Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
04:18:06 (4716): wrapper (7.7.26015): starting
04:18:06 (4716): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 04:18:06] Arguments: --nthreads 8
[2026-01-10 04:18:06] Threads: 8
[2026-01-10 04:18:06] Checking for CVMFS
[2026-01-10 04:18:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 04:18:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 04:18:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 04:18:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 04:18:06] 2.11.0.0 4227 130339 93316 154966 1 1 2819356 4096001 0 130560 2 6050288 99.086 10866277 606 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-10 04:18:06] CVMFS is ok
[2026-01-10 04:18:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 04:18:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 04:18:06] Further information can be found at the LHC@home message board.
[2026-01-10 04:18:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 04:18:06] Checking for apptainer binary...
[2026-01-10 04:18:06] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-10 04:18:06] apptainer is not installed, using version from CVMFS
[2026-01-10 04:18:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 04:18:06] WARNING: Environment variable TMPDIR already has value [/tmp/job_11010232/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node392
[2026-01-10 04:18:06] apptainer works
[2026-01-10 04:18:06] Set ATHENA_PROC_NUMBER=8
[2026-01-10 04:18:06] Set ATHENA_CORE_NUMBER=8
[2026-01-10 04:18:06] Starting ATLAS job with PandaID=6963381814
[2026-01-10 04:18:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11010232/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 08:57:45]  *** The last 200 lines of the pilot log: ***
[2026-01-10 08:57:45] 2026-01-10 07:56:43,337 | INFO     | this job has now completed (state=finished)
[2026-01-10 08:57:45] 2026-01-10 07:56:43,337 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 08:57:45] 2026-01-10 07:56:43,337 | INFO     | log transfer has been attempted: DONE
[2026-01-10 08:57:45] 2026-01-10 07:56:43,337 | INFO     | job 6963381814 has finished - writing final server update
[2026-01-10 08:57:45] 2026-01-10 07:56:43,337 | INFO     | total number of processed events: 900 (read)
[2026-01-10 08:57:45] 2026-01-10 07:56:43,337 | INFO     | executing command: lscpu
[2026-01-10 08:57:45] 2026-01-10 07:56:43,355 | INFO     | monitor loop #1230: job 0:6963381814 is in state 'finished'
[2026-01-10 08:57:45] 2026-01-10 07:56:43,355 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 08:57:45] 2026-01-10 07:56:43,367 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 08:57:45] 2026-01-10 07:56:43,711 | INFO     | time since job start (16712s) is within the limit (349056.0s)
[2026-01-10 08:57:45] 2026-01-10 07:56:44,835 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 08:57:45] 2026-01-10 07:56:44,839 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2521.4733906250003
[2026-01-10 08:57:45] 2026-01-10 07:56:44,844 | INFO     | using path: /tmp/job_11010232/atlas/pilot/slots/0/PanDA_Pilot-6963381814/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 08:57:45] 2026-01-10 07:56:44,845 | INFO     | extracted standard info from prmon json
[2026-01-10 08:57:45] 2026-01-10 07:56:44,845 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 08:57:45] 2026-01-10 07:56:44,845 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 08:57:45] 2026-01-10 07:56:44,847 | INFO     | fitting pss+swap vs Time
[2026-01-10 08:57:45] 2026-01-10 07:56:44,847 | INFO     | sum of square deviations: 6378568304.496358
[2026-01-10 08:57:45] 2026-01-10 07:56:44,848 | INFO     | sum of deviations: 2020213740092.539
[2026-01-10 08:57:45] 2026-01-10 07:56:44,848 | INFO     | mean x: 1768023436.5036497
[2026-01-10 08:57:45] 2026-01-10 07:56:44,848 | INFO     | mean y: 5447277.459854014
[2026-01-10 08:57:45] 2026-01-10 07:56:44,849 | INFO     | intersect: -559961157879.4517
[2026-01-10 08:57:45] 2026-01-10 07:56:44,849 | INFO     | chi2: 6.842233751617306
[2026-01-10 08:57:45] 2026-01-10 07:56:44,849 | INFO     | sum of square deviations: 6035706366.996268
[2026-01-10 08:57:45] 2026-01-10 07:56:44,850 | INFO     | sum of deviations: 2115914218905.5322
[2026-01-10 08:57:45] 2026-01-10 07:56:44,850 | INFO     | mean x: 1768023284.0037174
[2026-01-10 08:57:45] 2026-01-10 07:56:44,850 | INFO     | mean y: 5489403.468401487
[2026-01-10 08:57:45] 2026-01-10 07:56:44,850 | INFO     | intersect: -619803589851.2039
[2026-01-10 08:57:45] 2026-01-10 07:56:44,850 | INFO     | chi2: 3.706575978043519
[2026-01-10 08:57:45] 2026-01-10 07:56:44,850 | INFO     | current chi2=3.706575978043519 (change=45.82798377551203 %)
[2026-01-10 08:57:45] 2026-01-10 07:56:44,850 | INFO     | sum of square deviations: 5705356291.9962015
[2026-01-10 08:57:45] 2026-01-10 07:56:44,851 | INFO     | sum of deviations: 2047625188505.0493
[2026-01-10 08:57:45] 2026-01-10 07:56:44,851 | INFO     | mean x: 1768023131.503788
[2026-01-10 08:57:45] 2026-01-10 07:56:44,851 | INFO     | mean y: 5457875.450757576
[2026-01-10 08:57:45] 2026-01-10 07:56:44,852 | INFO     | intersect: -634529619803.2952
[2026-01-10 08:57:45] 2026-01-10 07:56:44,852 | INFO     | chi2: 3.4546426392089993
[2026-01-10 08:57:45] 2026-01-10 07:56:44,852 | INFO     | current chi2=3.4546426392089993 (change=6.796929034421153 %)
[2026-01-10 08:57:45] 2026-01-10 07:56:44,852 | INFO     | right removable region: 263
[2026-01-10 08:57:45] 2026-01-10 07:56:44,852 | INFO     | sum of square deviations: 6035722470.0
[2026-01-10 08:57:45] 2026-01-10 07:56:44,853 | INFO     | sum of deviations: 1867040952164.0
[2026-01-10 08:57:45] 2026-01-10 07:56:44,853 | INFO     | mean x: 1768023589.0
[2026-01-10 08:57:45] 2026-01-10 07:56:44,853 | INFO     | mean y: 5515245.34944238
[2026-01-10 08:57:45] 2026-01-10 07:56:44,853 | INFO     | intersect: -546900420450.3607
[2026-01-10 08:57:45] 2026-01-10 07:56:44,853 | INFO     | chi2: 5.748822759047425
[2026-01-10 08:57:45] 2026-01-10 07:56:44,853 | INFO     | current chi2=5.748822759047425 (change=15.980322103310648 %)
[2026-01-10 08:57:45] 2026-01-10 07:56:44,853 | INFO     | left removable region: 10
[2026-01-10 08:57:45] 2026-01-10 07:56:44,854 | INFO     | sum of square deviations: 5021496942.0
[2026-01-10 08:57:45] 2026-01-10 07:56:44,854 | INFO     | sum of deviations: 1772548139603.0
[2026-01-10 08:57:45] 2026-01-10 07:56:44,854 | INFO     | mean x: 1768023406.0
[2026-01-10 08:57:45] 2026-01-10 07:56:44,854 | INFO     | mean y: 5579723.0
[2026-01-10 08:57:45] 2026-01-10 07:56:44,855 | INFO     | intersect: -624092500048.3407
[2026-01-10 08:57:45] 2026-01-10 07:56:44,855 | INFO     | chi2: 2.3170972641793495
[2026-01-10 08:57:45] 2026-01-10 07:56:44,855 | INFO     | current memory leak: 352.99 B/s (using 253 data points, chi2=2.32)
[2026-01-10 08:57:45] 2026-01-10 07:56:44,855 | INFO     | could have reported an average CPU frequency of 2630 MHz (13 samples)
[2026-01-10 08:57:45] 2026-01-10 07:56:44,855 | INFO     | ..............................
[2026-01-10 08:57:45] 2026-01-10 07:56:44,855 | INFO     | . Timing measurements:
[2026-01-10 08:57:45] 2026-01-10 07:56:44,855 | INFO     | . get job = 0 s
[2026-01-10 08:57:45] 2026-01-10 07:56:44,855 | INFO     | . initial setup = 1 s
[2026-01-10 08:57:45] 2026-01-10 07:56:44,855 | INFO     | . payload setup = 2 s
[2026-01-10 08:57:45] 2026-01-10 07:56:44,855 | INFO     | . stage-in = 0 s
[2026-01-10 08:57:45] 2026-01-10 07:56:44,855 | INFO     | . payload execution = 16686 s
[2026-01-10 08:57:45] 2026-01-10 07:56:44,855 | INFO     | . stage-out = 1 s
[2026-01-10 08:57:45] 2026-01-10 07:56:44,855 | INFO     | . log creation = 0 s
[2026-01-10 08:57:45] 2026-01-10 07:56:44,855 | INFO     | ..............................
[2026-01-10 08:57:45] 2026-01-10 07:56:45,209 | INFO     | 
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | job summary report
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | --------------------------------------------------
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | PanDA job id: 6963381814
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | task id: 47962010
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | errors: (none)
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | pilot state: finished 
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | transexitcode: 0
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | exeerrorcode: 0
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | exeerrordiag: 
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | exitcode: 0
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | exitmsg: OK
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | cpuconsumptiontime: 127968 s
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | nevents: 900
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | neventsw: 0
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | pid: 15214
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | pgrp: 15214
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | corecount: 8
[2026-01-10 08:57:45] 2026-01-10 07:56:45,210 | INFO     | event service: False
[2026-01-10 08:57:45] 2026-01-10 07:56:45,211 | INFO     | sizes: {0: 2284412, 1: 2284778, 2: 2285040, 11: 2285068, 16692: 2318001, 16694: 2327053, 16696: 2327237, 16701: 2327483}
[2026-01-10 08:57:45] 2026-01-10 07:56:45,211 | INFO     | --------------------------------------------------
[2026-01-10 08:57:45] 2026-01-10 07:56:45,211 | INFO     | 
[2026-01-10 08:57:45] 2026-01-10 07:56:45,211 | INFO     | executing command: ls -lF /tmp/job_11010232/atlas/pilot/slots/0
[2026-01-10 08:57:45] 2026-01-10 07:56:45,219 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,219 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,219 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,219 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,219 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,219 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,219 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,219 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,219 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,219 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,219 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,219 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,219 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,219 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,219 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,220 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,220 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,220 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 08:57:45] 2026-01-10 07:56:45,220 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,220 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 08:57:45] 2026-01-10 07:56:45,220 | INFO     | job 6963381814 has completed (purged errors)
[2026-01-10 08:57:45] 2026-01-10 07:56:45,220 | INFO     | overall cleanup function is called
[2026-01-10 08:57:45] 2026-01-10 07:56:46,227 | INFO     | --- collectZombieJob: --- 10, [15214]
[2026-01-10 08:57:45] 2026-01-10 07:56:46,227 | INFO     | zombie collector waiting for pid 15214
[2026-01-10 08:57:45] 2026-01-10 07:56:46,227 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 08:57:45] 2026-01-10 07:56:46,227 | INFO     | collected zombie processes
[2026-01-10 08:57:45] 2026-01-10 07:56:46,227 | INFO     | will attempt to kill all subprocesses of pid=15214
[2026-01-10 08:57:45] 2026-01-10 07:56:46,324 | INFO     | process IDs to be killed: [15214] (in reverse order)
[2026-01-10 08:57:45] 2026-01-10 07:56:46,357 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 08:57:45] 2026-01-10 07:56:46,357 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 08:57:45] 2026-01-10 07:56:46,360 | INFO     | did not find any defunct processes belonging to 15214
[2026-01-10 08:57:45] 2026-01-10 07:56:46,363 | INFO     | did not find any defunct processes belonging to 15214
[2026-01-10 08:57:45] 2026-01-10 07:56:46,363 | INFO     | ready for new job
[2026-01-10 08:57:45] 2026-01-10 07:56:46,363 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 08:57:45] 2026-01-10 07:56:46,364 | INFO     | ***************************************
[2026-01-10 08:57:45] 2026-01-10 07:56:46,364 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 08:57:45] 2026-01-10 07:56:46,365 | INFO     | ***************************************
[2026-01-10 08:57:45] 2026-01-10 07:56:46,365 | INFO     | 
[2026-01-10 08:57:45] 2026-01-10 07:56:46,377 | INFO     | architecture information:
[2026-01-10 08:57:45] 2026-01-10 07:56:46,378 | INFO     | executing command: cat /etc/os-release
[2026-01-10 08:57:45] 2026-01-10 07:56:46,384 | INFO     | cat /etc/os-release:
[2026-01-10 08:57:45] NAME="CentOS Linux"
[2026-01-10 08:57:45] VERSION="7 (Core)"
[2026-01-10 08:57:45] ID="centos"
[2026-01-10 08:57:45] ID_LIKE="rhel fedora"
[2026-01-10 08:57:45] VERSION_ID="7"
[2026-01-10 08:57:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 08:57:45] ANSI_COLOR="0;31"
[2026-01-10 08:57:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 08:57:45] HOME_URL="https://www.centos.org/"
[2026-01-10 08:57:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 08:57:45] 
[2026-01-10 08:57:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 08:57:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 08:57:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 08:57:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 08:57:45] 
[2026-01-10 08:57:45] 2026-01-10 07:56:46,384 | INFO     | ***************************************
[2026-01-10 08:57:45] 2026-01-10 07:56:46,887 | INFO     | executing command: df -mP /tmp/job_11010232/atlas/pilot/slots/0
[2026-01-10 08:57:45] 2026-01-10 07:56:46,892 | INFO     | sufficient remaining disk space (223833227264 B)
[2026-01-10 08:57:45] 2026-01-10 07:56:46,893 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 08:57:45] 2026-01-10 07:56:46,893 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 08:57:45] 2026-01-10 07:56:46,893 | INFO     | update_server=False
[2026-01-10 08:57:45] 2026-01-10 07:56:46,893 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 08:57:45] 2026-01-10 07:56:46,893 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 08:57:45] 2026-01-10 07:56:46,893 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 08:57:45] 2026-01-10 07:56:46,893 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 08:57:45] 2026-01-10 07:56:46,893 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 08:57:45] 2026-01-10 07:56:46,893 | INFO     | aborting loop
[2026-01-10 08:57:45] 2026-01-10 07:56:47,023 | INFO     | all payload control threads have been joined
[2026-01-10 08:57:45] 2026-01-10 07:56:47,481 | INFO     | all data control threads have been joined
[2026-01-10 08:57:45] 2026-01-10 07:56:47,496 | INFO     | all job control threads have been joined
[2026-01-10 08:57:45] 2026-01-10 07:56:47,896 | INFO     | [job] queue monitor thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:56:47,898 | INFO     | [job] retrieve thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:56:47,899 | INFO     | [job] job monitor thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:56:48,028 | INFO     | [payload] control thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:56:48,151 | INFO     | [data] copytool_in thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:56:48,215 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:56:48,437 | INFO     | [payload] validate_post thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:56:48,486 | INFO     | [data] control thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:56:48,501 | INFO     | [job] control thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:56:48,590 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:56:48,815 | INFO     | [payload] failed_post thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:56:48,898 | INFO     | [data] copytool_out thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:56:49,206 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:56:49,258 | INFO     | [job] validate thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:56:50,898 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:56:57,327 | INFO     | job.realtimelogging is not enabled
[2026-01-10 08:57:45] 2026-01-10 07:56:58,332 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 08:57:45] 2026-01-10 07:57:16,898 | INFO     | PID=8549 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 08:57:45] 2026-01-10 07:57:16,898 | INFO     | .. there are 3 such processes running
[2026-01-10 08:57:45] 2026-01-10 07:57:16,899 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 08:57:45] 2026-01-10 07:57:16,899 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 08:57:45] 2026-01-10 07:57:16,899 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 08:57:45] 2026-01-10 07:57:38,937 | INFO     | [monitor] cgroup control has ended
[2026-01-10 08:57:45] 2026-01-10 07:57:40,407 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2026-01-10 08:57:45] 2026-01-10 07:57:41,019 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 08:57:45] 2026-01-10 07:57:41,020 | INFO     | [monitor] control thread has ended
[2026-01-10 08:57:45] 2026-01-10 07:57:45,432 | INFO     | all workflow threads have been joined
[2026-01-10 08:57:45] 2026-01-10 07:57:45,432 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 08:57:45] 2026-01-10 07:57:45,432 | INFO     | traces error code: 0
[2026-01-10 08:57:45] 2026-01-10 07:57:45,432 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 08:57:45] 2026-01-10 07:57:45,487 [wrapper] ==== pilot stdout END ====
[2026-01-10 08:57:45] 2026-01-10 07:57:45,488 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 08:57:45] 2026-01-10 07:57:45,489 [wrapper] pilotpid: 8549
[2026-01-10 08:57:45] 2026-01-10 07:57:45,490 [wrapper] Pilot exit status: 0
[2026-01-10 08:57:45] 2026-01-10 07:57:45,495 [wrapper] pandaids: 6963381814
[2026-01-10 08:57:45] 2026-01-10 07:57:45,516 [wrapper] cleanup supervisor_pilot  6074 8550
[2026-01-10 08:57:45] 2026-01-10 07:57:45,517 [wrapper] Test setup, not cleaning
[2026-01-10 08:57:45] 2026-01-10 07:57:45,519 [wrapper] apfmon messages muted
[2026-01-10 08:57:45] 2026-01-10 07:57:45,520 [wrapper] ==== wrapper stdout END ====
[2026-01-10 08:57:45] 2026-01-10 07:57:45,521 [wrapper] ==== wrapper stderr END ====
[2026-01-10 08:57:45]  *** Error codes and diagnostics ***
[2026-01-10 08:57:45]     "exeErrorCode": 0,
[2026-01-10 08:57:45]     "exeErrorDiag": "",
[2026-01-10 08:57:45]     "pilotErrorCode": 0,
[2026-01-10 08:57:45]     "pilotErrorDiag": "",
[2026-01-10 08:57:45]  *** Listing of results directory ***
[2026-01-10 08:57:45] total 1171132
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user    579449 Jan  9 08:13 pilot3.tar.gz
[2026-01-10 08:57:45] -rwx------ 1 mf493845 unix-user     36322 Jan  9 08:15 runpilot2-wrapper.sh
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user      5112 Jan  9 08:16 queuedata.json
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user       100 Jan 10 02:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 08:57:45] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 10 02:38 run_atlas
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user       105 Jan 10 02:38 job.xml
[2026-01-10 08:57:45] -rw-r--r-- 2 mf493845 unix-user 392245836 Jan 10 04:18 EVNT.47962006._000122.pool.root.1
[2026-01-10 08:57:45] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 04:18 start_atlas.sh
[2026-01-10 08:57:45] drwxrwx--x 2 mf493845 unix-user       100 Jan 10 04:18 shared
[2026-01-10 08:57:45] -rw-r--r-- 2 mf493845 unix-user    592615 Jan 10 04:18 input.tar.gz
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user      6391 Jan 10 04:18 init_data.xml
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user         0 Jan 10 04:18 boinc_setup_complete
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user      8192 Jan 10 04:18 boinc_mmap_file
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user         0 Jan 10 04:18 boinc_lockfile
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user      2893 Jan 10 04:18 pandaJob.out
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user    989374 Jan 10 04:18 agis_schedconf.cvmfs.json
[2026-01-10 08:57:45] drwx------ 5 mf493845 unix-user       440 Jan 10 04:18 pilot3
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user 795173279 Jan 10 08:56 HITS.47962010._001762.pool.root.1
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user      1027 Jan 10 08:56 memory_monitor_summary.json
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user   1516240 Jan 10 08:56 agis_ddmendpoints.agis.ALL.json
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user   1547764 Jan 10 08:56 log.47962010._001762.job.log.tgz.1
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user      8584 Jan 10 08:56 heartbeat.json
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user        95 Jan 10 08:57 pilot_heartbeat.json
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user      4906 Jan 10 08:57 pilotlog.txt
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user   2412999 Jan 10 08:57 log.47962010._001762.job.log.1
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user       353 Jan 10 08:57 output.list
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user       620 Jan 10 08:57 runtime_log
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user   3983360 Jan 10 08:57 result.tar.gz
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user      9221 Jan 10 08:57 runtime_log.err
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user       651 Jan 10 08:57 oKWKDmUtLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2LhKDm2J5WYm.diag
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user     21819 Jan 10 08:57 stderr.txt
[2026-01-10 08:57:45] HITS file was successfully produced:
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user 795173279 Jan 10 08:56 shared/HITS.pool.root.1
[2026-01-10 08:57:45]  *** Contents of shared directory: ***
[2026-01-10 08:57:45] total 1164084
[2026-01-10 08:57:45] -rw-r--r-- 2 mf493845 unix-user 392245836 Jan 10 04:18 ATLAS.root_0
[2026-01-10 08:57:45] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 04:18 start_atlas.sh
[2026-01-10 08:57:45] -rw-r--r-- 2 mf493845 unix-user    592615 Jan 10 04:18 input.tar.gz
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user 795173279 Jan 10 08:56 HITS.pool.root.1
[2026-01-10 08:57:45] -rw------- 1 mf493845 unix-user   3983360 Jan 10 08:57 result.tar.gz
08:57:47 (4716): run_atlas exited; CPU time 128110.977617
08:57:47 (4716): called boinc_finish(0)

</stderr_txt>
]]>

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