 (21752): run_atlas exited; CPU time 129327.672553
08:56:08 (21752): called boinc_finish(0)

</stderr_txt>
]]>

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