Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:39:58 (3926630): wrapper (7.7.26015): starting
11:39:58 (3926630): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 11:39:58] Arguments: --nthreads 3
[2026-01-10 11:39:58] Threads: 3
[2026-01-10 11:39:58] Checking for CVMFS
[2026-01-10 11:39:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 11:39:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 11:39:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 11:39:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 11:39:58] 2.9.2.0 2993219 3706 87468 154976 0 81 22175823 36864000 0 130560 0 2437297 99.989 135973 4215 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-10 11:39:58] CVMFS is ok
[2026-01-10 11:39:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 11:39:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 11:39:58] Further information can be found at the LHC@home message board.
[2026-01-10 11:39:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 11:39:58] Checking for apptainer binary...
[2026-01-10 11:39:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 11:39:58] Running /usr/bin/apptainer --version
[2026-01-10 11:39:58] apptainer version 1.4.1-1.1
[2026-01-10 11:39:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 11:39:58] magicA161
[2026-01-10 11:39:58] apptainer works
[2026-01-10 11:39:58] Set ATHENA_PROC_NUMBER=3
[2026-01-10 11:39:58] Set ATHENA_CORE_NUMBER=3
[2026-01-10 11:39:58] Starting ATLAS job with PandaID=6962018501
[2026-01-10 11:39:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 13:33:18]  *** The last 200 lines of the pilot log: ***
[2026-01-10 13:33:18] 2026-01-10 12:32:56,668 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 13:33:18] 2026-01-10 12:32:56,668 | INFO     | update_server=False
[2026-01-10 13:33:18] 2026-01-10 12:32:56,668 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 13:33:18] 2026-01-10 12:32:56,669 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 13:33:18] 2026-01-10 12:32:56,669 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:33:18] 2026-01-10 12:32:56,669 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 13:33:18] 2026-01-10 12:32:56,669 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 13:33:18] 2026-01-10 12:32:56,669 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 13:33:18] 2026-01-10 12:32:56,898 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 13:33:18] 2026-01-10 12:32:56,898 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 13:33:18] 2026-01-10 12:32:56,898 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:33:18] 2026-01-10 12:32:56,898 | INFO     | will abort loop
[2026-01-10 13:33:18] 2026-01-10 12:32:57,050 | INFO     | all payload control threads have been joined
[2026-01-10 13:33:18] 2026-01-10 12:32:57,230 | INFO     | all job control threads have been joined
[2026-01-10 13:33:18] 2026-01-10 12:32:57,449 | INFO     | all data control threads have been joined
[2026-01-10 13:33:18] 2026-01-10 12:32:57,671 | INFO     | [job] queue monitor thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:32:57,671 | INFO     | [job] retrieve thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:32:57,904 | INFO     | [job] job monitor thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:32:58,055 | INFO     | [payload] control thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:32:58,061 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 13:33:18] 2026-01-10 12:32:58,146 | INFO     | [data] copytool_in thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:32:58,236 | INFO     | [job] control thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:32:58,236 | INFO     | [payload] validate_post thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:32:58,454 | INFO     | [data] control thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:32:58,721 | INFO     | [job] validate thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:32:58,776 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:32:58,875 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:32:59,011 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:32:59,107 | INFO     | [payload] failed_post thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:32:59,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 13:33:18] 2026-01-10 12:33:00,068 | INFO     | [data] copytool_out thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:33:03,855 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:33:06,970 | INFO     | job.realtimelogging is not enabled
[2026-01-10 13:33:18] 2026-01-10 12:33:07,976 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 13:33:18] 2026-01-10 12:33:11,415 | INFO     | [monitor] cgroup control has ended
[2026-01-10 13:33:18] 2026-01-10 12:33:12,964 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140370339383104)>', '<ExcThread(monitor, started 140369849210624)>']
[2026-01-10 13:33:18] 2026-01-10 12:33:13,751 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 13:33:18] 2026-01-10 12:33:13,751 | INFO     | [monitor] control thread has ended
[2026-01-10 13:33:18] 2026-01-10 12:33:17,989 | INFO     | all workflow threads have been joined
[2026-01-10 13:33:18] 2026-01-10 12:33:17,990 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 13:33:18] 2026-01-10 12:33:17,990 | INFO     | traces error code: 0
[2026-01-10 13:33:18] 2026-01-10 12:33:17,990 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 13:33:18] 2026-01-10 12:33:18,040 [wrapper] ==== pilot stdout END ====
[2026-01-10 13:33:18] 2026-01-10 12:33:18,042 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 13:33:18] 2026-01-10 12:33:18,044 [wrapper] pilotpid: 3930356
[2026-01-10 13:33:18] 2026-01-10 12:33:18,046 [wrapper] Pilot exit status: 0
[2026-01-10 13:33:18] 2026-01-10 12:33:18,054 [wrapper] pandaids: 6962018501
[2026-01-10 13:33:18] 2026-01-10 12:33:18,069 [wrapper] cleanup supervisor_pilot 3951475 3930357
[2026-01-10 13:33:18] 2026-01-10 12:33:18,071 [wrapper] Test setup, not cleaning
[2026-01-10 13:33:18] 2026-01-10 12:33:18,074 [wrapper] apfmon messages muted
[2026-01-10 13:33:18] 2026-01-10 12:33:18,076 [wrapper] ==== wrapper stdout END ====
[2026-01-10 13:33:18] 2026-01-10 12:33:18,078 [wrapper] ==== wrapper stderr END ====
[2026-01-10 13:33:18]  *** Error codes and diagnostics ***
[2026-01-10 13:33:18]     "exeErrorCode": 0,
[2026-01-10 13:33:18]     "exeErrorDiag": "",
[2026-01-10 13:33:18]     "pilotErrorCode": 0,
[2026-01-10 13:33:18]     "pilotErrorDiag": "",
[2026-01-10 13:33:18]  *** Listing of results directory ***
[2026-01-10 13:33:18] total 448108
[2026-01-10 13:33:18] -rw-r--r-- 1 boinc boinc    579449 Jan  7 16:25 pilot3.tar.gz
[2026-01-10 13:33:18] -rwx------ 1 boinc boinc     36322 Jan  7 16:35 runpilot2-wrapper.sh
[2026-01-10 13:33:18] -rw-r--r-- 1 boinc boinc      5112 Jan  7 16:38 queuedata.json
[2026-01-10 13:33:18] -rw-r--r-- 1 boinc boinc       100 Jan 10 11:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 13:33:18] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 11:39 run_atlas
[2026-01-10 13:33:18] -rw-r--r-- 1 boinc boinc       105 Jan 10 11:39 job.xml
[2026-01-10 13:33:18] -rw-r--r-- 2 boinc boinc 226726513 Jan 10 11:39 EVNT.47898824._000522.pool.root.1
[2026-01-10 13:33:18] -rw-r--r-- 2 boinc boinc    592393 Jan 10 11:39 input.tar.gz
[2026-01-10 13:33:18] -rw-r--r-- 2 boinc boinc     15847 Jan 10 11:39 start_atlas.sh
[2026-01-10 13:33:18] drwxrwx--x 2 boinc boinc      4096 Jan 10 11:39 shared
[2026-01-10 13:33:18] -rw-r--r-- 1 boinc boinc         0 Jan 10 11:39 boinc_setup_complete
[2026-01-10 13:33:18] -rw-r--r-- 1 boinc boinc      6448 Jan 10 11:39 init_data.xml
[2026-01-10 13:33:18] -rw-r--r-- 1 boinc boinc         0 Jan 10 11:39 boinc_lockfile
[2026-01-10 13:33:18] -rw-r--r-- 1 boinc boinc      2516 Jan 10 11:39 pandaJob.out
[2026-01-10 13:33:18] -rw------- 1 boinc boinc    989548 Jan 10 11:40 agis_schedconf.cvmfs.json
[2026-01-10 13:33:18] -rw------- 1 boinc boinc   1516240 Jan 10 11:40 agis_ddmendpoints.agis.ALL.json
[2026-01-10 13:33:18] drwx------ 5 boinc boinc      4096 Jan 10 11:40 pilot3
[2026-01-10 13:33:18] -rw------- 1 boinc boinc 225732382 Jan 10 13:32 HITS.47898826._010317.pool.root.1
[2026-01-10 13:33:18] -rw-r--r-- 1 boinc boinc       529 Jan 10 13:32 boinc_task_state.xml
[2026-01-10 13:33:18] -rw------- 1 boinc boinc        95 Jan 10 13:32 pilot_heartbeat.json
[2026-01-10 13:33:18] -rw------- 1 boinc boinc      1012 Jan 10 13:32 memory_monitor_summary.json
[2026-01-10 13:33:18] -rw------- 1 boinc boinc    276442 Jan 10 13:32 log.47898826._010317.job.log.tgz.1
[2026-01-10 13:33:18] -rw------- 1 boinc boinc      7751 Jan 10 13:32 heartbeat.json
[2026-01-10 13:33:18] -rw-r--r-- 1 boinc boinc      8192 Jan 10 13:33 boinc_mmap_file
[2026-01-10 13:33:18] -rw-r--r-- 1 boinc boinc        27 Jan 10 13:33 wrapper_checkpoint.txt
[2026-01-10 13:33:18] -rw------- 1 boinc boinc      4814 Jan 10 13:33 pilotlog.txt
[2026-01-10 13:33:18] -rw------- 1 boinc boinc    977447 Jan 10 13:33 log.47898826._010317.job.log.1
[2026-01-10 13:33:18] -rw------- 1 boinc boinc       357 Jan 10 13:33 output.list
[2026-01-10 13:33:18] -rw-r--r-- 1 boinc boinc       620 Jan 10 13:33 runtime_log
[2026-01-10 13:33:18] -rw------- 1 boinc boinc   1269760 Jan 10 13:33 result.tar.gz
[2026-01-10 13:33:18] -rw-r--r-- 1 boinc boinc      8912 Jan 10 13:33 runtime_log.err
[2026-01-10 13:33:18] -rw------- 1 boinc boinc       662 Jan 10 13:33 jnbLDmIkkx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKQiKDmj1ZiRo.diag
[2026-01-10 13:33:18] -rw-r--r-- 1 boinc boinc      7769 Jan 10 13:33 stderr.txt
[2026-01-10 13:33:18] HITS file was successfully produced:
[2026-01-10 13:33:18] -rw------- 1 boinc boinc 225732382 Jan 10 13:32 shared/HITS.pool.root.1
[2026-01-10 13:33:18]  *** Contents of shared directory: ***
[2026-01-10 13:33:18] total 443704
[2026-01-10 13:33:18] -rw-r--r-- 2 boinc boinc 226726513 Jan 10 11:39 ATLAS.root_0
[2026-01-10 13:33:18] -rw-r--r-- 2 boinc boinc    592393 Jan 10 11:39 input.tar.gz
[2026-01-10 13:33:18] -rw-r--r-- 2 boinc boinc     15847 Jan 10 11:39 start_atlas.sh
[2026-01-10 13:33:18] -rw------- 1 boinc boinc 225732382 Jan 10 13:32 HITS.pool.root.1
[2026-01-10 13:33:18] -rw------- 1 boinc boinc   1269760 Jan 10 13:33 result.tar.gz
13:33:19 (3926630): run_atlas exited; CPU time 19564.570780
13:33:19 (3926630): called boinc_finish(0)

</stderr_txt>
]]>

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