Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:01:33 (30401): wrapper (7.7.26015): starting
11:01:33 (30401): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 11:01:33] Arguments: --nthreads 8
[2026-01-10 11:01:33] Threads: 8
[2026-01-10 11:01:33] Checking for CVMFS
[2026-01-10 11:01:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 11:01:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 11:01:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 11:01:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 11:01:36] 2.11.2.0 22272 36708 100696 154974 0 61 14013850 25165825 899 130560 0 16420431 99.848 11392886 2925 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 11:01:36] CVMFS is ok
[2026-01-10 11:01:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 11:01:36] Checking for apptainer binary...
[2026-01-10 11:01:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 11:01:36] Running /usr/bin/apptainer --version
[2026-01-10 11:01:36] apptainer version 1.3.2-1.el7
[2026-01-10 11:01:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 11:01:46] cg-vwn457.simple-grid.lan
[2026-01-10 11:01:46] apptainer works
[2026-01-10 11:01:46] Set ATHENA_PROC_NUMBER=8
[2026-01-10 11:01:46] Set ATHENA_CORE_NUMBER=8
[2026-01-10 11:01:46] Starting ATLAS job with PandaID=6963375811
[2026-01-10 11:01:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 11:29:47]  *** The last 200 lines of the pilot log: ***
[2026-01-11 11:29:47] 2026-01-11 10:28:37,707 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 11:29:47] 2026-01-11 10:28:39,285 | INFO     | time since job start (87756s) is within the limit (349056.0s)
[2026-01-11 11:29:47] 2026-01-11 10:28:40,224 | INFO     | monitor loop #5919: job 0:6963375811 is in state 'finished'
[2026-01-11 11:29:47] 2026-01-11 10:28:40,224 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 11:29:47] 2026-01-11 10:28:41,292 | INFO     | time since job start (87758s) is within the limit (349056.0s)
[2026-01-11 11:29:47] 2026-01-11 10:28:42,443 | INFO     | PID=1762 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-11 11:29:47] 2026-01-11 10:28:42,443 | INFO     | .. there are 2 such processes running
[2026-01-11 11:29:47] 2026-01-11 10:28:42,734 | INFO     | monitor loop #5920: job 0:6963375811 is in state 'finished'
[2026-01-11 11:29:47] 2026-01-11 10:28:42,734 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 11:29:47] 2026-01-11 10:28:43,445 | INFO     | time since job start (87760s) is within the limit (349056.0s)
[2026-01-11 11:29:47] 2026-01-11 10:28:45,247 | INFO     | monitor loop #5921: job 0:6963375811 is in state 'finished'
[2026-01-11 11:29:47] 2026-01-11 10:28:45,247 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 11:29:47] 2026-01-11 10:28:45,454 | INFO     | time since job start (87762s) is within the limit (349056.0s)
[2026-01-11 11:29:47] 2026-01-11 10:28:47,460 | INFO     | time since job start (87764s) is within the limit (349056.0s)
[2026-01-11 11:29:47] 2026-01-11 10:28:47,755 | INFO     | monitor loop #5922: job 0:6963375811 is in state 'finished'
[2026-01-11 11:29:47] 2026-01-11 10:28:47,755 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 11:29:47] 2026-01-11 10:28:49,466 | INFO     | time since job start (87766s) is within the limit (349056.0s)
[2026-01-11 11:29:47] 2026-01-11 10:28:49,592 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 11:29:47] 2026-01-11 10:28:49,593 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2026-01-11 11:29:47] 2026-01-11 10:28:49,595 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6963375811/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 11:29:47] 2026-01-11 10:28:49,596 | INFO     | extracted standard info from prmon json
[2026-01-11 11:29:47] 2026-01-11 10:28:49,596 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 11:29:47] 2026-01-11 10:28:49,596 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 11:29:47] 2026-01-11 10:28:49,629 | INFO     | fitting pss+swap vs Time
[2026-01-11 11:29:47] 2026-01-11 10:28:49,632 | INFO     | sum of square deviations: 901655260871.7249
[2026-01-11 11:29:47] 2026-01-11 10:28:49,692 | INFO     | sum of deviations: 4130124116574.6455
[2026-01-11 11:29:47] 2026-01-11 10:28:49,692 | INFO     | mean x: 1768083604.660589
[2026-01-11 11:29:47] 2026-01-11 10:28:49,692 | INFO     | mean y: 2796053.997194951
[2026-01-11 11:29:47] 2026-01-11 10:28:49,693 | INFO     | intersect: -8096091683.505637
[2026-01-11 11:29:47] 2026-01-11 10:28:49,694 | INFO     | chi2: 34.31486691421047
[2026-01-11 11:29:47] 2026-01-11 10:28:49,696 | INFO     | sum of square deviations: 892178860259.2904
[2026-01-11 11:29:47] 2026-01-11 10:28:49,750 | INFO     | sum of deviations: 4605366727063.214
[2026-01-11 11:29:47] 2026-01-11 10:28:49,750 | INFO     | mean x: 1768083451.7459536
[2026-01-11 11:29:47] 2026-01-11 10:28:49,750 | INFO     | mean y: 2803722.2111189305
[2026-01-11 11:29:47] 2026-01-11 10:28:49,750 | INFO     | intersect: -9123923060.998495
[2026-01-11 11:29:47] 2026-01-11 10:28:49,752 | INFO     | chi2: 30.991611150560367
[2026-01-11 11:29:47] 2026-01-11 10:28:49,752 | INFO     | current chi2=30.991611150560367 (change=9.68459464510957 %)
[2026-01-11 11:29:47] 2026-01-11 10:28:49,752 | INFO     | right removable region: 1420
[2026-01-11 11:29:47] 2026-01-11 10:28:49,754 | INFO     | sum of square deviations: 892219235557.8119
[2026-01-11 11:29:47] 2026-01-11 10:28:49,811 | INFO     | sum of deviations: 3526972559600.1646
[2026-01-11 11:29:47] 2026-01-11 10:28:49,812 | INFO     | mean x: 1768083757.2491202
[2026-01-11 11:29:47] 2026-01-11 10:28:49,812 | INFO     | mean y: 2805807.324419423
[2026-01-11 11:29:47] 2026-01-11 10:28:49,812 | INFO     | intersect: -6986488579.49038
[2026-01-11 11:29:47] 2026-01-11 10:28:49,814 | INFO     | chi2: 29.198388209761784
[2026-01-11 11:29:47] 2026-01-11 10:28:49,814 | INFO     | current chi2=29.198388209761784 (change=14.910384811458643 %)
[2026-01-11 11:29:47] 2026-01-11 10:28:49,814 | INFO     | left removable region: 10
[2026-01-11 11:29:47] 2026-01-11 10:28:49,816 | INFO     | sum of square deviations: 871644377413.3075
[2026-01-11 11:29:47] 2026-01-11 10:28:49,870 | INFO     | sum of deviations: 3542746076023.527
[2026-01-11 11:29:47] 2026-01-11 10:28:49,871 | INFO     | mean x: 1768083726.3375885
[2026-01-11 11:29:47] 2026-01-11 10:28:49,871 | INFO     | mean y: 2824425.578723404
[2026-01-11 11:29:47] 2026-01-11 10:28:49,871 | INFO     | intersect: -7183445394.863667
[2026-01-11 11:29:47] 2026-01-11 10:28:49,873 | INFO     | chi2: 20.73748547064763
[2026-01-11 11:29:47] 2026-01-11 10:28:49,873 | INFO     | current memory leak: 4.06 B/s (using 1410 data points, chi2=20.74)
[2026-01-11 11:29:47] 2026-01-11 10:28:49,874 | INFO     | could have reported an average CPU frequency of 2250 MHz (48 samples)
[2026-01-11 11:29:47] 2026-01-11 10:28:49,874 | INFO     | ..............................
[2026-01-11 11:29:47] 2026-01-11 10:28:49,875 | INFO     | . Timing measurements:
[2026-01-11 11:29:47] 2026-01-11 10:28:49,875 | INFO     | . get job = 0 s
[2026-01-11 11:29:47] 2026-01-11 10:28:49,875 | INFO     | . initial setup = 11 s
[2026-01-11 11:29:47] 2026-01-11 10:28:49,875 | INFO     | . payload setup = 169 s
[2026-01-11 11:29:47] 2026-01-11 10:28:49,875 | INFO     | . stage-in = 0 s
[2026-01-11 11:29:47] 2026-01-11 10:28:49,875 | INFO     | . payload execution = 87262 s
[2026-01-11 11:29:47] 2026-01-11 10:28:49,875 | INFO     | . stage-out = 5 s
[2026-01-11 11:29:47] 2026-01-11 10:28:49,875 | INFO     | . log creation = 2 s
[2026-01-11 11:29:47] 2026-01-11 10:28:49,875 | INFO     | ..............................
[2026-01-11 11:29:47] 2026-01-11 10:28:50,003 | INFO     | 
[2026-01-11 11:29:47] 2026-01-11 10:28:50,003 | INFO     | job summary report
[2026-01-11 11:29:47] 2026-01-11 10:28:50,003 | INFO     | --------------------------------------------------
[2026-01-11 11:29:47] 2026-01-11 10:28:50,003 | INFO     | PanDA job id: 6963375811
[2026-01-11 11:29:47] 2026-01-11 10:28:50,003 | INFO     | task id: 47962010
[2026-01-11 11:29:47] 2026-01-11 10:28:50,003 | INFO     | errors: (none)
[2026-01-11 11:29:47] 2026-01-11 10:28:50,003 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 11:29:47] 2026-01-11 10:28:50,004 | INFO     | pilot state: finished 
[2026-01-11 11:29:47] 2026-01-11 10:28:50,004 | INFO     | transexitcode: 0
[2026-01-11 11:29:47] 2026-01-11 10:28:50,004 | INFO     | exeerrorcode: 0
[2026-01-11 11:29:47] 2026-01-11 10:28:50,004 | INFO     | exeerrordiag: 
[2026-01-11 11:29:47] 2026-01-11 10:28:50,004 | INFO     | exitcode: 0
[2026-01-11 11:29:47] 2026-01-11 10:28:50,004 | INFO     | exitmsg: OK
[2026-01-11 11:29:47] 2026-01-11 10:28:50,004 | INFO     | cpuconsumptiontime: 329895 s
[2026-01-11 11:29:47] 2026-01-11 10:28:50,004 | INFO     | nevents: 900
[2026-01-11 11:29:47] 2026-01-11 10:28:50,004 | INFO     | neventsw: 0
[2026-01-11 11:29:47] 2026-01-11 10:28:50,004 | INFO     | pid: 8218
[2026-01-11 11:29:47] 2026-01-11 10:28:50,004 | INFO     | pgrp: 8218
[2026-01-11 11:29:47] 2026-01-11 10:28:50,005 | INFO     | corecount: 8
[2026-01-11 11:29:47] 2026-01-11 10:28:50,005 | INFO     | event service: False
[2026-01-11 11:29:47] 2026-01-11 10:28:50,005 | INFO     | sizes: {0: 2283792, 1: 2284649, 2: 2284677, 13: 2284677, 24: 2284733, 34: 2284761, 45: 2284917, 56: 2284945, 66: 2284973, 77: 2285001, 88: 2285057, 99: 2285365, 10
[2026-01-11 11:29:47] 2026-01-11 10:28:50,005 | INFO     | --------------------------------------------------
[2026-01-11 11:29:47] 2026-01-11 10:28:50,005 | INFO     | 
[2026-01-11 11:29:47] 2026-01-11 10:28:50,005 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-01-11 11:29:47] 2026-01-11 10:28:50,629 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,630 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,630 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,630 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,630 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,630 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,630 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,630 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,630 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,631 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,631 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,631 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,631 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,631 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,631 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,631 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,631 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,631 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 11:29:47] 2026-01-11 10:28:50,632 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,632 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 11:29:47] 2026-01-11 10:28:50,632 | INFO     | job 6963375811 has completed (purged errors)
[2026-01-11 11:29:47] 2026-01-11 10:28:50,632 | INFO     | overall cleanup function is called
[2026-01-11 11:29:47] 2026-01-11 10:28:51,659 | INFO     | --- collectZombieJob: --- 10, [8218]
[2026-01-11 11:29:47] 2026-01-11 10:28:51,659 | INFO     | zombie collector waiting for pid 8218
[2026-01-11 11:29:47] 2026-01-11 10:28:51,659 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 11:29:47] 2026-01-11 10:28:51,659 | INFO     | collected zombie processes
[2026-01-11 11:29:47] 2026-01-11 10:28:51,659 | INFO     | will attempt to kill all subprocesses of pid=8218
[2026-01-11 11:29:47] 2026-01-11 10:28:51,740 | INFO     | process IDs to be killed: [8218] (in reverse order)
[2026-01-11 11:29:47] 2026-01-11 10:28:52,627 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 11:29:47] 2026-01-11 10:28:52,628 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 11:29:47] 2026-01-11 10:28:52,630 | INFO     | did not find any defunct processes belonging to 8218
[2026-01-11 11:29:47] 2026-01-11 10:28:52,632 | INFO     | did not find any defunct processes belonging to 8218
[2026-01-11 11:29:47] 2026-01-11 10:28:52,632 | INFO     | ready for new job
[2026-01-11 11:29:47] 2026-01-11 10:28:52,632 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 11:29:47] 2026-01-11 10:28:52,638 | INFO     | ***************************************
[2026-01-11 11:29:47] 2026-01-11 10:28:52,638 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 11:29:47] 2026-01-11 10:28:52,638 | INFO     | ***************************************
[2026-01-11 11:29:47] 2026-01-11 10:28:52,638 | INFO     | 
[2026-01-11 11:29:47] 2026-01-11 10:28:52,639 | INFO     | pilot is running in a VM
[2026-01-11 11:29:47] 2026-01-11 10:28:52,639 | INFO     | architecture information:
[2026-01-11 11:29:47] 2026-01-11 10:28:52,642 | INFO     | executing command: cat /etc/os-release
[2026-01-11 11:29:47] 2026-01-11 10:28:52,985 | INFO     | cat /etc/os-release:
[2026-01-11 11:29:47] NAME="CentOS Linux"
[2026-01-11 11:29:47] VERSION="7 (Core)"
[2026-01-11 11:29:47] ID="centos"
[2026-01-11 11:29:47] ID_LIKE="rhel fedora"
[2026-01-11 11:29:47] VERSION_ID="7"
[2026-01-11 11:29:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 11:29:47] ANSI_COLOR="0;31"
[2026-01-11 11:29:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 11:29:47] HOME_URL="https://www.centos.org/"
[2026-01-11 11:29:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 11:29:47] 
[2026-01-11 11:29:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 11:29:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 11:29:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 11:29:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 11:29:47] 
[2026-01-11 11:29:47] 2026-01-11 10:28:52,985 | INFO     | ***************************************
[2026-01-11 11:29:47] 2026-01-11 10:28:53,489 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-01-11 11:29:47] 2026-01-11 10:28:53,741 | INFO     | sufficient remaining disk space (496725131264 B)
[2026-01-11 11:29:47] 2026-01-11 10:28:53,742 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 11:29:47] 2026-01-11 10:28:53,742 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 11:29:47] 2026-01-11 10:28:53,742 | INFO     | update_server=False
[2026-01-11 11:29:47] 2026-01-11 10:28:53,742 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 11:29:47] 2026-01-11 10:28:53,742 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 11:29:47] 2026-01-11 10:28:53,786 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 11:29:47] 2026-01-11 10:28:53,786 | INFO     | aborting loop
[2026-01-11 11:29:47] 2026-01-11 10:28:53,948 | INFO     | all payload control threads have been joined
[2026-01-11 11:29:47] 2026-01-11 10:28:54,503 | INFO     | all data control threads have been joined
[2026-01-11 11:29:47] 2026-01-11 10:28:54,719 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 11:29:47] 2026-01-11 10:28:54,748 | INFO     | [job] retrieve thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:28:54,792 | INFO     | [job] job monitor thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:28:54,954 | INFO     | [payload] control thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:28:54,969 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:28:54,969 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:28:55,019 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 11:29:47] 2026-01-11 10:28:55,039 | INFO     | [payload] failed_post thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:28:55,044 | INFO     | all job control threads have been joined
[2026-01-11 11:29:47] 2026-01-11 10:28:55,098 | INFO     | [payload] validate_post thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:28:55,295 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:28:55,422 | INFO     | [job] validate thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:28:55,459 | INFO     | [data] copytool_in thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:28:55,509 | INFO     | [data] control thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:28:55,722 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:28:55,749 | INFO     | [data] copytool_out thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:28:56,025 | INFO     | [job] queue monitor thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:28:56,050 | INFO     | [job] control thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:28:58,728 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 11:29:47] 2026-01-11 10:29:22,594 | INFO     | PID=1762 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-11 11:29:47] 2026-01-11 10:29:22,595 | INFO     | .. there are 2 such processes running
[2026-01-11 11:29:47] 2026-01-11 10:29:22,595 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 11:29:47] 2026-01-11 10:29:22,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 11:29:47] 2026-01-11 10:29:22,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 11:29:47] 2026-01-11 10:29:35,849 | INFO     | [monitor] cgroup control has ended
[2026-01-11 11:29:47] 2026-01-11 10:29:36,935 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139826358724416)>', '<ExcThread(monitor, started 139825906689792)>']
[2026-01-11 11:29:47] 2026-01-11 10:29:37,685 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 11:29:47] 2026-01-11 10:29:37,685 | INFO     | [monitor] control thread has ended
[2026-01-11 11:29:47] 2026-01-11 10:29:41,961 | INFO     | all workflow threads have been joined
[2026-01-11 11:29:47] 2026-01-11 10:29:41,961 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 11:29:47] 2026-01-11 10:29:41,961 | INFO     | traces error code: 0
[2026-01-11 11:29:47] 2026-01-11 10:29:41,961 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 11:29:47] 2026-01-11 10:29:42,430 [wrapper] ==== pilot stdout END ====
[2026-01-11 11:29:47] 2026-01-11 10:29:42,548 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 11:29:47] 2026-01-11 10:29:42,662 [wrapper] pilotpid: 1762
[2026-01-11 11:29:47] 2026-01-11 10:29:42,730 [wrapper] Pilot exit status: 0
[2026-01-11 11:29:47] 2026-01-11 10:29:43,127 [wrapper] pandaids: 6963375811
[2026-01-11 11:29:47] 2026-01-11 10:29:43,810 [wrapper] cleanup supervisor_pilot 29985 1763
[2026-01-11 11:29:47] 2026-01-11 10:29:43,927 [wrapper] Test setup, not cleaning
[2026-01-11 11:29:47] 2026-01-11 10:29:44,031 [wrapper] apfmon messages muted
[2026-01-11 11:29:47] 2026-01-11 10:29:44,124 [wrapper] ==== wrapper stdout END ====
[2026-01-11 11:29:47] 2026-01-11 10:29:44,231 [wrapper] ==== wrapper stderr END ====
[2026-01-11 11:29:47]  *** Error codes and diagnostics ***
[2026-01-11 11:29:47]     "exeErrorCode": 0,
[2026-01-11 11:29:47]     "exeErrorDiag": "",
[2026-01-11 11:29:47]     "pilotErrorCode": 0,
[2026-01-11 11:29:47]     "pilotErrorDiag": "",
[2026-01-11 11:29:47]  *** Listing of results directory ***
[2026-01-11 11:29:47] total 1191568
[2026-01-11 11:29:47] -rwx------. 1 boinc boinc     36322 Jan  9 08:17 runpilot2-wrapper.sh
[2026-01-11 11:29:47] -rw-r--r--. 1 boinc boinc    579449 Jan  9 08:20 pilot3.tar.gz
[2026-01-11 11:29:47] -rw-r--r--. 1 boinc boinc      5112 Jan  9 08:21 queuedata.json
[2026-01-11 11:29:47] -rw-r--r--. 1 boinc boinc       100 Jan 10 11:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 11:29:47] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 11:01 run_atlas
[2026-01-11 11:29:47] -rw-r--r--. 1 boinc boinc       105 Jan 10 11:01 job.xml
[2026-01-11 11:29:47] -rw-r--r--. 1 boinc boinc      6391 Jan 10 11:01 init_data.xml
[2026-01-11 11:29:47] -rw-r--r--. 2 boinc boinc 392415441 Jan 10 11:01 EVNT.47962006._000077.pool.root.1
[2026-01-11 11:29:47] -rw-r--r--. 2 boinc boinc     15847 Jan 10 11:01 start_atlas.sh
[2026-01-11 11:29:47] drwxrwx--x. 2 boinc boinc        68 Jan 10 11:01 shared
[2026-01-11 11:29:47] -rw-r--r--. 2 boinc boinc    592612 Jan 10 11:01 input.tar.gz
[2026-01-11 11:29:47] -rw-r--r--. 1 boinc boinc         0 Jan 10 11:01 boinc_lockfile
[2026-01-11 11:29:47] -rw-r--r--. 1 boinc boinc      2891 Jan 10 11:01 pandaJob.out
[2026-01-11 11:29:47] -rw-------. 1 boinc boinc    989548 Jan 10 11:05 agis_schedconf.cvmfs.json
[2026-01-11 11:29:47] drwx------. 5 boinc boinc      4096 Jan 10 11:06 pilot3
[2026-01-11 11:29:47] -rw-r--r--. 1 boinc boinc       533 Jan 11 10:59 boinc_task_state.xml
[2026-01-11 11:29:47] -rw-------. 1 boinc boinc 795379432 Jan 11 11:25 HITS.47962010._000984.pool.root.1
[2026-01-11 11:29:47] -rw-------. 1 boinc boinc      1032 Jan 11 11:26 memory_monitor_summary.json
[2026-01-11 11:29:47] -rw-------. 1 boinc boinc   1516240 Jan 11 11:26 agis_ddmendpoints.agis.ALL.json
[2026-01-11 11:29:47] -rw-------. 1 boinc boinc   2490935 Jan 11 11:26 log.47962010._000984.job.log.tgz.1
[2026-01-11 11:29:47] -rw-------. 1 boinc boinc        96 Jan 11 11:28 pilot_heartbeat.json
[2026-01-11 11:29:47] -rw-------. 1 boinc boinc      8617 Jan 11 11:28 heartbeat.json
[2026-01-11 11:29:47] -rw-r--r--. 1 boinc boinc        29 Jan 11 11:29 wrapper_checkpoint.txt
[2026-01-11 11:29:47] -rw-r--r--. 1 boinc boinc      8192 Jan 11 11:29 boinc_mmap_file
[2026-01-11 11:29:47] -rw-------. 1 boinc boinc      4884 Jan 11 11:29 pilotlog.txt
[2026-01-11 11:29:47] -rw-------. 1 boinc boinc  11741598 Jan 11 11:29 log.47962010._000984.job.log.1
[2026-01-11 11:29:47] -rw-------. 1 boinc boinc       353 Jan 11 11:29 output.list
[2026-01-11 11:29:47] -rw-r--r--. 1 boinc boinc       620 Jan 11 11:29 runtime_log
[2026-01-11 11:29:47] -rw-------. 1 boinc boinc  14254080 Jan 11 11:29 result.tar.gz
[2026-01-11 11:29:47] -rw-r--r--. 1 boinc boinc      8833 Jan 11 11:29 runtime_log.err
[2026-01-11 11:29:47] -rw-------. 1 boinc boinc       662 Jan 11 11:29 gzzLDmFvLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZbmKDmWtMeom.diag
[2026-01-11 11:29:47] -rw-r--r--. 1 boinc boinc     21405 Jan 11 11:29 stderr.txt
[2026-01-11 11:29:47] HITS file was successfully produced:
[2026-01-11 11:29:47] -rw-------. 1 boinc boinc 795379432 Jan 11 11:25 shared/HITS.pool.root.1
[2026-01-11 11:29:47]  *** Contents of shared directory: ***
[2026-01-11 11:29:47] total 1174476
[2026-01-11 11:29:47] -rw-r--r--. 2 boinc boinc 392415441 Jan 10 11:01 ATLAS.root_0
[2026-01-11 11:29:47] -rw-r--r--. 2 boinc boinc     15847 Jan 10 11:01 start_atlas.sh
[2026-01-11 11:29:47] -rw-r--r--. 2 boinc boinc    592612 Jan 10 11:01 input.tar.gz
[2026-01-11 11:29:47] -rw-------. 1 boinc boinc 795379432 Jan 11 11:25 HITS.pool.root.1
[2026-01-11 11:29:47] -rw-------. 1 boinc boinc  14254080 Jan 11 11:29 result.tar.gz
11:29:48 (30401): run_atlas exited; CPU time 330229.530393
11:29:48 (30401): called boinc_finish(0)

</stderr_txt>
]]>

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