Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:11:14 (637878): wrapper (7.7.26015): starting
03:11:14 (637878): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 03:11:14] Arguments: --nthreads 12
[2026-01-10 03:11:14] Threads: 12
[2026-01-10 03:11:14] Checking for CVMFS
[2026-01-10 03:11:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 03:11:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 03:11:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 03:11:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 03:11:15] 2.11.0.0 331953 2573 97248 154965 0 126 3483481 6144001 12086 130560 0 30949755 99.999 222943 283 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-10 03:11:15] CVMFS is ok
[2026-01-10 03:11:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 03:11:15] Checking for apptainer binary...
[2026-01-10 03:11:15] apptainer is not installed, using version from CVMFS
[2026-01-10 03:11:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 03:11:15] radiat0r
[2026-01-10 03:11:15] apptainer works
[2026-01-10 03:11:15] Set ATHENA_PROC_NUMBER=12
[2026-01-10 03:11:15] Set ATHENA_CORE_NUMBER=12
[2026-01-10 03:11:15] Starting ATLAS job with PandaID=6964559512
[2026-01-10 03:11:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/21 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 04:20:42]  *** The last 200 lines of the pilot log: ***
[2026-01-10 04:20:42]  storage_token=
[2026-01-10 04:20:42]  surl=/var/lib/boinc/slots/21/PanDA_Pilot-6964559512/log.47898826._040133.job.log.tgz.1
[2026-01-10 04:20:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2f/11/log.47898826._040133.job.log.tgz.1
[2026-01-10 04:20:42]  workdir=None
[2026-01-10 04:20:42] ]
[2026-01-10 04:20:42] 2026-01-10 04:19:28,012 | INFO     | transferring file log.47898826._040133.job.log.tgz.1 from /var/lib/boinc/slots/21/PanDA_Pilot-6964559512/log.47898826._040133.job.log.tgz.1 to /var/lib/boinc/slots
[2026-01-10 04:20:42] 2026-01-10 04:19:28,013 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/21/PanDA_Pilot-6964559512/log.47898826._040133.job.log.tgz.1 /var/lib/boinc/slots/21/log.47898826._040133.j
[2026-01-10 04:20:42] 2026-01-10 04:19:28,020 | INFO     | time since job start (4079s) is within the limit (349056.0s)
[2026-01-10 04:20:42] 2026-01-10 04:19:28,039 | INFO     | adding to output.list: log.47898826._040133.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2f/11/log.47898826._040133.job.log.tg
[2026-01-10 04:20:42] 2026-01-10 04:19:28,040 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 04:20:42] 2026-01-10 04:19:28,040 | INFO     | summary of transferred files:
[2026-01-10 04:20:42] 2026-01-10 04:19:28,040 | INFO     |  -- lfn=log.47898826._040133.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 04:20:42] 2026-01-10 04:19:28,040 | INFO     | stage-out finished correctly
[2026-01-10 04:20:42] 2026-01-10 04:19:28,923 | INFO     | monitor loop #284: job 0:6964559512 is in state 'finished'
[2026-01-10 04:20:42] 2026-01-10 04:19:28,923 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 04:20:42] 2026-01-10 04:19:30,027 | INFO     | time since job start (4081s) is within the limit (349056.0s)
[2026-01-10 04:20:42] 2026-01-10 04:19:30,909 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 04:20:42] 2026-01-10 04:19:31,432 | INFO     | monitor loop #285: job 0:6964559512 is in state 'finished'
[2026-01-10 04:20:42] 2026-01-10 04:19:31,432 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 04:20:42] 2026-01-10 04:19:32,033 | INFO     | time since job start (4083s) is within the limit (349056.0s)
[2026-01-10 04:20:42] 2026-01-10 04:19:32,975 | INFO     | job 6964559512 has state=finished
[2026-01-10 04:20:42] 2026-01-10 04:19:32,975 | INFO     | preparing for final server update for job 6964559512 in state='finished'
[2026-01-10 04:20:42] 2026-01-10 04:19:32,975 | INFO     | this job has now completed (state=finished)
[2026-01-10 04:20:42] 2026-01-10 04:19:32,976 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 04:20:42] 2026-01-10 04:19:32,976 | INFO     | log transfer has been attempted: DONE
[2026-01-10 04:20:42] 2026-01-10 04:19:32,976 | INFO     | job 6964559512 has finished - writing final server update
[2026-01-10 04:20:42] 2026-01-10 04:19:32,976 | INFO     | total number of processed events: 400 (read)
[2026-01-10 04:20:42] 2026-01-10 04:19:32,979 | INFO     | executing command: lscpu
[2026-01-10 04:20:42] 2026-01-10 04:19:33,134 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 04:20:42] 2026-01-10 04:19:33,936 | INFO     | monitor loop #286: job 0:6964559512 is in state 'finished'
[2026-01-10 04:20:42] 2026-01-10 04:19:33,936 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 04:20:42] 2026-01-10 04:19:34,039 | INFO     | time since job start (4085s) is within the limit (349056.0s)
[2026-01-10 04:20:42] 2026-01-10 04:19:36,046 | INFO     | time since job start (4087s) is within the limit (349056.0s)
[2026-01-10 04:20:42] 2026-01-10 04:19:36,439 | INFO     | monitor loop #287: job 0:6964559512 is in state 'finished'
[2026-01-10 04:20:42] 2026-01-10 04:19:36,440 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 04:20:42] 2026-01-10 04:19:37,566 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 04:20:42] 2026-01-10 04:19:37,625 | INFO     | PID=645112 has CPU usage=10.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 04:20:42] 2026-01-10 04:19:37,625 | INFO     | .. there are 5 such processes running
[2026-01-10 04:20:42] 2026-01-10 04:19:37,631 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2164.3289492187496
[2026-01-10 04:20:42] 2026-01-10 04:19:37,702 | INFO     | using path: /var/lib/boinc/slots/21/PanDA_Pilot-6964559512/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 04:20:42] 2026-01-10 04:19:37,703 | INFO     | extracted standard info from prmon json
[2026-01-10 04:20:42] 2026-01-10 04:19:37,703 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 04:20:42] 2026-01-10 04:19:37,703 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 04:20:42] 2026-01-10 04:19:37,703 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 04:20:42] 2026-01-10 04:19:37,703 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 04:20:42] 2026-01-10 04:19:37,704 | INFO     | fitting pss+swap vs Time
[2026-01-10 04:20:42] 2026-01-10 04:19:37,704 | INFO     | sum of square deviations: 66959395.0
[2026-01-10 04:20:42] 2026-01-10 04:19:37,704 | INFO     | sum of deviations: 619117182.0
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | mean x: 1768016824.5
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | mean y: 2672370.4
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | intersect: -16344691492.625174
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | chi2: 0.0014034374419176394
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | current memory leak: 9.25 B/s (using 60 data points, chi2=0.00)
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | could have reported an average CPU frequency of 2313 MHz (6 samples)
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | ..............................
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | . Timing measurements:
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | . get job = 0 s
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | . initial setup = 1 s
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | . payload setup = 7 s
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | . stage-in = 0 s
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | . payload execution = 4049 s
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | . stage-out = 0 s
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | . log creation = 0 s
[2026-01-10 04:20:42] 2026-01-10 04:19:37,705 | INFO     | ..............................
[2026-01-10 04:20:42] 2026-01-10 04:19:37,900 | INFO     | 
[2026-01-10 04:20:42] 2026-01-10 04:19:37,900 | INFO     | job summary report
[2026-01-10 04:20:42] 2026-01-10 04:19:37,900 | INFO     | --------------------------------------------------
[2026-01-10 04:20:42] 2026-01-10 04:19:37,900 | INFO     | PanDA job id: 6964559512
[2026-01-10 04:20:42] 2026-01-10 04:19:37,900 | INFO     | task id: 47898826
[2026-01-10 04:20:42] 2026-01-10 04:19:37,900 | INFO     | errors: (none)
[2026-01-10 04:20:42] 2026-01-10 04:19:37,900 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 04:20:42] 2026-01-10 04:19:37,900 | INFO     | pilot state: finished 
[2026-01-10 04:20:42] 2026-01-10 04:19:37,900 | INFO     | transexitcode: 0
[2026-01-10 04:20:42] 2026-01-10 04:19:37,900 | INFO     | exeerrorcode: 0
[2026-01-10 04:20:42] 2026-01-10 04:19:37,900 | INFO     | exeerrordiag: 
[2026-01-10 04:20:42] 2026-01-10 04:19:37,901 | INFO     | exitcode: 0
[2026-01-10 04:20:42] 2026-01-10 04:19:37,901 | INFO     | exitmsg: OK
[2026-01-10 04:20:42] 2026-01-10 04:19:37,901 | INFO     | cpuconsumptiontime: 44082 s
[2026-01-10 04:20:42] 2026-01-10 04:19:37,901 | INFO     | nevents: 400
[2026-01-10 04:20:42] 2026-01-10 04:19:37,901 | INFO     | neventsw: 0
[2026-01-10 04:20:42] 2026-01-10 04:19:37,901 | INFO     | pid: 653282
[2026-01-10 04:20:42] 2026-01-10 04:19:37,901 | INFO     | pgrp: 653282
[2026-01-10 04:20:42] 2026-01-10 04:19:37,901 | INFO     | corecount: 12
[2026-01-10 04:20:42] 2026-01-10 04:19:37,901 | INFO     | event service: False
[2026-01-10 04:20:42] 2026-01-10 04:19:37,901 | INFO     | sizes: {0: 2283963, 1: 2283963, 7: 2284253, 11: 2284281, 4061: 2310447, 4062: 2319447, 4065: 2319631, 4071: 2319825}
[2026-01-10 04:20:42] 2026-01-10 04:19:37,901 | INFO     | --------------------------------------------------
[2026-01-10 04:20:42] 2026-01-10 04:19:37,901 | INFO     | 
[2026-01-10 04:20:42] 2026-01-10 04:19:37,901 | INFO     | executing command: ls -lF /var/lib/boinc/slots/21
[2026-01-10 04:20:42] 2026-01-10 04:19:37,923 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,923 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,923 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,923 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,924 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,924 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,924 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,924 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,924 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,924 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,924 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,924 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,924 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,925 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,925 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,925 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,925 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,925 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 04:20:42] 2026-01-10 04:19:37,925 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,925 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 04:20:42] 2026-01-10 04:19:37,925 | INFO     | job 6964559512 has completed (purged errors)
[2026-01-10 04:20:42] 2026-01-10 04:19:37,926 | INFO     | overall cleanup function is called
[2026-01-10 04:20:42] 2026-01-10 04:19:38,936 | INFO     | --- collectZombieJob: --- 10, [653282]
[2026-01-10 04:20:42] 2026-01-10 04:19:38,936 | INFO     | zombie collector waiting for pid 653282
[2026-01-10 04:20:42] 2026-01-10 04:19:38,936 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 04:20:42] 2026-01-10 04:19:38,936 | INFO     | collected zombie processes
[2026-01-10 04:20:42] 2026-01-10 04:19:38,936 | INFO     | will attempt to kill all subprocesses of pid=653282
[2026-01-10 04:20:42] 2026-01-10 04:19:39,367 | INFO     | process IDs to be killed: [653282] (in reverse order)
[2026-01-10 04:20:42] 2026-01-10 04:19:39,529 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 04:20:42] 2026-01-10 04:19:39,529 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 04:20:42] 2026-01-10 04:19:39,558 | INFO     | did not find any defunct processes belonging to 653282
[2026-01-10 04:20:42] 2026-01-10 04:19:39,584 | INFO     | did not find any defunct processes belonging to 653282
[2026-01-10 04:20:42] 2026-01-10 04:19:39,584 | INFO     | ready for new job
[2026-01-10 04:20:42] 2026-01-10 04:19:39,584 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 04:20:42] 2026-01-10 04:19:39,587 | INFO     | ***************************************
[2026-01-10 04:20:42] 2026-01-10 04:19:39,587 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 04:20:42] 2026-01-10 04:19:39,587 | INFO     | ***************************************
[2026-01-10 04:20:42] 2026-01-10 04:19:39,587 | INFO     | 
[2026-01-10 04:20:42] 2026-01-10 04:19:39,630 | INFO     | architecture information:
[2026-01-10 04:20:42] 2026-01-10 04:19:39,631 | INFO     | executing command: cat /etc/os-release
[2026-01-10 04:20:42] 2026-01-10 04:19:39,649 | INFO     | cat /etc/os-release:
[2026-01-10 04:20:42] NAME="CentOS Linux"
[2026-01-10 04:20:42] VERSION="7 (Core)"
[2026-01-10 04:20:42] ID="centos"
[2026-01-10 04:20:42] ID_LIKE="rhel fedora"
[2026-01-10 04:20:42] VERSION_ID="7"
[2026-01-10 04:20:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 04:20:42] ANSI_COLOR="0;31"
[2026-01-10 04:20:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 04:20:42] HOME_URL="https://www.centos.org/"
[2026-01-10 04:20:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 04:20:42] 
[2026-01-10 04:20:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 04:20:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 04:20:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 04:20:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 04:20:42] 
[2026-01-10 04:20:42] 2026-01-10 04:19:39,649 | INFO     | ***************************************
[2026-01-10 04:20:42] 2026-01-10 04:19:40,153 | INFO     | executing command: df -mP /var/lib/boinc/slots/21
[2026-01-10 04:20:42] 2026-01-10 04:19:40,179 | INFO     | sufficient remaining disk space (1710531543040 B)
[2026-01-10 04:20:42] 2026-01-10 04:19:40,179 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 04:20:42] 2026-01-10 04:19:40,180 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 04:20:42] 2026-01-10 04:19:40,180 | INFO     | update_server=False
[2026-01-10 04:20:42] 2026-01-10 04:19:40,180 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 04:20:42] 2026-01-10 04:19:40,180 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:20:42] 2026-01-10 04:19:40,181 | INFO     | aborting loop
[2026-01-10 04:20:42] 2026-01-10 04:19:40,317 | INFO     | all payload control threads have been joined
[2026-01-10 04:20:42] 2026-01-10 04:19:40,880 | INFO     | all job control threads have been joined
[2026-01-10 04:20:42] 2026-01-10 04:19:40,980 | INFO     | all data control threads have been joined
[2026-01-10 04:20:42] 2026-01-10 04:19:41,112 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 04:20:42] 2026-01-10 04:19:41,185 | INFO     | [job] retrieve thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:19:41,186 | INFO     | [job] job monitor thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:19:41,323 | INFO     | [payload] control thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:19:41,368 | INFO     | [data] copytool_in thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:19:41,443 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:19:41,481 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 04:20:42] 2026-01-10 04:19:41,859 | INFO     | [job] validate thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:19:41,884 | INFO     | [job] control thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:19:41,985 | INFO     | [data] control thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:19:42,180 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:19:42,202 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:19:42,285 | INFO     | [payload] failed_post thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:19:42,769 | INFO     | [payload] validate_post thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:19:42,769 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:20:42] 2026-01-10 04:19:43,116 | INFO     | [data] copytool_out thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:19:43,775 | INFO     | [job] queue monitor thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:19:45,487 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:19:50,900 | INFO     | job.realtimelogging is not enabled
[2026-01-10 04:20:42] 2026-01-10 04:19:51,906 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 04:20:42] 2026-01-10 04:20:10,219 | INFO     | PID=645112 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 04:20:42] 2026-01-10 04:20:10,220 | INFO     | .. there are 4 such processes running
[2026-01-10 04:20:42] 2026-01-10 04:20:10,220 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 04:20:42] 2026-01-10 04:20:10,220 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 04:20:42] 2026-01-10 04:20:10,220 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 04:20:42] 2026-01-10 04:20:34,925 | INFO     | [monitor] cgroup control has ended
[2026-01-10 04:20:42] 2026-01-10 04:20:36,819 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140636861781824)>', '<ExcThread(monitor, started 140636153968384)>']
[2026-01-10 04:20:42] 2026-01-10 04:20:37,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 04:20:42] 2026-01-10 04:20:37,357 | INFO     | [monitor] control thread has ended
[2026-01-10 04:20:42] 2026-01-10 04:20:41,845 | INFO     | all workflow threads have been joined
[2026-01-10 04:20:42] 2026-01-10 04:20:41,845 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 04:20:42] 2026-01-10 04:20:41,845 | INFO     | traces error code: 0
[2026-01-10 04:20:42] 2026-01-10 04:20:41,846 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 04:20:42] 2026-01-10 04:20:41,962 [wrapper] ==== pilot stdout END ====
[2026-01-10 04:20:42] 2026-01-10 04:20:41,964 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 04:20:42] 2026-01-10 04:20:41,966 [wrapper] pilotpid: 645112
[2026-01-10 04:20:42] 2026-01-10 04:20:41,968 [wrapper] Pilot exit status: 0
[2026-01-10 04:20:42] 2026-01-10 04:20:41,977 [wrapper] pandaids: 6964559512
[2026-01-10 04:20:42] 2026-01-10 04:20:42,081 [wrapper] cleanup supervisor_pilot  848987 645113
[2026-01-10 04:20:42] 2026-01-10 04:20:42,084 [wrapper] Test setup, not cleaning
[2026-01-10 04:20:42] 2026-01-10 04:20:42,088 [wrapper] apfmon messages muted
[2026-01-10 04:20:42] 2026-01-10 04:20:42,091 [wrapper] ==== wrapper stdout END ====
[2026-01-10 04:20:42] 2026-01-10 04:20:42,094 [wrapper] ==== wrapper stderr END ====
[2026-01-10 04:20:42]  *** Error codes and diagnostics ***
[2026-01-10 04:20:42]     "exeErrorCode": 0,
[2026-01-10 04:20:42]     "exeErrorDiag": "",
[2026-01-10 04:20:42]     "pilotErrorCode": 0,
[2026-01-10 04:20:42]     "pilotErrorDiag": "",
[2026-01-10 04:20:42]  *** Listing of results directory ***
[2026-01-10 04:20:42] total 439200
[2026-01-10 04:20:42] -rw-r--r-- 1 boinc boinc    579449 Jan  9 16:24 pilot3.tar.gz
[2026-01-10 04:20:42] -rwx------ 1 boinc boinc     36322 Jan  9 16:29 runpilot2-wrapper.sh
[2026-01-10 04:20:42] -rw-r--r-- 1 boinc boinc      5112 Jan  9 16:29 queuedata.json
[2026-01-10 04:20:42] -rw-r--r-- 1 boinc boinc       100 Jan 10 03:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 04:20:42] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 03:11 run_atlas
[2026-01-10 04:20:42] -rw-r--r-- 1 boinc boinc       105 Jan 10 03:11 job.xml
[2026-01-10 04:20:42] -rw-r--r-- 2 boinc boinc 223373966 Jan 10 03:11 EVNT.47898824._000486.pool.root.1
[2026-01-10 04:20:42] -rw-r--r-- 2 boinc boinc     15847 Jan 10 03:11 start_atlas.sh
[2026-01-10 04:20:42] drwxrwx--x 2 boinc boinc      4096 Jan 10 03:11 shared
[2026-01-10 04:20:42] -rw-r--r-- 2 boinc boinc    592398 Jan 10 03:11 input.tar.gz
[2026-01-10 04:20:42] -rw-r--r-- 1 boinc boinc      9416 Jan 10 03:11 init_data.xml
[2026-01-10 04:20:42] -rw-r--r-- 1 boinc boinc         0 Jan 10 03:11 boinc_setup_complete
[2026-01-10 04:20:42] -rw-r--r-- 1 boinc boinc         0 Jan 10 03:11 boinc_lockfile
[2026-01-10 04:20:42] -rw-r--r-- 1 boinc boinc      2514 Jan 10 03:11 pandaJob.out
[2026-01-10 04:20:42] -rw------- 1 boinc boinc    989382 Jan 10 03:11 agis_schedconf.cvmfs.json
[2026-01-10 04:20:42] -rw------- 1 boinc boinc   1516240 Jan 10 03:11 agis_ddmendpoints.agis.ALL.json
[2026-01-10 04:20:42] drwx------ 5 boinc boinc      4096 Jan 10 03:11 pilot3
[2026-01-10 04:20:42] -rw------- 1 boinc boinc 220526159 Jan 10 04:18 HITS.47898826._040133.pool.root.1
[2026-01-10 04:20:42] -rw-r--r-- 1 boinc boinc       529 Jan 10 04:19 boinc_task_state.xml
[2026-01-10 04:20:42] -rw------- 1 boinc boinc      1029 Jan 10 04:19 memory_monitor_summary.json
[2026-01-10 04:20:42] -rw------- 1 boinc boinc    367215 Jan 10 04:19 log.47898826._040133.job.log.tgz.1
[2026-01-10 04:20:42] -rw------- 1 boinc boinc        95 Jan 10 04:19 pilot_heartbeat.json
[2026-01-10 04:20:42] -rw------- 1 boinc boinc      7739 Jan 10 04:19 heartbeat.json
[2026-01-10 04:20:42] -rw-r--r-- 1 boinc boinc      8192 Jan 10 04:20 boinc_mmap_file
[2026-01-10 04:20:42] -rw-r--r-- 1 boinc boinc        27 Jan 10 04:20 wrapper_checkpoint.txt
[2026-01-10 04:20:42] -rw------- 1 boinc boinc      4897 Jan 10 04:20 pilotlog.txt
[2026-01-10 04:20:42] -rw------- 1 boinc boinc    592442 Jan 10 04:20 log.47898826._040133.job.log.1
[2026-01-10 04:20:42] -rw------- 1 boinc boinc       357 Jan 10 04:20 output.list
[2026-01-10 04:20:42] -rw-r--r-- 1 boinc boinc       620 Jan 10 04:20 runtime_log
[2026-01-10 04:20:42] -rw------- 1 boinc boinc    983040 Jan 10 04:20 result.tar.gz
[2026-01-10 04:20:42] -rw-r--r-- 1 boinc boinc      8788 Jan 10 04:20 runtime_log.err
[2026-01-10 04:20:42] -rw------- 1 boinc boinc       643 Jan 10 04:20 CpSNDmMXUy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1gmKDmVEmJIo.diag
[2026-01-10 04:20:42] -rw-r--r-- 1 boinc boinc     22008 Jan 10 04:20 stderr.txt
[2026-01-10 04:20:42] HITS file was successfully produced:
[2026-01-10 04:20:42] -rw------- 1 boinc boinc 220526159 Jan 10 04:18 shared/HITS.pool.root.1
[2026-01-10 04:20:42]  *** Contents of shared directory: ***
[2026-01-10 04:20:42] total 435064
[2026-01-10 04:20:42] -rw-r--r-- 2 boinc boinc 223373966 Jan 10 03:11 ATLAS.root_0
[2026-01-10 04:20:42] -rw-r--r-- 2 boinc boinc     15847 Jan 10 03:11 start_atlas.sh
[2026-01-10 04:20:42] -rw-r--r-- 2 boinc boinc    592398 Jan 10 03:11 input.tar.gz
[2026-01-10 04:20:42] -rw------- 1 boinc boinc 220526159 Jan 10 04:18 HITS.pool.root.1
[2026-01-10 04:20:42] -rw------- 1 boinc boinc    983040 Jan 10 04:20 result.tar.gz
04:20:43 (637878): run_atlas exited; CPU time 44323.280851
04:20:43 (637878): called boinc_finish(0)

</stderr_txt>
]]>

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