Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:03:20 (7674): wrapper (7.7.26015): starting
12:03:20 (7674): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 12:03:20] Arguments: --nthreads 8
[2026-01-10 12:03:20] Threads: 8
[2026-01-10 12:03:20] Checking for CVMFS
[2026-01-10 12:03:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 12:03:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 12:03:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 12:03:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 12:03:23] 2.11.2.0 4122 36771 124108 154976 1 63 22529607 25165824 899 130560 0 16981903 99.830 9240325 3444 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 12:03:23] CVMFS is ok
[2026-01-10 12:03:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 12:03:23] Checking for apptainer binary...
[2026-01-10 12:03:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 12:03:23] Running /usr/bin/apptainer --version
[2026-01-10 12:03:23] apptainer version 1.3.2-1.el7
[2026-01-10 12:03:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 12:03:31] cg-vwn411.simple-grid.lan
[2026-01-10 12:03:31] apptainer works
[2026-01-10 12:03:31] Set ATHENA_PROC_NUMBER=8
[2026-01-10 12:03:31] Set ATHENA_CORE_NUMBER=8
[2026-01-10 12:03:31] Starting ATLAS job with PandaID=6964539339
[2026-01-10 12:03:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 14:35:17]  *** The last 200 lines of the pilot log: ***
[2026-01-10 14:35:17] 2026-01-10 13:34:30,810 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 14:35:17] 2026-01-10 13:34:31,087 | INFO     | time since job start (8799s) is within the limit (349056.0s)
[2026-01-10 14:35:17] 2026-01-10 13:34:33,099 | INFO     | time since job start (8801s) is within the limit (349056.0s)
[2026-01-10 14:35:17] 2026-01-10 13:34:33,100 | INFO     | 8813s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-10 14:35:17] 2026-01-10 13:34:33,321 | INFO     | monitor loop #713: job 0:6964539339 is in state 'finished'
[2026-01-10 14:35:17] 2026-01-10 13:34:33,322 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 14:35:17] 2026-01-10 13:34:35,117 | INFO     | time since job start (8803s) is within the limit (349056.0s)
[2026-01-10 14:35:17] 2026-01-10 13:34:35,825 | INFO     | monitor loop #714: job 0:6964539339 is in state 'finished'
[2026-01-10 14:35:17] 2026-01-10 13:34:35,826 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 14:35:17] 2026-01-10 13:34:37,123 | INFO     | time since job start (8805s) is within the limit (349056.0s)
[2026-01-10 14:35:17] 2026-01-10 13:34:38,242 | INFO     | PID=11400 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 14:35:17] 2026-01-10 13:34:38,242 | INFO     | .. there are 2 such processes running
[2026-01-10 14:35:17] 2026-01-10 13:34:38,343 | INFO     | monitor loop #715: job 0:6964539339 is in state 'finished'
[2026-01-10 14:35:17] 2026-01-10 13:34:38,344 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 14:35:17] 2026-01-10 13:34:38,993 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 14:35:17] 2026-01-10 13:34:38,994 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-10 14:35:17] 2026-01-10 13:34:38,996 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6964539339/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 14:35:17] 2026-01-10 13:34:38,997 | INFO     | extracted standard info from prmon json
[2026-01-10 14:35:17] 2026-01-10 13:34:38,997 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 14:35:17] 2026-01-10 13:34:38,997 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 14:35:17] 2026-01-10 13:34:39,001 | INFO     | fitting pss+swap vs Time
[2026-01-10 14:35:17] 2026-01-10 13:34:39,001 | INFO     | sum of square deviations: 746053266.3582073
[2026-01-10 14:35:17] 2026-01-10 13:34:39,002 | INFO     | sum of deviations: 38806611923.37315
[2026-01-10 14:35:17] 2026-01-10 13:34:39,002 | INFO     | mean x: 1768047893.238806
[2026-01-10 14:35:17] 2026-01-10 13:34:39,003 | INFO     | mean y: 1883955.5820895522
[2026-01-10 14:35:17] 2026-01-10 13:34:39,003 | INFO     | intersect: -91964670644.17049
[2026-01-10 14:35:17] 2026-01-10 13:34:39,003 | INFO     | chi2: 38.20018462788089
[2026-01-10 14:35:17] 2026-01-10 13:34:39,003 | INFO     | sum of square deviations: 665644741.0232567
[2026-01-10 14:35:17] 2026-01-10 13:34:39,010 | INFO     | sum of deviations: 68121847528.348854
[2026-01-10 14:35:17] 2026-01-10 13:34:39,011 | INFO     | mean x: 1768047740.7674417
[2026-01-10 14:35:17] 2026-01-10 13:34:39,011 | INFO     | mean y: 1939589.511627907
[2026-01-10 14:35:17] 2026-01-10 13:34:39,011 | INFO     | intersect: -180939441295.21054
[2026-01-10 14:35:17] 2026-01-10 13:34:39,011 | INFO     | chi2: 33.11111152643002
[2026-01-10 14:35:17] 2026-01-10 13:34:39,011 | INFO     | current chi2=33.11111152643002 (change=13.322116505522175 %)
[2026-01-10 14:35:17] 2026-01-10 13:34:39,012 | INFO     | right removable region: 128
[2026-01-10 14:35:17] 2026-01-10 13:34:39,012 | INFO     | sum of square deviations: 665584351.0232567
[2026-01-10 14:35:17] 2026-01-10 13:34:39,013 | INFO     | sum of deviations: 427860337.9069748
[2026-01-10 14:35:17] 2026-01-10 13:34:39,013 | INFO     | mean x: 1768048045.7674417
[2026-01-10 14:35:17] 2026-01-10 13:34:39,013 | INFO     | mean y: 1956732.9302325582
[2026-01-10 14:35:17] 2026-01-10 13:34:39,013 | INFO     | intersect: -1134604896.162804
[2026-01-10 14:35:17] 2026-01-10 13:34:39,014 | INFO     | chi2: 30.43877862100375
[2026-01-10 14:35:17] 2026-01-10 13:34:39,014 | INFO     | current chi2=30.43877862100375 (change=20.31771857252328 %)
[2026-01-10 14:35:17] 2026-01-10 13:34:39,014 | INFO     | left removable region: 10
[2026-01-10 14:35:17] 2026-01-10 13:34:39,014 | INFO     | sum of square deviations: 509418152.4406776
[2026-01-10 14:35:17] 2026-01-10 13:34:39,015 | INFO     | sum of deviations: 1407936653.1186476
[2026-01-10 14:35:17] 2026-01-10 13:34:39,015 | INFO     | mean x: 1768048015.338983
[2026-01-10 14:35:17] 2026-01-10 13:34:39,015 | INFO     | mean y: 2113613.3220338984
[2026-01-10 14:35:17] 2026-01-10 13:34:39,015 | INFO     | intersect: -4884440965.353521
[2026-01-10 14:35:17] 2026-01-10 13:34:39,016 | INFO     | chi2: 18.328944643532594
[2026-01-10 14:35:17] 2026-01-10 13:34:39,016 | INFO     | current memory leak: 2.76 B/s (using 118 data points, chi2=18.33)
[2026-01-10 14:35:17] 2026-01-10 13:34:39,016 | INFO     | could have reported an average CPU frequency of 1999 MHz (8 samples)
[2026-01-10 14:35:17] 2026-01-10 13:34:39,017 | INFO     | ..............................
[2026-01-10 14:35:17] 2026-01-10 13:34:39,017 | INFO     | . Timing measurements:
[2026-01-10 14:35:17] 2026-01-10 13:34:39,017 | INFO     | . get job = 0 s
[2026-01-10 14:35:17] 2026-01-10 13:34:39,017 | INFO     | . initial setup = 12 s
[2026-01-10 14:35:17] 2026-01-10 13:34:39,017 | INFO     | . payload setup = 184 s
[2026-01-10 14:35:17] 2026-01-10 13:34:39,017 | INFO     | . stage-in = 0 s
[2026-01-10 14:35:17] 2026-01-10 13:34:39,017 | INFO     | . payload execution = 8287 s
[2026-01-10 14:35:17] 2026-01-10 13:34:39,017 | INFO     | . stage-out = 3 s
[2026-01-10 14:35:17] 2026-01-10 13:34:39,017 | INFO     | . log creation = 1 s
[2026-01-10 14:35:17] 2026-01-10 13:34:39,018 | INFO     | ..............................
[2026-01-10 14:35:17] 2026-01-10 13:34:39,243 | INFO     | time since job start (8807s) is within the limit (349056.0s)
[2026-01-10 14:35:17] 2026-01-10 13:34:39,661 | INFO     | 
[2026-01-10 14:35:17] 2026-01-10 13:34:39,662 | INFO     | job summary report
[2026-01-10 14:35:17] 2026-01-10 13:34:39,662 | INFO     | --------------------------------------------------
[2026-01-10 14:35:17] 2026-01-10 13:34:39,662 | INFO     | PanDA job id: 6964539339
[2026-01-10 14:35:17] 2026-01-10 13:34:39,662 | INFO     | task id: 47962010
[2026-01-10 14:35:17] 2026-01-10 13:34:39,662 | INFO     | errors: (none)
[2026-01-10 14:35:17] 2026-01-10 13:34:39,662 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 14:35:17] 2026-01-10 13:34:39,662 | INFO     | pilot state: finished 
[2026-01-10 14:35:17] 2026-01-10 13:34:39,662 | INFO     | transexitcode: 0
[2026-01-10 14:35:17] 2026-01-10 13:34:39,662 | INFO     | exeerrorcode: 0
[2026-01-10 14:35:17] 2026-01-10 13:34:39,663 | INFO     | exeerrordiag: 
[2026-01-10 14:35:17] 2026-01-10 13:34:39,663 | INFO     | exitcode: 0
[2026-01-10 14:35:17] 2026-01-10 13:34:39,663 | INFO     | exitmsg: OK
[2026-01-10 14:35:17] 2026-01-10 13:34:39,663 | INFO     | cpuconsumptiontime: 20999 s
[2026-01-10 14:35:17] 2026-01-10 13:34:39,663 | INFO     | nevents: 50
[2026-01-10 14:35:17] 2026-01-10 13:34:39,663 | INFO     | neventsw: 0
[2026-01-10 14:35:17] 2026-01-10 13:34:39,663 | INFO     | pid: 17903
[2026-01-10 14:35:17] 2026-01-10 13:34:39,663 | INFO     | pgrp: 17903
[2026-01-10 14:35:17] 2026-01-10 13:34:39,663 | INFO     | corecount: 8
[2026-01-10 14:35:17] 2026-01-10 13:34:39,664 | INFO     | event service: False
[2026-01-10 14:35:17] 2026-01-10 13:34:39,664 | INFO     | sizes: {0: 2284342, 1: 2284597, 12: 2284597, 23: 2284625, 33: 2284653, 44: 2284709, 55: 2284865, 66: 2284893, 76: 2284921, 87: 2284977, 98: 2285005, 106: 2285575, 
[2026-01-10 14:35:17] 2026-01-10 13:34:39,664 | INFO     | --------------------------------------------------
[2026-01-10 14:35:17] 2026-01-10 13:34:39,664 | INFO     | 
[2026-01-10 14:35:17] 2026-01-10 13:34:39,664 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-01-10 14:35:17] 2026-01-10 13:34:39,932 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,932 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,932 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,932 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,933 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,933 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,933 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,933 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,933 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,933 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,933 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,933 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,933 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,934 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,934 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,934 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,934 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,934 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 14:35:17] 2026-01-10 13:34:39,934 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,934 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 14:35:17] 2026-01-10 13:34:39,934 | INFO     | job 6964539339 has completed (purged errors)
[2026-01-10 14:35:17] 2026-01-10 13:34:39,935 | INFO     | overall cleanup function is called
[2026-01-10 14:35:17] 2026-01-10 13:34:40,963 | INFO     | --- collectZombieJob: --- 10, [17903]
[2026-01-10 14:35:17] 2026-01-10 13:34:40,964 | INFO     | zombie collector waiting for pid 17903
[2026-01-10 14:35:17] 2026-01-10 13:34:40,964 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 14:35:17] 2026-01-10 13:34:40,964 | INFO     | collected zombie processes
[2026-01-10 14:35:17] 2026-01-10 13:34:40,964 | INFO     | will attempt to kill all subprocesses of pid=17903
[2026-01-10 14:35:17] 2026-01-10 13:34:41,056 | INFO     | process IDs to be killed: [17903] (in reverse order)
[2026-01-10 14:35:17] 2026-01-10 13:34:41,966 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 14:35:17] 2026-01-10 13:34:41,966 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 14:35:17] 2026-01-10 13:34:41,968 | INFO     | did not find any defunct processes belonging to 17903
[2026-01-10 14:35:17] 2026-01-10 13:34:41,970 | INFO     | did not find any defunct processes belonging to 17903
[2026-01-10 14:35:17] 2026-01-10 13:34:41,970 | INFO     | ready for new job
[2026-01-10 14:35:17] 2026-01-10 13:34:41,971 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 14:35:17] 2026-01-10 13:34:41,972 | INFO     | ***************************************
[2026-01-10 14:35:17] 2026-01-10 13:34:41,973 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 14:35:17] 2026-01-10 13:34:41,973 | INFO     | ***************************************
[2026-01-10 14:35:17] 2026-01-10 13:34:41,973 | INFO     | 
[2026-01-10 14:35:17] 2026-01-10 13:34:41,973 | INFO     | pilot is running in a VM
[2026-01-10 14:35:17] 2026-01-10 13:34:41,974 | INFO     | architecture information:
[2026-01-10 14:35:17] 2026-01-10 13:34:41,989 | INFO     | executing command: cat /etc/os-release
[2026-01-10 14:35:17] 2026-01-10 13:34:42,234 | INFO     | cat /etc/os-release:
[2026-01-10 14:35:17] NAME="CentOS Linux"
[2026-01-10 14:35:17] VERSION="7 (Core)"
[2026-01-10 14:35:17] ID="centos"
[2026-01-10 14:35:17] ID_LIKE="rhel fedora"
[2026-01-10 14:35:17] VERSION_ID="7"
[2026-01-10 14:35:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 14:35:17] ANSI_COLOR="0;31"
[2026-01-10 14:35:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 14:35:17] HOME_URL="https://www.centos.org/"
[2026-01-10 14:35:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 14:35:17] 
[2026-01-10 14:35:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 14:35:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 14:35:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 14:35:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 14:35:17] 
[2026-01-10 14:35:17] 2026-01-10 13:34:42,234 | INFO     | ***************************************
[2026-01-10 14:35:17] 2026-01-10 13:34:42,737 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-01-10 14:35:17] 2026-01-10 13:34:42,991 | INFO     | sufficient remaining disk space (496956866560 B)
[2026-01-10 14:35:17] 2026-01-10 13:34:42,991 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 14:35:17] 2026-01-10 13:34:42,991 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 14:35:17] 2026-01-10 13:34:42,992 | INFO     | update_server=False
[2026-01-10 14:35:17] 2026-01-10 13:34:42,992 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 14:35:17] 2026-01-10 13:34:42,997 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 14:35:17] 2026-01-10 13:34:42,998 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 14:35:17] 2026-01-10 13:34:43,360 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 14:35:17] 2026-01-10 13:34:43,361 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 14:35:17] 2026-01-10 13:34:43,361 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 14:35:17] 2026-01-10 13:34:43,361 | INFO     | will abort loop
[2026-01-10 14:35:17] 2026-01-10 13:34:43,997 | INFO     | [job] retrieve thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:34:43,998 | INFO     | all data control threads have been joined
[2026-01-10 14:35:17] 2026-01-10 13:34:44,015 | INFO     | all payload control threads have been joined
[2026-01-10 14:35:17] 2026-01-10 13:34:44,056 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:34:44,057 | INFO     | [payload] validate_post thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:34:44,189 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 14:35:17] 2026-01-10 13:34:44,243 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:34:44,276 | INFO     | all job control threads have been joined
[2026-01-10 14:35:17] 2026-01-10 13:34:44,366 | INFO     | [job] job monitor thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:34:44,716 | INFO     | [job] validate thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:34:44,788 | INFO     | [payload] failed_post thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:34:44,857 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:34:45,004 | INFO     | [data] copytool_out thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:34:45,008 | INFO     | [data] control thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:34:45,021 | INFO     | [payload] control thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:34:45,042 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:34:45,175 | INFO     | [data] copytool_in thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:34:45,195 | INFO     | [job] queue monitor thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:34:45,282 | INFO     | [job] control thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:34:47,006 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 14:35:17] 2026-01-10 13:35:06,564 | INFO     | [monitor] cgroup control has ended
[2026-01-10 14:35:17] 2026-01-10 13:35:08,061 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140140057257792)>', '<ExcThread(monitor, started 140139338655488)>']
[2026-01-10 14:35:17] 2026-01-10 13:35:12,385 | INFO     | PID=11400 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 14:35:17] 2026-01-10 13:35:12,385 | INFO     | .. there are 2 such processes running
[2026-01-10 14:35:17] 2026-01-10 13:35:12,385 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 14:35:17] 2026-01-10 13:35:12,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 14:35:17] 2026-01-10 13:35:12,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 14:35:17] 2026-01-10 13:35:12,385 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 14:35:17] 2026-01-10 13:35:12,385 | INFO     | [monitor] control thread has ended
[2026-01-10 14:35:17] 2026-01-10 13:35:13,087 | INFO     | all workflow threads have been joined
[2026-01-10 14:35:17] 2026-01-10 13:35:13,088 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 14:35:17] 2026-01-10 13:35:13,088 | INFO     | traces error code: 0
[2026-01-10 14:35:17] 2026-01-10 13:35:13,088 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 14:35:17] 2026-01-10 13:35:13,465 [wrapper] ==== pilot stdout END ====
[2026-01-10 14:35:17] 2026-01-10 13:35:13,567 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 14:35:17] 2026-01-10 13:35:13,641 [wrapper] pilotpid: 11400
[2026-01-10 14:35:17] 2026-01-10 13:35:13,762 [wrapper] Pilot exit status: 0
[2026-01-10 14:35:17] 2026-01-10 13:35:14,219 [wrapper] pandaids: 6964539339
[2026-01-10 14:35:17] 2026-01-10 13:35:14,851 [wrapper] cleanup supervisor_pilot  2524 11401
[2026-01-10 14:35:17] 2026-01-10 13:35:14,914 [wrapper] Test setup, not cleaning
[2026-01-10 14:35:17] 2026-01-10 13:35:15,035 [wrapper] apfmon messages muted
[2026-01-10 14:35:17] 2026-01-10 13:35:15,153 [wrapper] ==== wrapper stdout END ====
[2026-01-10 14:35:17] 2026-01-10 13:35:15,255 [wrapper] ==== wrapper stderr END ====
[2026-01-10 14:35:17]  *** Error codes and diagnostics ***
[2026-01-10 14:35:18]     "exeErrorCode": 0,
[2026-01-10 14:35:18]     "exeErrorDiag": "",
[2026-01-10 14:35:18]     "pilotErrorCode": 0,
[2026-01-10 14:35:18]     "pilotErrorDiag": "",
[2026-01-10 14:35:18]  *** Listing of results directory ***
[2026-01-10 14:35:18] total 439536
[2026-01-10 14:35:18] -rw-r--r--. 1 boinc boinc    579449 Jan  9 16:55 pilot3.tar.gz
[2026-01-10 14:35:18] -rwx------. 1 boinc boinc     36322 Jan  9 17:00 runpilot2-wrapper.sh
[2026-01-10 14:35:18] -rw-r--r--. 1 boinc boinc      5112 Jan  9 17:00 queuedata.json
[2026-01-10 14:35:18] -rw-r--r--. 1 boinc boinc       100 Jan 10 12:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 14:35:18] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 12:03 run_atlas
[2026-01-10 14:35:18] -rw-r--r--. 1 boinc boinc       105 Jan 10 12:03 job.xml
[2026-01-10 14:35:18] -rw-r--r--. 1 boinc boinc      6391 Jan 10 12:03 init_data.xml
[2026-01-10 14:35:18] -rw-r--r--. 2 boinc boinc 394279427 Jan 10 12:03 EVNT.47962006._000043.pool.root.1
[2026-01-10 14:35:18] -rw-r--r--. 2 boinc boinc     15847 Jan 10 12:03 start_atlas.sh
[2026-01-10 14:35:18] drwxrwx--x. 2 boinc boinc        68 Jan 10 12:03 shared
[2026-01-10 14:35:18] -rw-r--r--. 2 boinc boinc    592618 Jan 10 12:03 input.tar.gz
[2026-01-10 14:35:18] -rw-r--r--. 1 boinc boinc         0 Jan 10 12:03 boinc_lockfile
[2026-01-10 14:35:18] -rw-r--r--. 1 boinc boinc      2890 Jan 10 12:03 pandaJob.out
[2026-01-10 14:35:18] -rw-------. 1 boinc boinc    989548 Jan 10 12:07 agis_schedconf.cvmfs.json
[2026-01-10 14:35:18] -rw-------. 1 boinc boinc   1516240 Jan 10 12:07 agis_ddmendpoints.agis.ALL.json
[2026-01-10 14:35:18] drwx------. 5 boinc boinc      4096 Jan 10 12:07 pilot3
[2026-01-10 14:35:18] -rw-r--r--. 1 boinc boinc       530 Jan 10 14:04 boinc_task_state.xml
[2026-01-10 14:35:18] -rw-------. 1 boinc boinc  46965169 Jan 10 14:31 HITS.47962010._001903.pool.root.1
[2026-01-10 14:35:18] -rw-------. 1 boinc boinc      1019 Jan 10 14:32 memory_monitor_summary.json
[2026-01-10 14:35:18] -rw-------. 1 boinc boinc   1261395 Jan 10 14:32 log.47962010._001903.job.log.tgz.1
[2026-01-10 14:35:18] -rw-------. 1 boinc boinc        95 Jan 10 14:34 pilot_heartbeat.json
[2026-01-10 14:35:18] -rw-------. 1 boinc boinc      7228 Jan 10 14:34 heartbeat.json
[2026-01-10 14:35:18] -rw-r--r--. 1 boinc boinc      8192 Jan 10 14:34 boinc_mmap_file
[2026-01-10 14:35:18] -rw-r--r--. 1 boinc boinc        27 Jan 10 14:34 wrapper_checkpoint.txt
[2026-01-10 14:35:18] -rw-------. 1 boinc boinc      5070 Jan 10 14:35 pilotlog.txt
[2026-01-10 14:35:18] -rw-------. 1 boinc boinc   1211855 Jan 10 14:35 log.47962010._001903.job.log.1
[2026-01-10 14:35:18] -rw-------. 1 boinc boinc       353 Jan 10 14:35 output.list
[2026-01-10 14:35:18] -rw-r--r--. 1 boinc boinc       620 Jan 10 14:35 runtime_log
[2026-01-10 14:35:18] -rw-------. 1 boinc boinc   2488320 Jan 10 14:35 result.tar.gz
[2026-01-10 14:35:18] -rw-r--r--. 1 boinc boinc      8816 Jan 10 14:35 runtime_log.err
[2026-01-10 14:35:18] -rw-------. 1 boinc boinc       654 Jan 10 14:35 fFENDmI5Ty8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqfmKDmGG0Fvm.diag
[2026-01-10 14:35:18] -rw-r--r--. 1 boinc boinc     21384 Jan 10 14:35 stderr.txt
[2026-01-10 14:35:18] HITS file was successfully produced:
[2026-01-10 14:35:18] -rw-------. 1 boinc boinc 46965169 Jan 10 14:31 shared/HITS.pool.root.1
[2026-01-10 14:35:18]  *** Contents of shared directory: ***
[2026-01-10 14:35:18] total 433936
[2026-01-10 14:35:18] -rw-r--r--. 2 boinc boinc 394279427 Jan 10 12:03 ATLAS.root_0
[2026-01-10 14:35:18] -rw-r--r--. 2 boinc boinc     15847 Jan 10 12:03 start_atlas.sh
[2026-01-10 14:35:18] -rw-r--r--. 2 boinc boinc    592618 Jan 10 12:03 input.tar.gz
[2026-01-10 14:35:18] -rw-------. 1 boinc boinc  46965169 Jan 10 14:31 HITS.pool.root.1
[2026-01-10 14:35:18] -rw-------. 1 boinc boinc   2488320 Jan 10 14:35 result.tar.gz
14:35:19 (7674): run_atlas exited; CPU time 21024.337533
14:35:19 (7674): called boinc_finish(0)

</stderr_txt>
]]>

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